Wall clock time and date at job start Mon Mar 30 2020 03:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99650 * 2 1 4 4 H 1.48498 * 109.47678 * 269.99882 * 3 2 1 5 5 H 1.48498 * 109.47486 * 30.00363 * 3 2 1 6 6 H 1.48504 * 109.46833 * 149.99853 * 3 2 1 7 7 C 1.37875 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99842 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47338 * 179.97438 * 9 7 2 11 11 C 1.38260 * 120.00075 * 265.02639 * 10 9 7 12 12 C 1.38211 * 120.00008 * 179.97438 * 11 10 9 13 13 C 1.38258 * 120.00175 * 359.79887 * 12 11 10 14 14 C 1.38211 * 119.99774 * 0.43545 * 13 12 11 15 15 C 1.38215 * 120.00244 * 84.99485 * 10 9 7 16 16 C 1.50702 * 119.99534 * 0.02562 * 15 10 9 17 17 C 1.52993 * 109.47549 * 84.97759 * 16 15 10 18 18 F 1.39898 * 109.47494 * 64.99327 * 17 16 15 19 19 F 1.39894 * 109.47379 * 184.99633 * 17 16 15 20 20 H 0.96999 * 120.00190 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47611 * 59.99567 * 9 7 2 22 22 H 1.09002 * 109.47197 * 299.99718 * 9 7 2 23 23 H 1.08001 * 119.99600 * 359.97438 * 11 10 9 24 24 H 1.08003 * 119.99444 * 180.02562 * 12 11 10 25 25 H 1.07998 * 119.99848 * 180.23501 * 13 12 11 26 26 H 1.08002 * 120.00200 * 179.80765 * 14 13 12 27 27 H 1.09003 * 109.46585 * 204.97857 * 16 15 10 28 28 H 1.08998 * 109.47220 * 324.97271 * 16 15 10 29 29 H 1.09000 * 109.46898 * 304.99588 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0139 -2.6148 -0.0001 11 6 4.3418 -3.2322 1.1928 12 6 4.8021 -4.5354 1.1927 13 6 4.9307 -5.2231 0.0002 14 6 4.6076 -4.6042 -1.1927 15 6 4.1464 -3.3009 -1.1926 16 6 3.7888 -2.6279 -2.4927 17 6 4.9863 -1.8185 -2.9943 18 9 6.0391 -2.6862 -3.3039 19 9 4.6192 -1.1035 -4.1393 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6807 0.8904 22 1 3.8752 -0.6796 -0.8895 23 1 4.2382 -2.6960 2.1246 24 1 5.0578 -5.0177 2.1246 25 1 5.2868 -6.2426 0.0005 26 1 4.7110 -5.1403 -2.1245 27 1 3.5256 -3.3838 -3.2326 28 1 2.9402 -1.9621 -2.3359 29 1 5.3052 -1.1227 -2.2182 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260021224.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:59 Heat of formation + Delta-G solvation = -98.260472 kcal Electronic energy + Delta-G solvation = -15421.371274 eV Core-core repulsion = 12558.213380 eV Total energy + Delta-G solvation = -2863.157894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.59971 -46.59874 -39.03923 -33.87727 -32.78081 -31.40561 -28.52805 -27.43877 -23.57498 -22.79328 -21.23990 -19.89156 -17.26335 -16.98850 -16.82772 -16.09722 -15.47661 -14.86328 -14.47218 -14.13671 -13.55707 -13.01091 -12.94327 -12.74968 -12.50639 -12.30629 -12.10986 -11.88970 -11.57652 -11.12419 -10.82440 -10.62038 -10.35822 -10.11495 -9.98858 -9.46526 -8.67576 -8.31291 -7.93038 -6.16695 -4.17284 1.80183 1.97223 3.21943 3.30789 3.31439 4.09287 4.32709 4.37920 4.75521 4.90575 5.02766 5.14586 5.36330 5.44372 5.51728 5.65831 5.84628 5.98653 6.14095 6.33300 6.51476 6.55938 6.78060 6.87478 6.95114 7.03243 7.43123 7.49485 7.60934 8.39231 8.88698 9.42868 10.95771 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.011457 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.616293 B = 2443.432260 C = 3339.883775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.871 3.129 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.075 0.925 9 C 0.012 3.988 10 C -0.023 4.023 11 C -0.124 4.124 12 C -0.118 4.118 13 C -0.146 4.146 14 C -0.105 4.105 15 C -0.096 4.096 16 C -0.129 4.129 17 C 0.263 3.737 18 F -0.211 7.211 19 F -0.209 7.209 20 H 0.266 0.734 21 H 0.030 0.970 22 H 0.020 0.980 23 H 0.120 0.880 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.128 -5.366 -2.166 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.698 3.302 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.025 4.025 10 C -0.023 4.023 11 C -0.142 4.142 12 C -0.136 4.136 13 C -0.164 4.164 14 C -0.123 4.123 15 C -0.096 4.096 16 C -0.167 4.167 17 C 0.209 3.791 18 F -0.192 7.192 19 F -0.191 7.191 20 H 0.076 0.924 21 H 0.048 0.952 22 H 0.038 0.962 23 H 0.138 0.862 24 H 0.132 0.868 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.104 0.896 28 H 0.145 0.855 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.975 -5.244 -2.204 11.483 hybrid contribution 0.294 0.822 -0.051 0.875 sum 10.269 -4.422 -2.255 11.406 Atomic orbital electron populations 1.69886 1.06248 1.27132 1.49984 1.24986 0.94710 0.98937 0.94318 0.86905 0.80532 0.83901 0.78898 1.19868 1.21060 1.18875 1.20847 0.87916 0.94707 1.51884 0.90642 1.18884 0.97823 0.88550 0.97272 1.20171 0.92628 0.97835 0.91713 1.21048 1.00158 0.94979 0.97971 1.21068 1.00070 0.94909 0.97556 1.20896 1.03281 0.99512 0.92713 1.20936 0.99107 0.94473 0.97777 1.19284 1.02012 0.94491 0.93787 1.21633 0.98141 1.01262 0.95653 1.22042 0.85568 0.87187 0.84257 1.92941 1.59967 1.72017 1.94283 1.92957 1.92183 1.79216 1.54711 0.92444 0.95199 0.96173 0.86212 0.86837 0.86889 0.86752 0.89615 0.85461 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.68 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 15 3 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.26 -5.91 6.54 56.52 0.37 -5.54 15 7 C -0.52 -13.78 8.85 -34.44 -0.30 -14.08 15 8 H 0.08 2.23 7.98 -52.49 -0.42 1.81 15 9 C 0.01 0.26 3.50 -29.04 -0.10 0.16 15 10 C -0.02 -0.47 5.07 -104.62 -0.53 -1.00 15 11 C -0.12 -2.24 9.68 -39.58 -0.38 -2.62 15 12 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 15 13 C -0.15 -2.20 10.05 -39.58 -0.40 -2.60 15 14 C -0.10 -1.70 9.68 -39.58 -0.38 -2.08 15 15 C -0.10 -1.74 4.98 -104.62 -0.52 -2.26 15 16 C -0.13 -2.24 4.89 -27.89 -0.14 -2.37 15 17 C 0.26 4.29 5.05 37.15 0.19 4.48 15 18 F -0.21 -3.44 17.16 2.25 0.04 -3.40 15 19 F -0.21 -3.60 17.34 2.25 0.04 -3.56 15 20 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 21 H 0.03 0.67 7.11 -51.93 -0.37 0.30 15 22 H 0.02 0.43 5.11 -51.93 -0.27 0.16 15 23 H 0.12 2.06 8.06 -52.49 -0.42 1.63 15 24 H 0.11 1.45 8.06 -52.48 -0.42 1.03 15 25 H 0.11 1.38 8.06 -52.49 -0.42 0.96 15 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.09 1.33 8.05 -51.93 -0.42 0.91 15 28 H 0.13 2.50 6.42 -51.93 -0.33 2.17 15 29 H 0.11 1.69 6.92 -51.93 -0.36 1.33 15 LS Contribution 256.07 15.07 3.86 3.86 Total: -1.00 -28.86 256.07 -6.05 -34.91 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -3.02 Total: 0.77 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.07 Total: -22.70 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.77 Total: -25.68 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.08 Total: -6.96 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.86 -6.05 -34.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021224.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.352 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds