Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00082 * 2 1 4 4 C 1.46900 * 110.99787 * 123.94898 * 2 1 3 5 5 H 1.09005 * 109.47277 * 41.28686 * 4 2 1 6 6 C 1.52995 * 109.47639 * 281.28238 * 4 2 1 7 7 C 1.50698 * 109.47252 * 66.36386 * 6 4 2 8 8 H 1.08006 * 119.99765 * 5.70630 * 7 6 4 9 9 C 1.37875 * 120.00546 * 185.70731 * 7 6 4 10 10 N 1.31515 * 119.99558 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00231 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47144 * 90.00256 * 11 9 7 13 13 H 1.48507 * 109.46893 * 210.00112 * 11 9 7 14 14 H 1.48498 * 109.46967 * 329.99547 * 11 9 7 15 15 C 1.50707 * 109.46997 * 161.28036 * 4 2 1 16 16 C 1.33635 * 126.03687 * 217.01077 * 15 4 2 17 17 N 1.31780 * 114.49565 * 179.97438 * 16 15 4 18 18 C 1.29026 * 117.13168 * 359.97438 * 17 16 15 19 19 S 1.70984 * 110.16394 * 0.02562 * 18 17 16 20 20 H 1.09004 * 109.47078 * 310.34774 * 1 2 3 21 21 H 1.08997 * 109.46840 * 70.34334 * 1 2 3 22 22 H 1.09000 * 109.47143 * 190.34522 * 1 2 3 23 23 H 1.09001 * 109.47146 * 175.79775 * 3 2 1 24 24 H 1.08997 * 109.47333 * 295.79858 * 3 2 1 25 25 H 1.09000 * 109.47091 * 55.79370 * 3 2 1 26 26 H 1.08998 * 109.47701 * 186.36374 * 6 4 2 27 27 H 1.09000 * 109.47110 * 306.36465 * 6 4 2 28 28 H 0.97001 * 120.00142 * 179.97438 * 10 9 7 29 29 H 1.07995 * 122.75270 * 359.97438 * 16 15 4 30 30 H 1.08002 * 124.92296 * 179.73206 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.4046 -1.6724 1.2699 6 6 1.9147 0.0851 2.4066 7 6 0.4694 0.3249 2.7596 8 1 -0.3122 -0.1632 2.1962 9 6 0.1448 1.1673 3.8017 10 7 1.0966 1.7620 4.4873 11 14 -1.6468 1.4639 4.2396 12 1 -2.0839 0.4599 5.2426 13 1 -1.7984 2.8282 4.8063 14 1 -2.4820 1.3397 3.0181 15 6 3.4317 -1.1368 0.8720 16 6 4.0233 -2.2852 1.2140 17 7 5.2923 -2.3702 0.8687 18 6 5.8039 -1.3576 0.2540 19 16 4.6273 -0.1331 0.0546 20 1 -0.3633 0.6654 0.7832 21 1 -0.3633 0.3457 -0.9678 22 1 -0.3633 -1.0110 0.1845 23 1 3.0825 1.3433 0.0753 24 1 1.7082 1.8709 -0.9252 25 1 1.5863 1.9177 0.8499 26 1 2.4070 -0.4376 3.2266 27 1 2.4102 1.0407 2.2353 28 1 0.8683 2.3549 5.2203 29 1 3.5041 -3.0786 1.7310 30 1 6.8283 -1.2910 -0.0815 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259841422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = 55.750544 kcal Electronic energy + Delta-G solvation = -13868.854110 eV Core-core repulsion = 11598.507772 eV Total energy + Delta-G solvation = -2270.346338 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.19361 -37.57491 -32.80721 -31.20001 -28.47323 -27.12902 -26.07094 -24.01943 -22.47578 -20.27752 -19.33565 -17.35570 -16.52848 -15.41056 -14.86490 -14.64641 -14.03487 -13.80223 -13.46004 -13.38554 -12.60666 -12.34240 -11.60532 -11.49826 -11.17459 -10.96338 -10.92469 -10.78708 -10.67731 -10.17650 -10.03059 -9.25037 -9.05319 -8.69034 -8.55536 -8.37756 -7.41497 -6.15031 -4.17817 1.25314 1.86766 2.28736 3.21760 3.29426 3.29852 3.33276 4.32064 4.67128 4.82768 5.20636 5.55129 5.66018 5.77269 5.89957 6.13933 6.20832 6.35734 6.38480 6.55007 6.62650 6.69295 6.86023 7.31259 7.44789 7.67583 7.80246 7.85866 8.15194 8.18926 8.85551 9.45159 10.95658 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.008492 C = 0.007944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.573101 B = 3296.363680 C = 3523.937184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.534 5.534 3 C 0.021 3.979 4 C 0.148 3.852 5 H 0.090 0.910 6 C 0.001 3.999 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.062 3.938 10 N -0.888 5.888 11 Si 0.889 3.111 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.272 1.272 15 C -0.158 4.158 16 C 0.003 3.997 17 N -0.471 5.471 18 C -0.033 4.033 19 S 0.137 5.863 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.018 0.982 27 H 0.033 0.967 28 H 0.262 0.738 29 H 0.170 0.830 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 -1.931 -8.439 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.258 5.258 3 C -0.128 4.128 4 C 0.037 3.963 5 H 0.107 0.893 6 C -0.037 4.037 7 C -0.568 4.568 8 H 0.087 0.913 9 C -0.141 4.141 10 N -0.527 5.527 11 Si 0.717 3.283 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.280 4.280 16 C -0.147 4.147 17 N -0.184 5.184 18 C -0.329 4.329 19 S 0.389 5.611 20 H 0.091 0.909 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.187 0.813 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.218 -1.550 -9.079 10.131 hybrid contribution -1.472 -0.115 1.602 2.179 sum 2.746 -1.665 -7.477 8.137 Atomic orbital electron populations 1.22692 0.87200 1.02262 1.00941 1.62442 1.08707 1.13434 1.41169 1.22508 0.98500 0.90438 1.01350 1.20452 0.85849 0.98198 0.91783 0.89250 1.19790 0.97954 0.95252 0.90730 1.21358 0.91924 1.27660 1.15814 0.91293 1.25003 0.97210 0.95819 0.96050 1.69967 1.32019 1.29921 1.20760 0.86632 0.85169 0.77612 0.78879 1.20565 1.21189 1.19710 1.26387 1.01504 0.96885 1.03177 1.21569 0.89878 0.98306 1.04932 1.66286 1.11789 1.28033 1.12319 1.28399 1.05186 0.94793 1.04551 1.83994 1.01858 1.21068 1.54182 0.90901 0.93467 0.92563 0.92799 0.92474 0.92238 0.96360 0.94885 0.92827 0.81314 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.21 60.06 0.49 0.80 16 2 N -0.53 -10.06 4.86 -244.58 -1.19 -11.25 16 3 C 0.02 0.39 8.13 60.07 0.49 0.87 16 4 C 0.15 2.97 2.39 -68.86 -0.16 2.81 16 5 H 0.09 1.79 7.68 -51.93 -0.40 1.39 16 6 C 0.00 0.03 3.93 -27.89 -0.11 -0.08 16 7 C -0.53 -13.55 6.90 -34.44 -0.24 -13.78 16 8 H 0.07 1.68 5.24 -52.48 -0.27 1.41 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 11 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 C -0.16 -2.94 5.52 -35.92 -0.20 -3.14 16 16 C 0.00 0.05 11.25 -19.19 -0.22 -0.17 16 17 N -0.47 -8.34 10.54 -15.75 -0.17 -8.51 16 18 C -0.03 -0.50 12.23 51.58 0.63 0.13 16 19 S 0.14 2.19 19.69 -107.50 -2.12 0.07 16 20 H 0.07 1.49 5.19 -51.93 -0.27 1.22 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 23 H 0.05 0.95 4.39 -31.85 -0.14 0.81 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 1.26 6.26 -51.93 -0.32 0.93 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.85 6.09 -51.93 -0.32 0.54 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 30 H 0.19 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 254.61 15.07 3.84 3.84 Total: -1.00 -28.67 254.61 -6.70 -35.37 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -3.37 Total: 0.64 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 0.59 Total: -10.99 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.62 Total: -44.40 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.12 Total: 0.07 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.67 -6.70 -35.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259841422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.119 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds