Wall clock time and date at job start Mon Mar 30 2020 03:11:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38412 * 120.03083 * 2 1
4 4 F 1.35104 * 120.01248 * 0.03859 * 3 2 1
5 5 C 1.38471 * 119.97659 * 180.02562 * 3 2 1
6 6 C 1.38203 * 120.02865 * 0.02562 * 5 3 2
7 7 C 1.50699 * 119.97720 * 179.97438 * 6 5 3
8 8 H 1.09000 * 109.47247 * 0.02562 * 7 6 5
9 9 C 1.52997 * 109.47265 * 239.99853 * 7 6 5
10 10 C 1.50706 * 109.46817 * 119.99977 * 7 6 5
11 11 H 1.07995 * 120.00167 * 359.72198 * 10 7 6
12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6
13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7
14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7
15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10
16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10
17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10
18 18 C 1.38208 * 120.04747 * 0.23321 * 6 5 3
19 19 C 1.38427 * 120.02232 * 180.02562 * 2 1 3
20 20 F 1.35099 * 120.01150 * 359.97438 * 19 2 1
21 21 H 1.08998 * 109.46918 * 90.00195 * 1 2 3
22 22 H 1.08998 * 109.47049 * 210.00418 * 1 2 3
23 23 H 1.09003 * 109.46423 * 330.00485 * 1 2 3
24 24 H 1.08001 * 119.98496 * 180.02562 * 5 3 2
25 25 H 1.09000 * 109.47140 * 300.00252 * 9 7 6
26 26 H 1.09001 * 109.47230 * 59.99396 * 9 7 6
27 27 H 1.09001 * 109.47375 * 180.02562 * 9 7 6
28 28 H 0.96996 * 119.99730 * 179.97438 * 13 12 10
29 29 H 1.08000 * 119.98776 * 179.72683 * 18 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1997 1.1983 0.0000
4 9 1.5251 2.3689 0.0008
5 6 3.5844 1.1970 -0.0005
6 6 4.2749 -0.0002 -0.0016
7 6 5.7819 -0.0003 -0.0028
8 1 6.1453 1.0274 -0.0021
9 6 6.2909 -0.7210 -1.2527
10 6 6.2851 -0.7113 1.2271
11 1 5.5839 -1.1180 1.9405
12 6 7.6409 -0.8378 1.4438
13 7 8.4948 -0.3377 0.5777
14 14 8.2646 -1.7198 2.9678
15 1 8.4289 -3.1655 2.6708
16 1 9.5734 -1.1455 3.3712
17 1 7.2875 -1.5494 4.0731
18 6 3.5844 -1.1974 -0.0070
19 6 2.1996 -1.1985 -0.0005
20 9 1.5248 -2.3689 -0.0005
21 1 -0.3633 0.0000 -1.0277
22 1 -0.3633 -0.8899 0.5139
23 1 -0.3632 0.8901 0.5138
24 1 4.1251 2.1319 -0.0001
25 1 5.9275 -1.7486 -1.2529
26 1 5.9269 -0.2068 -2.1422
27 1 7.3810 -0.7214 -1.2533
28 1 9.4486 -0.4265 0.7305
29 1 4.1249 -2.1323 -0.0123
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259987285.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:06
Heat of formation + Delta-G solvation = -99.204528 kcal
Electronic energy + Delta-G solvation = -15239.073603 eV
Core-core repulsion = 12375.874771 eV
Total energy + Delta-G solvation = -2863.198832 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 226.086 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-49.98411 -49.97416 -40.16079 -36.44349 -34.01248 -31.72049 -31.18783 -27.52986
-27.16258 -24.02951 -23.52990 -21.60996 -18.75950 -18.48745 -17.82880 -17.06489
-16.82798 -16.53667 -16.46088 -16.27127 -15.28650 -14.76230 -14.55249 -14.09231
-13.85250 -13.55033 -13.43214 -13.13179 -12.88987 -12.71303 -12.54677 -12.36247
-12.16031 -12.02150 -11.43953 -11.02382 -10.48652 -9.68217 -9.48479 -8.11709
-6.25663 0.05144 0.12021 1.42759 1.44819 1.53908 2.38402 2.52134
2.89161 3.16845 3.45103 3.67031 3.74577 3.99387 4.34409 4.58464
4.68844 4.74628 4.82042 4.92812 4.95126 5.09343 5.13510 5.21657
5.24689 5.38674 5.61819 5.87837 5.93130 6.04370 6.29655 6.81820
7.42660 8.92897
Molecular weight = 226.09amu
Principal moments of inertia in cm(-1)
A = 0.033561 B = 0.007730 C = 0.007180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 834.101139 B = 3621.190094 C = 3898.878594
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C -0.175 4.175
3 C 0.121 3.879
4 F -0.132 7.132
5 C -0.171 4.171
6 C -0.001 4.001
7 C 0.070 3.930
8 H 0.018 0.982
9 C -0.125 4.125
10 C -0.526 4.526
11 H 0.054 0.946
12 C 0.019 3.981
13 N -0.913 5.913
14 Si 0.953 3.047
15 H -0.275 1.275
16 H -0.283 1.283
17 H -0.271 1.271
18 C -0.156 4.156
19 C 0.118 3.882
20 F -0.133 7.133
21 H 0.087 0.913
22 H 0.079 0.921
23 H 0.081 0.919
24 H 0.141 0.859
25 H 0.034 0.966
26 H 0.029 0.971
27 H 0.063 0.937
28 H 0.263 0.737
29 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.126 0.364 -1.620 12.239
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.176 4.176
3 C 0.102 3.898
4 F -0.110 7.110
5 C -0.190 4.190
6 C -0.001 4.001
7 C 0.052 3.948
8 H 0.036 0.964
9 C -0.183 4.183
10 C -0.564 4.564
11 H 0.072 0.928
12 C -0.180 4.180
13 N -0.552 5.552
14 Si 0.778 3.222
15 H -0.200 1.200
16 H -0.209 1.209
17 H -0.196 1.196
18 C -0.174 4.174
19 C 0.098 3.902
20 F -0.112 7.112
21 H 0.106 0.894
22 H 0.098 0.902
23 H 0.099 0.901
24 H 0.159 0.841
25 H 0.053 0.947
26 H 0.048 0.952
27 H 0.082 0.918
28 H 0.072 0.928
29 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -11.998 0.386 -1.650 12.117
hybrid contribution 0.640 -0.369 0.736 1.043
sum -11.358 0.017 -0.914 11.394
Atomic orbital electron populations
1.20665 0.87264 1.04220 1.03965 1.19905 0.99073 0.90264 1.08389
1.17069 0.89236 0.80703 1.02815 1.91467 1.80208 1.45464 1.93892
1.21241 0.92218 0.99884 1.05685 1.20069 0.97586 0.91242 0.91221
1.17827 0.85382 0.96598 0.95001 0.96366 1.21664 1.02851 0.98277
0.95484 1.21340 0.91852 1.36744 1.06425 0.92819 1.25646 0.97093
0.96144 0.99122 1.69988 1.02372 1.46167 1.36702 0.85635 0.77628
0.78842 0.80054 1.20027 1.20910 1.19579 1.21088 0.91807 1.00189
1.04366 1.17149 0.89281 0.80775 1.02952 1.91460 1.80190 1.45621
1.93905 0.89444 0.90195 0.90054 0.84104 0.94667 0.95176 0.91797
0.92771 0.84727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.37 9.66 71.24 0.69 -1.68 15
2 C -0.17 -5.31 5.89 -19.78 -0.12 -5.43 15
3 C 0.12 3.93 7.24 22.37 0.16 4.09 15
4 F -0.13 -3.96 16.48 44.97 0.74 -3.21 15
5 C -0.17 -6.25 9.65 22.32 0.22 -6.03 15
6 C 0.00 -0.03 4.73 -19.88 -0.09 -0.13 15
7 C 0.07 3.38 2.48 -12.29 -0.03 3.35 15
8 H 0.02 0.94 7.87 -2.39 -0.02 0.93 15
9 C -0.13 -5.77 8.78 71.98 0.63 -5.14 15
10 C -0.53 -27.68 8.25 25.60 0.21 -27.47 15
11 H 0.05 2.82 7.61 -2.91 -0.02 2.80 15
12 C 0.02 1.03 5.30 84.66 0.45 1.48 15
13 N -0.91 -50.57 11.32 21.45 0.24 -50.33 15
14 Si 0.95 42.32 29.54 68.60 2.03 44.35 15
15 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15
16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15
17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15
18 C -0.16 -5.93 8.70 22.32 0.19 -5.73 15
19 C 0.12 3.94 7.24 22.37 0.16 4.10 15
20 F -0.13 -4.19 16.48 44.97 0.74 -3.45 15
21 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15
22 H 0.08 1.67 7.64 -2.39 -0.02 1.65 15
23 H 0.08 1.67 7.64 -2.39 -0.02 1.65 15
24 H 0.14 4.88 7.94 -2.91 -0.02 4.86 15
25 H 0.03 1.54 7.37 -2.39 -0.02 1.52 15
26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15
27 H 0.06 3.28 6.07 -2.39 -0.01 3.26 15
28 H 0.26 13.89 8.31 -92.71 -0.77 13.12 15
29 H 0.13 5.24 7.56 -2.91 -0.02 5.22 15
Total: -1.00 -54.76 257.35 7.38 -47.38
By element:
Atomic # 1 Polarization: 2.71 SS G_CDS: 1.16 Total: 3.86 kcal
Atomic # 6 Polarization: -41.07 SS G_CDS: 2.47 Total: -38.60 kcal
Atomic # 7 Polarization: -50.57 SS G_CDS: 0.24 Total: -50.33 kcal
Atomic # 9 Polarization: -8.15 SS G_CDS: 1.48 Total: -6.66 kcal
Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal
Total: -54.76 7.38 -47.38 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259987285.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.826 kcal
(2) G-P(sol) polarization free energy of solvation -54.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds