Wall clock time and date at job start Mon Mar 30 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99650 * 2 1 4 4 H 1.48498 * 109.47678 * 269.99882 * 3 2 1 5 5 H 1.48498 * 109.47486 * 30.00363 * 3 2 1 6 6 H 1.48504 * 109.46833 * 149.99853 * 3 2 1 7 7 C 1.37875 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99842 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47338 * 179.97438 * 9 7 2 11 11 C 1.38260 * 120.00075 * 265.02639 * 10 9 7 12 12 C 1.38211 * 120.00008 * 179.97438 * 11 10 9 13 13 C 1.38258 * 120.00175 * 359.79887 * 12 11 10 14 14 C 1.38211 * 119.99774 * 0.43545 * 13 12 11 15 15 C 1.38215 * 120.00244 * 84.99485 * 10 9 7 16 16 C 1.50702 * 119.99534 * 0.02562 * 15 10 9 17 17 C 1.52993 * 109.47549 * 84.97759 * 16 15 10 18 18 F 1.39898 * 109.47494 * 64.99327 * 17 16 15 19 19 F 1.39894 * 109.47379 * 184.99633 * 17 16 15 20 20 H 0.96999 * 120.00190 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47611 * 59.99567 * 9 7 2 22 22 H 1.09002 * 109.47197 * 299.99718 * 9 7 2 23 23 H 1.08001 * 119.99600 * 359.97438 * 11 10 9 24 24 H 1.08003 * 119.99444 * 180.02562 * 12 11 10 25 25 H 1.07998 * 119.99848 * 180.23501 * 13 12 11 26 26 H 1.08002 * 120.00200 * 179.80765 * 14 13 12 27 27 H 1.09003 * 109.46585 * 204.97857 * 16 15 10 28 28 H 1.08998 * 109.47220 * 324.97271 * 16 15 10 29 29 H 1.09000 * 109.46898 * 304.99588 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0139 -2.6148 -0.0001 11 6 4.3418 -3.2322 1.1928 12 6 4.8021 -4.5354 1.1927 13 6 4.9307 -5.2231 0.0002 14 6 4.6076 -4.6042 -1.1927 15 6 4.1464 -3.3009 -1.1926 16 6 3.7888 -2.6279 -2.4927 17 6 4.9863 -1.8185 -2.9943 18 9 6.0391 -2.6862 -3.3039 19 9 4.6192 -1.1035 -4.1393 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6807 0.8904 22 1 3.8752 -0.6796 -0.8895 23 1 4.2382 -2.6960 2.1246 24 1 5.0578 -5.0177 2.1246 25 1 5.2868 -6.2426 0.0005 26 1 4.7110 -5.1403 -2.1245 27 1 3.5256 -3.3838 -3.2326 28 1 2.9402 -1.9621 -2.3359 29 1 5.3052 -1.1227 -2.2182 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260021224.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:58 Heat of formation + Delta-G solvation = -113.555180 kcal Electronic energy + Delta-G solvation = -15422.034503 eV Core-core repulsion = 12558.213380 eV Total energy + Delta-G solvation = -2863.821122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.92312 -47.92094 -40.38328 -35.56313 -34.37235 -33.07492 -29.96009 -29.02162 -25.15881 -24.29907 -22.65908 -21.31137 -19.01415 -18.50365 -18.27851 -17.42773 -16.86231 -16.24958 -16.20062 -15.64572 -14.88381 -14.74287 -14.33510 -14.16571 -13.88846 -13.81315 -13.64945 -13.44532 -13.01825 -12.75017 -12.48637 -12.01898 -11.92260 -11.71065 -11.65047 -11.38711 -10.78164 -9.61602 -9.33943 -8.29395 -6.34061 0.49779 0.63878 1.36434 1.38001 1.48086 2.34403 2.77508 3.02767 3.08520 3.44413 3.56206 3.70907 4.10909 4.19346 4.26916 4.33784 4.52761 4.66063 4.80829 4.95707 5.01711 5.05715 5.26365 5.33808 5.56853 5.66968 5.70682 5.96875 6.19315 6.30896 6.72806 7.29360 8.86797 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.011457 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.616293 B = 2443.432260 C = 3339.883775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.511 4.511 8 H 0.030 0.970 9 C 0.018 3.982 10 C -0.058 4.058 11 C -0.140 4.140 12 C -0.115 4.115 13 C -0.137 4.137 14 C -0.110 4.110 15 C -0.108 4.108 16 C -0.127 4.127 17 C 0.269 3.731 18 F -0.207 7.207 19 F -0.215 7.215 20 H 0.267 0.733 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.120 0.880 24 H 0.146 0.854 25 H 0.150 0.850 26 H 0.137 0.863 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.400 -6.126 -2.135 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.185 4.185 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.549 4.549 8 H 0.048 0.952 9 C -0.019 4.019 10 C -0.058 4.058 11 C -0.158 4.158 12 C -0.133 4.133 13 C -0.155 4.155 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.164 4.164 17 C 0.216 3.784 18 F -0.189 7.189 19 F -0.196 7.196 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.138 0.862 24 H 0.164 0.836 25 H 0.168 0.832 26 H 0.155 0.845 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.271 -6.019 -2.172 13.839 hybrid contribution -0.425 0.887 -0.055 0.985 sum 11.846 -5.132 -2.227 13.100 Atomic orbital electron populations 1.70045 1.08253 1.28160 1.52220 1.25890 0.95458 1.03015 0.94118 0.85854 0.79868 0.78805 0.79508 1.18880 1.21092 1.16594 1.21028 0.90473 0.92829 1.50559 0.95198 1.18724 0.94581 0.91018 0.97553 1.20078 0.95294 0.97030 0.93369 1.21225 1.00793 0.96411 0.97378 1.21429 0.98686 0.93787 0.99394 1.21370 1.01296 1.00939 0.91855 1.21255 0.98415 0.93629 0.99481 1.19417 1.02521 0.95548 0.93290 1.21538 0.97541 1.01212 0.96138 1.21980 0.85180 0.87136 0.84147 1.92943 1.59688 1.71987 1.94264 1.92947 1.92265 1.79328 1.55078 0.92429 0.95099 0.95080 0.86194 0.83611 0.83189 0.84510 0.88113 0.88490 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.96 13.96 21.45 0.30 -57.66 15 2 C 0.01 0.71 5.47 84.65 0.46 1.18 15 3 Si 0.94 42.28 27.47 68.60 1.88 44.16 15 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 15 6 H -0.24 -10.02 6.54 99.48 0.65 -9.37 15 7 C -0.51 -28.18 8.85 25.60 0.23 -27.95 15 8 H 0.03 1.86 7.98 -2.91 -0.02 1.84 15 9 C 0.02 0.82 3.50 29.10 0.10 0.92 15 10 C -0.06 -2.27 5.07 -19.86 -0.10 -2.37 15 11 C -0.14 -4.90 9.68 22.27 0.22 -4.69 15 12 C -0.12 -3.24 10.05 22.27 0.22 -3.02 15 13 C -0.14 -3.60 10.05 22.27 0.22 -3.38 15 14 C -0.11 -3.25 9.68 22.27 0.22 -3.04 15 15 C -0.11 -3.80 4.98 -19.86 -0.10 -3.90 15 16 C -0.13 -4.31 4.89 29.85 0.15 -4.16 15 17 C 0.27 8.40 5.05 71.98 0.36 8.76 15 18 F -0.21 -6.32 17.16 44.97 0.77 -5.55 15 19 F -0.21 -7.13 17.34 44.97 0.78 -6.35 15 20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 21 H 0.03 1.35 7.11 -2.39 -0.02 1.34 15 22 H 0.03 1.30 5.11 -2.39 -0.01 1.29 15 23 H 0.12 4.05 8.06 -2.91 -0.02 4.02 15 24 H 0.15 3.12 8.06 -2.91 -0.02 3.09 15 25 H 0.15 2.85 8.06 -2.91 -0.02 2.83 15 26 H 0.14 3.38 8.06 -2.91 -0.02 3.36 15 27 H 0.10 3.03 8.05 -2.39 -0.02 3.01 15 28 H 0.10 3.91 6.42 -2.39 -0.02 3.90 15 29 H 0.12 3.50 6.92 -2.39 -0.02 3.49 15 Total: -1.00 -63.40 256.07 6.81 -56.59 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.10 Total: 10.46 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 1.98 Total: -41.65 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.30 Total: -57.66 kcal Atomic # 9 Polarization: -13.45 SS G_CDS: 1.55 Total: -11.90 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.16 kcal Total: -63.40 6.81 -56.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021224.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.964 kcal (2) G-P(sol) polarization free energy of solvation -63.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds