Wall clock time and date at job start Mon Mar 30 2020 03:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38226 * 119.98689 * 2 1 4 4 C 1.38185 * 120.04888 * 179.70234 * 3 2 1 5 5 C 1.50703 * 119.98980 * 180.25744 * 4 3 2 6 6 H 1.08998 * 109.47042 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46969 * 60.00273 * 5 4 3 8 8 C 1.50703 * 109.47043 * 300.00364 * 5 4 3 9 9 H 1.08000 * 119.99845 * 359.97438 * 8 5 4 10 10 C 1.37875 * 119.99991 * 179.97438 * 8 5 4 11 11 N 1.31511 * 119.99986 * 359.97438 * 10 8 5 12 12 Si 1.86792 * 120.00142 * 179.97438 * 10 8 5 13 13 H 1.48497 * 109.47014 * 59.99988 * 12 10 8 14 14 H 1.48496 * 109.47601 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47264 * 300.00362 * 12 10 8 16 16 C 1.38503 * 120.02702 * 0.28222 * 4 3 2 17 17 F 1.35092 * 120.01297 * 179.97438 * 16 4 3 18 18 C 1.38398 * 119.97068 * 359.97438 * 16 4 3 19 19 C 1.38445 * 119.95077 * 359.97438 * 18 16 4 20 20 F 1.35095 * 120.01243 * 180.02562 * 19 18 16 21 21 H 1.09001 * 109.47180 * 89.99044 * 1 2 3 22 22 H 1.08992 * 109.47037 * 209.99866 * 1 2 3 23 23 H 1.09005 * 109.46497 * 329.99363 * 1 2 3 24 24 H 1.08002 * 119.97943 * 359.97438 * 3 2 1 25 25 H 1.09001 * 109.46644 * 180.02562 * 7 5 4 26 26 H 1.08992 * 109.46756 * 300.00073 * 7 5 4 27 27 H 1.08998 * 109.46726 * 60.00399 * 7 5 4 28 28 H 0.96998 * 120.00129 * 179.97438 * 11 10 8 29 29 H 1.08002 * 120.02147 * 179.97438 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1972 0.0000 4 6 3.5797 1.1987 0.0062 5 6 4.3316 2.5048 0.0121 6 1 5.4035 2.3070 0.0161 7 6 3.9553 3.3042 1.2612 8 6 3.9720 3.2970 -1.2185 9 1 3.2696 2.8946 -1.9335 10 6 4.5396 4.5352 -1.4315 11 7 5.3945 5.0253 -0.5606 12 14 4.0944 5.5168 -2.9571 13 1 2.6340 5.7857 -2.9640 14 1 4.8342 6.8044 -2.9508 15 1 4.4606 4.7410 -4.1693 16 6 4.2741 0.0003 0.0065 17 9 5.6250 0.0022 0.0121 18 6 3.5834 -1.1989 0.0012 19 6 2.1990 -1.1992 -0.0040 20 9 1.5235 -2.3691 -0.0087 21 1 -0.3633 0.0002 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3632 0.8900 0.5140 24 1 1.6573 2.1322 -0.0004 25 1 4.4988 4.2491 1.2652 26 1 2.8835 3.5020 1.2568 27 1 4.2155 2.7312 2.1512 28 1 5.7942 5.8963 -0.7106 29 1 4.1241 -2.1339 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955372.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:23 Heat of formation + Delta-G solvation = -99.387065 kcal Electronic energy + Delta-G solvation = -15359.101138 eV Core-core repulsion = 12495.894391 eV Total energy + Delta-G solvation = -2863.206747 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.93251 -49.88318 -40.12165 -36.36506 -33.65487 -33.09395 -29.85921 -27.57010 -27.22654 -24.71211 -23.08924 -21.21708 -19.12212 -18.61297 -17.90325 -16.93363 -16.86823 -16.29940 -16.24564 -15.82962 -15.34208 -14.83090 -14.66870 -14.19169 -13.82024 -13.67132 -13.26710 -13.04429 -12.85416 -12.76535 -12.49091 -12.32878 -12.14516 -11.97158 -11.40378 -11.04811 -10.47865 -9.82041 -9.28812 -8.10649 -6.25947 0.07346 0.14499 1.44258 1.45334 1.52957 2.39422 2.52388 2.97026 3.17411 3.56031 3.71945 3.82298 3.99749 4.25879 4.63549 4.75217 4.81559 4.85763 4.92494 4.98770 5.15354 5.16171 5.25837 5.31537 5.39445 5.60196 5.87127 5.92273 6.04960 6.28263 6.81887 7.42367 8.94063 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.008480 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.585888 B = 3300.979207 C = 3683.132283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.063 4.063 4 C -0.093 4.093 5 C 0.070 3.930 6 H 0.004 0.996 7 C -0.121 4.121 8 C -0.525 4.525 9 H 0.058 0.942 10 C 0.016 3.984 11 N -0.916 5.916 12 Si 0.957 3.043 13 H -0.264 1.264 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.085 3.915 17 F -0.146 7.146 18 C -0.179 4.179 19 C 0.098 3.902 20 F -0.132 7.132 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.145 0.855 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 -9.159 1.403 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.122 4.122 3 C -0.081 4.081 4 C -0.094 4.094 5 C 0.051 3.949 6 H 0.022 0.978 7 C -0.179 4.179 8 C -0.563 4.563 9 H 0.076 0.924 10 C -0.184 4.184 11 N -0.555 5.555 12 Si 0.782 3.218 13 H -0.189 1.189 14 H -0.210 1.210 15 H -0.201 1.201 16 C 0.066 3.934 17 F -0.125 7.125 18 C -0.199 4.199 19 C 0.078 3.922 20 F -0.110 7.110 21 H 0.103 0.897 22 H 0.097 0.903 23 H 0.104 0.896 24 H 0.163 0.837 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.409 -9.050 1.443 12.438 hybrid contribution 0.654 0.475 -0.703 1.071 sum -7.755 -8.575 0.740 11.585 Atomic orbital electron populations 1.20780 0.87521 1.04333 1.03800 1.20261 0.98870 0.90778 1.02295 1.20756 0.91963 0.98104 0.97297 1.20665 0.95608 0.95032 0.98054 1.17699 0.93529 0.88235 0.95425 0.97795 1.21634 1.00055 1.01138 0.95096 1.21324 1.26364 1.02346 1.06278 0.92400 1.25732 0.94748 0.98561 0.99313 1.70010 1.29953 1.18824 1.36753 0.85623 0.78807 0.77644 0.79690 1.18914 1.21044 1.20110 1.17466 0.76811 0.94051 1.05110 1.91431 1.29619 1.97320 1.94131 1.21001 0.93513 0.98236 1.07129 1.16990 0.88801 0.81293 1.05097 1.91465 1.79850 1.45610 1.94123 0.89730 0.90259 0.89555 0.83732 0.91990 0.93819 0.95844 0.92820 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.83 71.24 0.70 -1.64 15 2 C -0.12 -3.61 5.89 -19.81 -0.12 -3.73 15 3 C -0.06 -2.26 8.36 22.25 0.19 -2.08 15 4 C -0.09 -3.94 4.74 -19.81 -0.09 -4.03 15 5 C 0.07 3.52 2.46 -12.28 -0.03 3.49 15 6 H 0.00 0.22 7.13 -2.39 -0.02 0.21 15 7 C -0.12 -5.78 8.78 71.98 0.63 -5.15 15 8 C -0.53 -28.24 8.24 25.60 0.21 -28.02 15 9 H 0.06 3.03 7.60 -2.91 -0.02 3.01 15 10 C 0.02 0.84 5.30 84.65 0.45 1.29 15 11 N -0.92 -52.24 11.32 21.45 0.24 -52.00 15 12 Si 0.96 42.60 29.54 68.60 2.03 44.62 15 13 H -0.26 -11.19 7.11 99.48 0.71 -10.49 15 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 16 C 0.08 3.37 7.25 22.37 0.16 3.53 15 17 F -0.15 -6.25 16.19 44.97 0.73 -5.53 15 18 C -0.18 -5.80 10.01 22.36 0.22 -5.57 15 19 C 0.10 2.95 7.24 22.37 0.16 3.11 15 20 F -0.13 -3.62 16.48 44.97 0.74 -2.88 15 21 H 0.08 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.08 1.52 7.64 -2.39 -0.02 1.50 15 23 H 0.09 1.65 8.09 -2.38 -0.02 1.63 15 24 H 0.14 5.04 7.57 -2.91 -0.02 5.01 15 25 H 0.06 3.28 6.07 -2.39 -0.01 3.26 15 26 H 0.04 1.90 7.39 -2.39 -0.02 1.88 15 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 15 29 H 0.16 4.32 8.06 -2.91 -0.02 4.30 15 Total: -1.00 -58.76 257.07 7.38 -51.38 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 1.16 Total: 3.19 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 2.49 Total: -38.79 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.24 Total: -52.00 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 1.47 Total: -8.40 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -58.76 7.38 -51.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955372.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.009 kcal (2) G-P(sol) polarization free energy of solvation -58.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds