Wall clock time and date at job start Mon Mar 30 2020 03:11:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38412 * 120.03083 * 2 1
4 4 F 1.35104 * 120.01248 * 0.03859 * 3 2 1
5 5 C 1.38471 * 119.97659 * 180.02562 * 3 2 1
6 6 C 1.38203 * 120.02865 * 0.02562 * 5 3 2
7 7 C 1.50699 * 119.97720 * 179.97438 * 6 5 3
8 8 H 1.09000 * 109.47247 * 0.02562 * 7 6 5
9 9 C 1.52997 * 109.47265 * 239.99853 * 7 6 5
10 10 C 1.50706 * 109.46817 * 119.99977 * 7 6 5
11 11 H 1.07995 * 120.00167 * 359.72198 * 10 7 6
12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6
13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7
14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7
15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10
16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10
17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10
18 18 C 1.38208 * 120.04747 * 0.23321 * 6 5 3
19 19 C 1.38427 * 120.02232 * 180.02562 * 2 1 3
20 20 F 1.35099 * 120.01150 * 359.97438 * 19 2 1
21 21 H 1.08998 * 109.46918 * 90.00195 * 1 2 3
22 22 H 1.08998 * 109.47049 * 210.00418 * 1 2 3
23 23 H 1.09003 * 109.46423 * 330.00485 * 1 2 3
24 24 H 1.08001 * 119.98496 * 180.02562 * 5 3 2
25 25 H 1.09000 * 109.47140 * 300.00252 * 9 7 6
26 26 H 1.09001 * 109.47230 * 59.99396 * 9 7 6
27 27 H 1.09001 * 109.47375 * 180.02562 * 9 7 6
28 28 H 0.96996 * 119.99730 * 179.97438 * 13 12 10
29 29 H 1.08000 * 119.98776 * 179.72683 * 18 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1997 1.1983 0.0000
4 9 1.5251 2.3689 0.0008
5 6 3.5844 1.1970 -0.0005
6 6 4.2749 -0.0002 -0.0016
7 6 5.7819 -0.0003 -0.0028
8 1 6.1453 1.0274 -0.0021
9 6 6.2909 -0.7210 -1.2527
10 6 6.2851 -0.7113 1.2271
11 1 5.5839 -1.1180 1.9405
12 6 7.6409 -0.8378 1.4438
13 7 8.4948 -0.3377 0.5777
14 14 8.2646 -1.7198 2.9678
15 1 8.4289 -3.1655 2.6708
16 1 9.5734 -1.1455 3.3712
17 1 7.2875 -1.5494 4.0731
18 6 3.5844 -1.1974 -0.0070
19 6 2.1996 -1.1985 -0.0005
20 9 1.5248 -2.3689 -0.0005
21 1 -0.3633 0.0000 -1.0277
22 1 -0.3633 -0.8899 0.5139
23 1 -0.3632 0.8901 0.5138
24 1 4.1251 2.1319 -0.0001
25 1 5.9275 -1.7486 -1.2529
26 1 5.9269 -0.2068 -2.1422
27 1 7.3810 -0.7214 -1.2533
28 1 9.4486 -0.4265 0.7305
29 1 4.1249 -2.1323 -0.0123
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259987285.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:06
Heat of formation + Delta-G solvation = -87.444497 kcal
Electronic energy + Delta-G solvation = -15238.563650 eV
Core-core repulsion = 12375.874771 eV
Total energy + Delta-G solvation = -2862.688878 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 226.086 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-48.63818 -48.60225 -38.67074 -34.72482 -32.33614 -30.08304 -29.72141 -26.10772
-25.20082 -22.55607 -21.99998 -19.98385 -17.13438 -17.02224 -16.08457 -15.69831
-15.34879 -15.08425 -14.91752 -14.65372 -13.91722 -13.03598 -13.00611 -12.81809
-12.43832 -12.25810 -11.74787 -11.40815 -11.24065 -11.17002 -10.95978 -10.67555
-10.32879 -10.22440 -9.66669 -9.13070 -8.47900 -8.24493 -8.01235 -6.11321
-4.19199 1.50142 1.55472 3.25274 3.32481 3.36090 3.93613 4.29409
4.36975 4.86159 4.94978 5.07371 5.20823 5.46457 5.65991 5.77264
5.83660 5.96943 6.29347 6.38298 6.48531 6.59258 6.72414 6.89462
7.00716 7.10218 7.36054 7.59203 7.79294 7.96718 8.23868 8.82924
9.46430 10.94359
Molecular weight = 226.09amu
Principal moments of inertia in cm(-1)
A = 0.033561 B = 0.007730 C = 0.007180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 834.101139 B = 3621.190094 C = 3898.878594
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C -0.187 4.187
3 C 0.118 3.882
4 F -0.141 7.141
5 C -0.169 4.169
6 C 0.020 3.980
7 C 0.070 3.930
8 H 0.042 0.958
9 C -0.134 4.134
10 C -0.513 4.513
11 H 0.059 0.941
12 C 0.065 3.935
13 N -0.888 5.888
14 Si 0.895 3.105
15 H -0.279 1.279
16 H -0.286 1.286
17 H -0.273 1.273
18 C -0.149 4.149
19 C 0.117 3.883
20 F -0.140 7.140
21 H 0.068 0.932
22 H 0.068 0.932
23 H 0.068 0.932
24 H 0.136 0.864
25 H 0.031 0.969
26 H 0.011 0.989
27 H 0.089 0.911
28 H 0.263 0.737
29 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.391 0.558 -1.931 10.584
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.189 4.189
3 C 0.099 3.901
4 F -0.119 7.119
5 C -0.188 4.188
6 C 0.020 3.980
7 C 0.052 3.948
8 H 0.060 0.940
9 C -0.192 4.192
10 C -0.551 4.551
11 H 0.078 0.922
12 C -0.137 4.137
13 N -0.526 5.526
14 Si 0.723 3.277
15 H -0.205 1.205
16 H -0.211 1.211
17 H -0.198 1.198
18 C -0.168 4.168
19 C 0.098 3.902
20 F -0.119 7.119
21 H 0.087 0.913
22 H 0.087 0.913
23 H 0.087 0.913
24 H 0.154 0.846
25 H 0.050 0.950
26 H 0.030 0.970
27 H 0.108 0.892
28 H 0.072 0.928
29 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -10.251 0.581 -1.959 10.453
hybrid contribution 0.185 -0.460 0.858 0.991
sum -10.066 0.121 -1.102 10.127
Atomic orbital electron populations
1.20523 0.90065 1.03027 1.02412 1.19557 0.97103 0.91242 1.10993
1.17165 0.89785 0.80079 1.03059 1.91442 1.80565 1.45902 1.94010
1.21212 0.91310 1.00313 1.05961 1.20424 0.99259 0.89963 0.88400
1.17990 0.82998 0.98341 0.95489 0.94008 1.21814 1.04642 0.97855
0.94854 1.21063 0.91677 1.36773 1.05630 0.92243 1.24943 0.96795
0.95385 0.96617 1.69872 1.02245 1.45146 1.35310 0.86540 0.78276
0.79791 0.83141 1.20542 1.21136 1.19808 1.21166 0.90830 1.00936
1.03867 1.17244 0.89918 0.80082 1.02972 1.91443 1.80525 1.45907
1.93977 0.91312 0.91263 0.91296 0.84592 0.95028 0.96961 0.89244
0.92754 0.83987
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.37 9.66 36.01 0.35 -1.02 15
2 C -0.19 -3.11 5.89 -104.49 -0.62 -3.72 15
3 C 0.12 2.05 7.24 -39.43 -0.29 1.76 15
4 F -0.14 -2.30 16.48 2.25 0.04 -2.26 15
5 C -0.17 -3.15 9.65 -39.51 -0.38 -3.53 15
6 C 0.02 0.41 4.73 -104.65 -0.50 -0.09 15
7 C 0.07 1.66 2.48 -92.92 -0.23 1.43 15
8 H 0.04 1.05 7.87 -51.93 -0.41 0.64 15
9 C -0.13 -3.05 8.78 37.16 0.33 -2.72 15
10 C -0.51 -13.35 8.25 -34.44 -0.28 -13.63 15
11 H 0.06 1.55 7.61 -52.49 -0.40 1.15 15
12 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15
13 N -0.89 -24.17 11.32 55.43 0.63 -23.55 15
14 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 15
15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15
16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15
17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15
18 C -0.15 -2.89 8.70 -39.51 -0.34 -3.23 15
19 C 0.12 2.07 7.24 -39.43 -0.29 1.79 15
20 F -0.14 -2.36 16.48 2.25 0.04 -2.33 15
21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15
22 H 0.07 0.86 7.64 -51.93 -0.40 0.46 15
23 H 0.07 0.85 7.64 -51.93 -0.40 0.45 15
24 H 0.14 2.38 7.94 -52.49 -0.42 1.96 15
25 H 0.03 0.68 7.37 -51.93 -0.38 0.30 15
26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 15
27 H 0.09 2.24 6.07 -51.93 -0.32 1.93 15
28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15
29 H 0.14 2.76 7.56 -52.49 -0.40 2.36 15
LS Contribution 257.35 15.07 3.88 3.88
Total: -1.00 -26.22 257.35 -5.88 -32.09
By element:
Atomic # 1 Polarization: 1.07 SS G_CDS: -3.09 Total: -2.02 kcal
Atomic # 6 Polarization: -19.03 SS G_CDS: -2.34 Total: -21.37 kcal
Atomic # 7 Polarization: -24.17 SS G_CDS: 0.63 Total: -23.55 kcal
Atomic # 9 Polarization: -4.67 SS G_CDS: 0.07 Total: -4.59 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -26.22 -5.88 -32.09 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259987285.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.353 kcal
(2) G-P(sol) polarization free energy of solvation -26.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.569 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.444 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds