Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00044 * 2 1 4 4 C 1.46902 * 111.00055 * 123.95532 * 2 1 3 5 5 H 1.08998 * 109.47206 * 189.22608 * 4 2 1 6 6 C 1.50698 * 109.46862 * 309.22641 * 4 2 1 7 7 H 1.08001 * 120.00588 * 57.64190 * 6 4 2 8 8 C 1.37883 * 119.99812 * 237.64631 * 6 4 2 9 9 N 1.31514 * 119.99740 * 5.46378 * 8 6 4 10 10 Si 1.86796 * 120.00173 * 185.46549 * 8 6 4 11 11 H 1.48500 * 109.47082 * 59.99766 * 10 8 6 12 12 H 1.48502 * 109.47162 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47288 * 299.99926 * 10 8 6 14 14 C 1.53004 * 109.47130 * 69.22188 * 4 2 1 15 15 C 1.50699 * 109.46982 * 65.00387 * 14 4 2 16 16 C 1.33639 * 126.04014 * 89.71319 * 15 14 4 17 17 N 1.31782 * 114.49795 * 179.78410 * 16 15 14 18 18 C 1.29024 * 117.12739 * 0.52813 * 17 16 15 19 19 S 1.70980 * 110.16702 * 359.70711 * 18 17 16 20 20 H 1.09000 * 109.47442 * 299.99910 * 1 2 3 21 21 H 1.09004 * 109.47217 * 60.00302 * 1 2 3 22 22 H 1.09006 * 109.46946 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46979 * 181.34246 * 3 2 1 24 24 H 1.09004 * 109.46969 * 301.33602 * 3 2 1 25 25 H 1.08993 * 109.47246 * 61.33802 * 3 2 1 26 26 H 0.97003 * 119.99627 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.46863 * 185.00002 * 14 4 2 28 28 H 1.09003 * 109.47434 * 305.00022 * 14 4 2 29 29 H 1.07997 * 122.74647 * 359.97438 * 16 15 14 30 30 H 1.08001 * 124.91531 * 179.75061 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 3.0726 -0.6158 1.2094 6 6 1.3366 -0.2948 2.4084 7 1 0.2615 -0.3307 2.5048 8 6 2.1064 0.1822 3.4481 9 7 3.4043 0.3271 3.2927 10 14 1.3060 0.6227 5.0773 11 1 0.6428 -0.5791 5.6440 12 1 2.3429 1.1076 6.0233 13 1 0.2958 1.6893 4.8602 14 6 1.7005 -2.2531 0.9313 15 6 2.4585 -2.7535 -0.2712 16 6 3.6937 -3.2637 -0.2656 17 7 4.1366 -3.6357 -1.4497 18 6 3.3479 -3.4582 -2.4553 19 16 1.8757 -2.7622 -1.9340 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.0847 1.3424 -0.0241 24 1 1.6267 1.9021 -0.8778 25 1 1.6655 1.8872 0.9017 26 1 3.9459 0.6623 4.0242 27 1 2.0112 -2.8110 1.8146 28 1 0.6314 -2.3927 0.7709 29 1 4.2796 -3.3656 0.6359 30 1 3.5832 -3.7130 -3.4780 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259820005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = 28.105091 kcal Electronic energy + Delta-G solvation = -13833.591996 eV Core-core repulsion = 11562.046861 eV Total energy + Delta-G solvation = -2271.545134 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38767 -38.61556 -34.43119 -33.51183 -29.72476 -28.14659 -27.32286 -25.58038 -24.30557 -21.55438 -20.50354 -18.75291 -18.38814 -16.88150 -16.32346 -15.80851 -15.55685 -15.17273 -14.93396 -14.65330 -14.31666 -13.72621 -13.32833 -13.14287 -12.85540 -12.62899 -12.43428 -12.26626 -12.02555 -11.83903 -11.68709 -11.12932 -10.72463 -10.41640 -9.85754 -9.62458 -8.87079 -8.09752 -6.29826 0.04039 0.70263 1.08019 1.37984 1.40047 1.46542 2.06037 2.38321 3.08808 3.64262 3.69357 4.32245 4.40319 4.55089 4.58693 4.67380 4.88477 4.96733 5.01898 5.07386 5.25318 5.25912 5.34537 5.45642 5.56601 5.71927 6.16236 6.43544 6.72902 6.93585 6.94663 7.40924 8.87985 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.036491 B = 0.008853 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.119617 B = 3161.935165 C = 3482.023807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.542 5.542 3 C 0.055 3.945 4 C 0.201 3.799 5 H 0.041 0.959 6 C -0.548 4.548 7 H 0.055 0.945 8 C 0.028 3.972 9 N -0.916 5.916 10 Si 0.945 3.055 11 H -0.269 1.269 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.023 4.023 15 C -0.181 4.181 16 C -0.014 4.014 17 N -0.499 5.499 18 C -0.012 4.012 19 S 0.171 5.829 20 H 0.014 0.986 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.070 0.930 25 H 0.004 0.996 26 H 0.263 0.737 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.159 0.841 30 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -4.038 -9.066 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.265 5.265 3 C -0.094 4.094 4 C 0.093 3.907 5 H 0.060 0.940 6 C -0.587 4.587 7 H 0.074 0.926 8 C -0.173 4.173 9 N -0.554 5.554 10 Si 0.771 3.229 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.200 1.200 14 C -0.064 4.064 15 C -0.302 4.302 16 C -0.163 4.163 17 N -0.213 5.213 18 C -0.308 4.308 19 S 0.423 5.577 20 H 0.033 0.967 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.023 0.977 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.176 0.824 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.669 -4.176 -10.058 11.849 hybrid contribution 0.320 0.731 2.810 2.921 sum -4.349 -3.446 -7.248 9.128 Atomic orbital electron populations 1.22176 0.88763 1.00886 0.99427 1.62567 1.07517 1.12735 1.43703 1.21888 0.98487 0.90258 0.98749 1.19347 0.96477 0.88357 0.86478 0.94037 1.21778 0.93448 1.42450 1.01052 0.92642 1.25678 0.95226 0.94696 1.01677 1.70015 1.05999 1.46307 1.33125 0.85815 0.78179 0.78716 0.80162 1.19422 1.21319 1.19998 1.20224 0.97870 0.97194 0.91115 1.26169 0.99426 1.04554 1.00070 1.21636 0.94512 1.03983 0.96158 1.66264 1.35546 1.20293 0.99194 1.28807 0.94904 1.03605 1.03528 1.83533 1.18895 1.55913 0.99359 0.96719 0.91449 0.92297 0.94651 0.91138 0.97711 0.92823 0.91753 0.91209 0.82360 0.75583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 8.81 127.69 1.13 2.43 16 2 N -0.54 -22.45 4.66 -927.74 -4.32 -26.77 16 3 C 0.06 2.30 9.38 127.69 1.20 3.50 16 4 C 0.20 9.48 2.01 44.17 0.09 9.57 16 5 H 0.04 2.31 6.75 -2.39 -0.02 2.30 16 6 C -0.55 -28.02 6.64 25.60 0.17 -27.85 16 7 H 0.06 2.81 6.60 -2.91 -0.02 2.79 16 8 C 0.03 1.50 5.45 84.66 0.46 1.96 16 9 N -0.92 -51.65 12.62 21.45 0.27 -51.37 16 10 Si 0.95 42.23 29.54 68.60 2.03 44.25 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 C -0.02 -0.95 5.18 29.85 0.15 -0.80 16 15 C -0.18 -6.72 5.58 24.64 0.14 -6.58 16 16 C -0.01 -0.52 11.25 83.66 0.94 0.42 16 17 N -0.50 -17.68 10.54 -203.75 -2.15 -19.82 16 18 C -0.01 -0.33 12.23 130.65 1.60 1.27 16 19 S 0.17 4.97 23.22 -56.49 -1.31 3.66 16 20 H 0.01 0.58 6.49 -2.39 -0.02 0.56 16 21 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 22 H 0.06 2.01 6.35 -2.38 -0.02 2.00 16 23 H 0.03 1.57 8.05 -2.39 -0.02 1.55 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.00 0.20 7.61 -2.39 -0.02 0.18 16 26 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.07 2.66 6.39 -2.39 -0.02 2.65 16 29 H 0.16 6.14 8.06 -2.91 -0.02 6.11 16 30 H 0.23 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -59.04 265.53 1.52 -57.52 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.13 Total: 8.61 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 5.87 Total: -16.08 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -6.20 Total: -97.97 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.31 Total: 3.66 kcal Total: -59.04 1.52 -57.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.627 kcal (2) G-P(sol) polarization free energy of solvation -59.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds