Wall clock time and date at job start Mon Mar 30 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38412 * 120.03083 * 2 1 4 4 F 1.35104 * 120.01248 * 0.03859 * 3 2 1 5 5 C 1.38471 * 119.97659 * 180.02562 * 3 2 1 6 6 C 1.38203 * 120.02865 * 0.02562 * 5 3 2 7 7 C 1.50699 * 119.97720 * 179.97438 * 6 5 3 8 8 H 1.09000 * 109.47247 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.47265 * 239.99853 * 7 6 5 10 10 C 1.50706 * 109.46817 * 119.99977 * 7 6 5 11 11 H 1.07995 * 120.00167 * 359.72198 * 10 7 6 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10 18 18 C 1.38208 * 120.04747 * 0.23321 * 6 5 3 19 19 C 1.38427 * 120.02232 * 180.02562 * 2 1 3 20 20 F 1.35099 * 120.01150 * 359.97438 * 19 2 1 21 21 H 1.08998 * 109.46918 * 90.00195 * 1 2 3 22 22 H 1.08998 * 109.47049 * 210.00418 * 1 2 3 23 23 H 1.09003 * 109.46423 * 330.00485 * 1 2 3 24 24 H 1.08001 * 119.98496 * 180.02562 * 5 3 2 25 25 H 1.09000 * 109.47140 * 300.00252 * 9 7 6 26 26 H 1.09001 * 109.47230 * 59.99396 * 9 7 6 27 27 H 1.09001 * 109.47375 * 180.02562 * 9 7 6 28 28 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 29 29 H 1.08000 * 119.98776 * 179.72683 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1983 0.0000 4 9 1.5251 2.3689 0.0008 5 6 3.5844 1.1970 -0.0005 6 6 4.2749 -0.0002 -0.0016 7 6 5.7819 -0.0003 -0.0028 8 1 6.1453 1.0274 -0.0021 9 6 6.2909 -0.7210 -1.2527 10 6 6.2851 -0.7113 1.2271 11 1 5.5839 -1.1180 1.9405 12 6 7.6409 -0.8378 1.4438 13 7 8.4948 -0.3377 0.5777 14 14 8.2646 -1.7198 2.9678 15 1 8.4289 -3.1655 2.6708 16 1 9.5734 -1.1455 3.3712 17 1 7.2875 -1.5494 4.0731 18 6 3.5844 -1.1974 -0.0070 19 6 2.1996 -1.1985 -0.0005 20 9 1.5248 -2.3689 -0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3632 0.8901 0.5138 24 1 4.1251 2.1319 -0.0001 25 1 5.9275 -1.7486 -1.2529 26 1 5.9269 -0.2068 -2.1422 27 1 7.3810 -0.7214 -1.2533 28 1 9.4486 -0.4265 0.7305 29 1 4.1249 -2.1323 -0.0123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259987285.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:06 Heat of formation + Delta-G solvation = -99.204528 kcal Electronic energy + Delta-G solvation = -15239.073603 eV Core-core repulsion = 12375.874771 eV Total energy + Delta-G solvation = -2863.198832 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.98411 -49.97416 -40.16079 -36.44349 -34.01248 -31.72049 -31.18783 -27.52986 -27.16258 -24.02951 -23.52990 -21.60996 -18.75950 -18.48745 -17.82880 -17.06489 -16.82798 -16.53667 -16.46088 -16.27127 -15.28650 -14.76230 -14.55249 -14.09231 -13.85250 -13.55033 -13.43214 -13.13179 -12.88987 -12.71303 -12.54677 -12.36247 -12.16031 -12.02150 -11.43953 -11.02382 -10.48652 -9.68217 -9.48479 -8.11709 -6.25663 0.05144 0.12021 1.42759 1.44819 1.53908 2.38402 2.52134 2.89161 3.16845 3.45103 3.67031 3.74577 3.99387 4.34409 4.58464 4.68844 4.74628 4.82042 4.92812 4.95126 5.09343 5.13510 5.21657 5.24689 5.38674 5.61819 5.87837 5.93130 6.04370 6.29655 6.81820 7.42660 8.92897 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.007730 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.101139 B = 3621.190094 C = 3898.878594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.175 4.175 3 C 0.121 3.879 4 F -0.132 7.132 5 C -0.171 4.171 6 C -0.001 4.001 7 C 0.070 3.930 8 H 0.018 0.982 9 C -0.125 4.125 10 C -0.526 4.526 11 H 0.054 0.946 12 C 0.019 3.981 13 N -0.913 5.913 14 Si 0.953 3.047 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.271 1.271 18 C -0.156 4.156 19 C 0.118 3.882 20 F -0.133 7.133 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.141 0.859 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.263 0.737 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 0.364 -1.620 12.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.176 4.176 3 C 0.102 3.898 4 F -0.110 7.110 5 C -0.190 4.190 6 C -0.001 4.001 7 C 0.052 3.948 8 H 0.036 0.964 9 C -0.183 4.183 10 C -0.564 4.564 11 H 0.072 0.928 12 C -0.180 4.180 13 N -0.552 5.552 14 Si 0.778 3.222 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.174 4.174 19 C 0.098 3.902 20 F -0.112 7.112 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.159 0.841 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.998 0.386 -1.650 12.117 hybrid contribution 0.640 -0.369 0.736 1.043 sum -11.358 0.017 -0.914 11.394 Atomic orbital electron populations 1.20665 0.87264 1.04220 1.03965 1.19905 0.99073 0.90264 1.08389 1.17069 0.89236 0.80703 1.02815 1.91467 1.80208 1.45464 1.93892 1.21241 0.92218 0.99884 1.05685 1.20069 0.97586 0.91242 0.91221 1.17827 0.85382 0.96598 0.95001 0.96366 1.21664 1.02851 0.98277 0.95484 1.21340 0.91852 1.36744 1.06425 0.92819 1.25646 0.97093 0.96144 0.99122 1.69988 1.02372 1.46167 1.36702 0.85635 0.77628 0.78842 0.80054 1.20027 1.20910 1.19579 1.21088 0.91807 1.00189 1.04366 1.17149 0.89281 0.80775 1.02952 1.91460 1.80190 1.45621 1.93905 0.89444 0.90195 0.90054 0.84104 0.94667 0.95176 0.91797 0.92771 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 9.66 71.24 0.69 -1.68 15 2 C -0.17 -5.31 5.89 -19.78 -0.12 -5.43 15 3 C 0.12 3.93 7.24 22.37 0.16 4.09 15 4 F -0.13 -3.96 16.48 44.97 0.74 -3.21 15 5 C -0.17 -6.25 9.65 22.32 0.22 -6.03 15 6 C 0.00 -0.03 4.73 -19.88 -0.09 -0.13 15 7 C 0.07 3.38 2.48 -12.29 -0.03 3.35 15 8 H 0.02 0.94 7.87 -2.39 -0.02 0.93 15 9 C -0.13 -5.77 8.78 71.98 0.63 -5.14 15 10 C -0.53 -27.68 8.25 25.60 0.21 -27.47 15 11 H 0.05 2.82 7.61 -2.91 -0.02 2.80 15 12 C 0.02 1.03 5.30 84.66 0.45 1.48 15 13 N -0.91 -50.57 11.32 21.45 0.24 -50.33 15 14 Si 0.95 42.32 29.54 68.60 2.03 44.35 15 15 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 18 C -0.16 -5.93 8.70 22.32 0.19 -5.73 15 19 C 0.12 3.94 7.24 22.37 0.16 4.10 15 20 F -0.13 -4.19 16.48 44.97 0.74 -3.45 15 21 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.08 1.67 7.64 -2.39 -0.02 1.65 15 23 H 0.08 1.67 7.64 -2.39 -0.02 1.65 15 24 H 0.14 4.88 7.94 -2.91 -0.02 4.86 15 25 H 0.03 1.54 7.37 -2.39 -0.02 1.52 15 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15 27 H 0.06 3.28 6.07 -2.39 -0.01 3.26 15 28 H 0.26 13.89 8.31 -92.71 -0.77 13.12 15 29 H 0.13 5.24 7.56 -2.91 -0.02 5.22 15 Total: -1.00 -54.76 257.35 7.38 -47.38 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.16 Total: 3.86 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 2.47 Total: -38.60 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.24 Total: -50.33 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 1.48 Total: -6.66 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -54.76 7.38 -47.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987285.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.826 kcal (2) G-P(sol) polarization free energy of solvation -54.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds