Wall clock time and date at job start Mon Mar 30 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38412 * 120.03083 * 2 1 4 4 F 1.35104 * 120.01248 * 0.03859 * 3 2 1 5 5 C 1.38471 * 119.97659 * 180.02562 * 3 2 1 6 6 C 1.38203 * 120.02865 * 0.02562 * 5 3 2 7 7 C 1.50699 * 119.97720 * 179.97438 * 6 5 3 8 8 H 1.09000 * 109.47247 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.47265 * 239.99853 * 7 6 5 10 10 C 1.50706 * 109.46817 * 119.99977 * 7 6 5 11 11 H 1.07995 * 120.00167 * 359.72198 * 10 7 6 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10 18 18 C 1.38208 * 120.04747 * 0.23321 * 6 5 3 19 19 C 1.38427 * 120.02232 * 180.02562 * 2 1 3 20 20 F 1.35099 * 120.01150 * 359.97438 * 19 2 1 21 21 H 1.08998 * 109.46918 * 90.00195 * 1 2 3 22 22 H 1.08998 * 109.47049 * 210.00418 * 1 2 3 23 23 H 1.09003 * 109.46423 * 330.00485 * 1 2 3 24 24 H 1.08001 * 119.98496 * 180.02562 * 5 3 2 25 25 H 1.09000 * 109.47140 * 300.00252 * 9 7 6 26 26 H 1.09001 * 109.47230 * 59.99396 * 9 7 6 27 27 H 1.09001 * 109.47375 * 180.02562 * 9 7 6 28 28 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 29 29 H 1.08000 * 119.98776 * 179.72683 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1983 0.0000 4 9 1.5251 2.3689 0.0008 5 6 3.5844 1.1970 -0.0005 6 6 4.2749 -0.0002 -0.0016 7 6 5.7819 -0.0003 -0.0028 8 1 6.1453 1.0274 -0.0021 9 6 6.2909 -0.7210 -1.2527 10 6 6.2851 -0.7113 1.2271 11 1 5.5839 -1.1180 1.9405 12 6 7.6409 -0.8378 1.4438 13 7 8.4948 -0.3377 0.5777 14 14 8.2646 -1.7198 2.9678 15 1 8.4289 -3.1655 2.6708 16 1 9.5734 -1.1455 3.3712 17 1 7.2875 -1.5494 4.0731 18 6 3.5844 -1.1974 -0.0070 19 6 2.1996 -1.1985 -0.0005 20 9 1.5248 -2.3689 -0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3632 0.8901 0.5138 24 1 4.1251 2.1319 -0.0001 25 1 5.9275 -1.7486 -1.2529 26 1 5.9269 -0.2068 -2.1422 27 1 7.3810 -0.7214 -1.2533 28 1 9.4486 -0.4265 0.7305 29 1 4.1249 -2.1323 -0.0123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259987285.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:06 Heat of formation + Delta-G solvation = -87.444497 kcal Electronic energy + Delta-G solvation = -15238.563650 eV Core-core repulsion = 12375.874771 eV Total energy + Delta-G solvation = -2862.688878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.63818 -48.60225 -38.67074 -34.72482 -32.33614 -30.08304 -29.72141 -26.10772 -25.20082 -22.55607 -21.99998 -19.98385 -17.13438 -17.02224 -16.08457 -15.69831 -15.34879 -15.08425 -14.91752 -14.65372 -13.91722 -13.03598 -13.00611 -12.81809 -12.43832 -12.25810 -11.74787 -11.40815 -11.24065 -11.17002 -10.95978 -10.67555 -10.32879 -10.22440 -9.66669 -9.13070 -8.47900 -8.24493 -8.01235 -6.11321 -4.19199 1.50142 1.55472 3.25274 3.32481 3.36090 3.93613 4.29409 4.36975 4.86159 4.94978 5.07371 5.20823 5.46457 5.65991 5.77264 5.83660 5.96943 6.29347 6.38298 6.48531 6.59258 6.72414 6.89462 7.00716 7.10218 7.36054 7.59203 7.79294 7.96718 8.23868 8.82924 9.46430 10.94359 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.007730 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.101139 B = 3621.190094 C = 3898.878594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.187 4.187 3 C 0.118 3.882 4 F -0.141 7.141 5 C -0.169 4.169 6 C 0.020 3.980 7 C 0.070 3.930 8 H 0.042 0.958 9 C -0.134 4.134 10 C -0.513 4.513 11 H 0.059 0.941 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.895 3.105 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.149 4.149 19 C 0.117 3.883 20 F -0.140 7.140 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.136 0.864 25 H 0.031 0.969 26 H 0.011 0.989 27 H 0.089 0.911 28 H 0.263 0.737 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 0.558 -1.931 10.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.189 4.189 3 C 0.099 3.901 4 F -0.119 7.119 5 C -0.188 4.188 6 C 0.020 3.980 7 C 0.052 3.948 8 H 0.060 0.940 9 C -0.192 4.192 10 C -0.551 4.551 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.168 4.168 19 C 0.098 3.902 20 F -0.119 7.119 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.154 0.846 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.251 0.581 -1.959 10.453 hybrid contribution 0.185 -0.460 0.858 0.991 sum -10.066 0.121 -1.102 10.127 Atomic orbital electron populations 1.20523 0.90065 1.03027 1.02412 1.19557 0.97103 0.91242 1.10993 1.17165 0.89785 0.80079 1.03059 1.91442 1.80565 1.45902 1.94010 1.21212 0.91310 1.00313 1.05961 1.20424 0.99259 0.89963 0.88400 1.17990 0.82998 0.98341 0.95489 0.94008 1.21814 1.04642 0.97855 0.94854 1.21063 0.91677 1.36773 1.05630 0.92243 1.24943 0.96795 0.95385 0.96617 1.69872 1.02245 1.45146 1.35310 0.86540 0.78276 0.79791 0.83141 1.20542 1.21136 1.19808 1.21166 0.90830 1.00936 1.03867 1.17244 0.89918 0.80082 1.02972 1.91443 1.80525 1.45907 1.93977 0.91312 0.91263 0.91296 0.84592 0.95028 0.96961 0.89244 0.92754 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.66 36.01 0.35 -1.02 15 2 C -0.19 -3.11 5.89 -104.49 -0.62 -3.72 15 3 C 0.12 2.05 7.24 -39.43 -0.29 1.76 15 4 F -0.14 -2.30 16.48 2.25 0.04 -2.26 15 5 C -0.17 -3.15 9.65 -39.51 -0.38 -3.53 15 6 C 0.02 0.41 4.73 -104.65 -0.50 -0.09 15 7 C 0.07 1.66 2.48 -92.92 -0.23 1.43 15 8 H 0.04 1.05 7.87 -51.93 -0.41 0.64 15 9 C -0.13 -3.05 8.78 37.16 0.33 -2.72 15 10 C -0.51 -13.35 8.25 -34.44 -0.28 -13.63 15 11 H 0.06 1.55 7.61 -52.49 -0.40 1.15 15 12 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15 13 N -0.89 -24.17 11.32 55.43 0.63 -23.55 15 14 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 15 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 18 C -0.15 -2.89 8.70 -39.51 -0.34 -3.23 15 19 C 0.12 2.07 7.24 -39.43 -0.29 1.79 15 20 F -0.14 -2.36 16.48 2.25 0.04 -2.33 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.07 0.86 7.64 -51.93 -0.40 0.46 15 23 H 0.07 0.85 7.64 -51.93 -0.40 0.45 15 24 H 0.14 2.38 7.94 -52.49 -0.42 1.96 15 25 H 0.03 0.68 7.37 -51.93 -0.38 0.30 15 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 15 27 H 0.09 2.24 6.07 -51.93 -0.32 1.93 15 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 29 H 0.14 2.76 7.56 -52.49 -0.40 2.36 15 LS Contribution 257.35 15.07 3.88 3.88 Total: -1.00 -26.22 257.35 -5.88 -32.09 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -3.09 Total: -2.02 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.34 Total: -21.37 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.63 Total: -23.55 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.07 Total: -4.59 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.22 -5.88 -32.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987285.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.353 kcal (2) G-P(sol) polarization free energy of solvation -26.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds