Wall clock time and date at job start Mon Mar 30 2020 03:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00082 * 2 1 4 4 C 1.46900 * 110.99787 * 123.94898 * 2 1 3 5 5 H 1.09005 * 109.47277 * 41.28686 * 4 2 1 6 6 C 1.52995 * 109.47639 * 281.28238 * 4 2 1 7 7 C 1.50698 * 109.47252 * 66.36386 * 6 4 2 8 8 H 1.08006 * 119.99765 * 5.70630 * 7 6 4 9 9 C 1.37875 * 120.00546 * 185.70731 * 7 6 4 10 10 N 1.31515 * 119.99558 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00231 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47144 * 90.00256 * 11 9 7 13 13 H 1.48507 * 109.46893 * 210.00112 * 11 9 7 14 14 H 1.48498 * 109.46967 * 329.99547 * 11 9 7 15 15 C 1.50707 * 109.46997 * 161.28036 * 4 2 1 16 16 C 1.33635 * 126.03687 * 217.01077 * 15 4 2 17 17 N 1.31780 * 114.49565 * 179.97438 * 16 15 4 18 18 C 1.29026 * 117.13168 * 359.97438 * 17 16 15 19 19 S 1.70984 * 110.16394 * 0.02562 * 18 17 16 20 20 H 1.09004 * 109.47078 * 310.34774 * 1 2 3 21 21 H 1.08997 * 109.46840 * 70.34334 * 1 2 3 22 22 H 1.09000 * 109.47143 * 190.34522 * 1 2 3 23 23 H 1.09001 * 109.47146 * 175.79775 * 3 2 1 24 24 H 1.08997 * 109.47333 * 295.79858 * 3 2 1 25 25 H 1.09000 * 109.47091 * 55.79370 * 3 2 1 26 26 H 1.08998 * 109.47701 * 186.36374 * 6 4 2 27 27 H 1.09000 * 109.47110 * 306.36465 * 6 4 2 28 28 H 0.97001 * 120.00142 * 179.97438 * 10 9 7 29 29 H 1.07995 * 122.75270 * 359.97438 * 16 15 4 30 30 H 1.08002 * 124.92296 * 179.73206 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.4046 -1.6724 1.2699 6 6 1.9147 0.0851 2.4066 7 6 0.4694 0.3249 2.7596 8 1 -0.3122 -0.1632 2.1962 9 6 0.1448 1.1673 3.8017 10 7 1.0966 1.7620 4.4873 11 14 -1.6468 1.4639 4.2396 12 1 -2.0839 0.4599 5.2426 13 1 -1.7984 2.8282 4.8063 14 1 -2.4820 1.3397 3.0181 15 6 3.4317 -1.1368 0.8720 16 6 4.0233 -2.2852 1.2140 17 7 5.2923 -2.3702 0.8687 18 6 5.8039 -1.3576 0.2540 19 16 4.6273 -0.1331 0.0546 20 1 -0.3633 0.6654 0.7832 21 1 -0.3633 0.3457 -0.9678 22 1 -0.3633 -1.0110 0.1845 23 1 3.0825 1.3433 0.0753 24 1 1.7082 1.8709 -0.9252 25 1 1.5863 1.9177 0.8499 26 1 2.4070 -0.4376 3.2266 27 1 2.4102 1.0407 2.2353 28 1 0.8683 2.3549 5.2203 29 1 3.5041 -3.0786 1.7310 30 1 6.8283 -1.2910 -0.0815 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259841422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:34 Heat of formation + Delta-G solvation = 35.914711 kcal Electronic energy + Delta-G solvation = -13869.714256 eV Core-core repulsion = 11598.507772 eV Total energy + Delta-G solvation = -2271.206484 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57657 -39.12796 -34.79929 -32.70386 -30.23299 -28.61452 -27.67381 -25.47513 -24.27427 -21.78820 -20.73843 -18.89427 -18.36675 -16.85419 -16.68883 -16.24688 -15.64864 -15.16893 -14.82971 -14.72908 -14.40794 -14.13961 -13.20385 -13.03269 -12.93102 -12.66630 -12.49458 -12.42994 -12.23405 -11.90943 -11.81616 -11.14244 -10.59306 -10.38019 -10.04134 -9.77953 -9.02279 -8.20388 -6.28314 -0.07246 0.55981 0.96981 1.39241 1.40476 1.49794 1.97313 2.38954 3.10586 3.23633 3.59047 4.04823 4.30088 4.40084 4.46859 4.70014 4.71822 4.80526 4.84192 5.04804 5.13343 5.27133 5.31054 5.41509 5.47775 5.75498 6.13580 6.18363 6.22975 6.82952 6.84434 7.38370 8.91160 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.008492 C = 0.007944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.573101 B = 3296.363680 C = 3523.937184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.528 5.528 3 C 0.025 3.975 4 C 0.160 3.840 5 H 0.087 0.913 6 C 0.012 3.988 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.954 3.046 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.257 1.257 15 C -0.196 4.196 16 C 0.004 3.996 17 N -0.497 5.497 18 C -0.013 4.013 19 S 0.161 5.839 20 H 0.046 0.954 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.024 0.976 26 H -0.017 1.017 27 H 0.011 0.989 28 H 0.261 0.739 29 H 0.176 0.824 30 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -2.238 -10.051 10.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.251 5.251 3 C -0.124 4.124 4 C 0.049 3.951 5 H 0.105 0.895 6 C -0.026 4.026 7 C -0.567 4.567 8 H 0.099 0.901 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.779 3.221 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.181 1.181 15 C -0.318 4.318 16 C -0.146 4.146 17 N -0.210 5.210 18 C -0.309 4.309 19 S 0.414 5.586 20 H 0.065 0.935 21 H 0.093 0.907 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.043 0.957 26 H 0.001 0.999 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.141 -1.861 -10.714 11.636 hybrid contribution -1.338 -0.027 2.046 2.444 sum 2.803 -1.888 -8.669 9.304 Atomic orbital electron populations 1.22683 0.86624 1.02132 1.01544 1.62536 1.09199 1.13456 1.39895 1.22488 0.98781 0.89875 1.01220 1.20119 0.87393 0.97314 0.90244 0.89493 1.19613 0.96725 0.94513 0.91791 1.21767 0.92947 1.26737 1.15291 0.90095 1.25852 1.01285 0.95894 0.96240 1.70109 1.34219 1.31152 1.21636 0.85608 0.80379 0.77123 0.78980 1.20363 1.21429 1.18059 1.26228 1.01489 0.98301 1.05776 1.21775 0.90274 0.98385 1.04194 1.66362 1.11581 1.29164 1.13936 1.29132 1.06487 0.93344 1.01977 1.83810 1.01041 1.20541 1.53225 0.93539 0.90708 0.91899 0.92318 0.89706 0.95706 0.99899 0.97109 0.93047 0.80738 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.21 127.69 1.05 1.67 16 2 N -0.53 -19.30 4.86 -927.72 -4.50 -23.80 16 3 C 0.03 0.91 8.13 127.69 1.04 1.95 16 4 C 0.16 6.45 2.39 44.17 0.11 6.55 16 5 H 0.09 3.48 7.68 -2.38 -0.02 3.46 16 6 C 0.01 0.61 3.93 29.85 0.12 0.73 16 7 C -0.53 -27.48 6.90 25.60 0.18 -27.30 16 8 H 0.08 3.93 5.24 -2.91 -0.02 3.92 16 9 C 0.01 0.30 5.46 84.65 0.46 0.76 16 10 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 11 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 13 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 15 C -0.20 -7.20 5.52 24.64 0.14 -7.06 16 16 C 0.00 0.13 11.25 83.66 0.94 1.07 16 17 N -0.50 -16.70 10.54 -203.75 -2.15 -18.85 16 18 C -0.01 -0.36 12.23 130.65 1.60 1.24 16 19 S 0.16 4.85 19.69 -56.49 -1.11 3.74 16 20 H 0.05 1.86 5.19 -2.38 -0.01 1.85 16 21 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.06 2.06 7.67 -2.39 -0.02 2.04 16 23 H 0.06 2.03 4.39 -15.15 -0.07 1.96 16 24 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.02 1.05 6.26 -2.39 -0.01 1.04 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.01 0.57 6.09 -2.39 -0.01 0.56 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.18 5.73 8.06 -2.91 -0.02 5.70 16 30 H 0.23 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -62.00 254.61 1.25 -60.74 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.08 Total: 8.68 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 5.62 Total: -20.40 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -6.37 Total: -97.09 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.11 Total: 3.74 kcal Total: -62.00 1.25 -60.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259841422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.658 kcal (2) G-P(sol) polarization free energy of solvation -61.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds