Wall clock time and date at job start Mon Mar 30 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48504 * 109.47106 * 267.07947 * 3 2 1 5 5 H 1.48497 * 109.47390 * 27.07521 * 3 2 1 6 6 H 1.48503 * 109.47165 * 147.08060 * 3 2 1 7 7 C 1.37870 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00583 * 356.55620 * 7 2 1 9 9 C 1.50703 * 120.00067 * 176.55642 * 7 2 1 10 10 H 1.08996 * 109.46732 * 334.96741 * 9 7 2 11 11 C 1.53008 * 109.46863 * 214.97332 * 9 7 2 12 12 C 1.50704 * 109.46581 * 174.99681 * 11 9 7 13 13 C 1.38232 * 119.99888 * 90.00429 * 12 11 9 14 14 C 1.38238 * 120.00072 * 179.97438 * 13 12 11 15 15 C 1.38239 * 119.99646 * 359.97438 * 14 13 12 16 16 C 1.38232 * 120.00113 * 0.25831 * 15 14 13 17 17 C 1.38235 * 119.99836 * 269.97302 * 12 11 9 18 18 C 1.52988 * 109.47374 * 94.97210 * 9 7 2 19 19 F 1.39898 * 109.47687 * 66.61412 * 18 9 7 20 20 F 1.39901 * 109.47378 * 186.61167 * 18 9 7 21 21 H 0.96999 * 119.99653 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47043 * 55.00258 * 11 9 7 23 23 H 1.08994 * 109.47241 * 294.99672 * 11 9 7 24 24 H 1.08004 * 120.00194 * 359.96789 * 13 12 11 25 25 H 1.08001 * 120.00244 * 179.97438 * 14 13 12 26 26 H 1.08006 * 119.99756 * 179.97438 * 15 14 13 27 27 H 1.08000 * 119.99722 * 179.72598 * 16 15 14 28 28 H 1.07996 * 120.00551 * 0.02562 * 17 12 11 29 29 H 1.09004 * 109.47519 * 306.61231 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5584 2.0108 -1.3983 5 1 1.4171 2.6697 0.6372 6 1 3.5145 1.4588 0.7609 7 6 2.0045 -1.1940 0.0005 8 1 1.4661 -2.1285 0.0571 9 6 3.5095 -1.1952 -0.0779 10 1 3.8489 -0.2781 -0.5592 11 6 3.9767 -2.4024 -0.8937 12 6 5.4712 -2.3372 -1.0763 13 6 6.3072 -2.9318 -0.1499 14 6 7.6781 -2.8725 -0.3177 15 6 8.2128 -2.2189 -1.4122 16 6 7.3769 -1.6202 -2.3360 17 6 6.0059 -1.6833 -2.1706 18 6 4.0937 -1.2768 1.3337 19 9 3.7834 -2.5198 1.8958 20 9 5.4833 -1.1265 1.2728 21 1 -0.4849 0.8401 -0.0004 22 1 3.4907 -2.3916 -1.8693 23 1 3.7146 -3.3201 -0.3673 24 1 5.8895 -3.4427 0.7050 25 1 8.3314 -3.3367 0.4064 26 1 9.2839 -2.1722 -1.5430 27 1 7.7948 -1.1058 -3.1887 28 1 5.3527 -1.2188 -2.8944 29 1 3.6691 -0.4836 1.9492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260052839.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:56 Heat of formation + Delta-G solvation = -106.837423 kcal Electronic energy + Delta-G solvation = -15802.518773 eV Core-core repulsion = 12938.988954 eV Total energy + Delta-G solvation = -2863.529819 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.69436 -47.61823 -40.03931 -36.47224 -34.16819 -31.66645 -31.55936 -27.15250 -26.55825 -23.37231 -22.80571 -21.25985 -19.33875 -18.29372 -17.68489 -17.45656 -17.10121 -16.27096 -15.85614 -15.60434 -14.85197 -14.73392 -14.23714 -14.12036 -14.01568 -13.76754 -13.60399 -13.35500 -12.92984 -12.79049 -12.26641 -11.96193 -11.78942 -11.68259 -11.46214 -11.28526 -10.79898 -9.67054 -9.38665 -8.39503 -6.49383 0.57655 0.63291 1.31233 1.33966 1.42175 2.25112 2.82890 3.01539 3.29537 3.83630 3.90130 3.98946 4.12975 4.20523 4.27227 4.37148 4.57176 4.72202 4.75939 4.83687 5.08141 5.15584 5.30374 5.34359 5.45068 5.69219 5.71013 5.89982 6.18316 6.25380 6.61569 7.17994 8.76300 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.010008 C = 0.009155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.134474 B = 2797.094611 C = 3057.805181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.929 3.071 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.523 4.523 8 H 0.042 0.958 9 C -0.013 4.013 10 H 0.061 0.939 11 C -0.066 4.066 12 C -0.094 4.094 13 C -0.110 4.110 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.126 4.126 17 C -0.133 4.133 18 C 0.252 3.748 19 F -0.216 7.216 20 F -0.214 7.214 21 H 0.272 0.728 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.137 0.863 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.123 0.877 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.908 -0.942 -2.030 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.752 3.248 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.171 1.171 7 C -0.560 4.560 8 H 0.060 0.940 9 C -0.033 4.033 10 H 0.080 0.920 11 C -0.103 4.103 12 C -0.094 4.094 13 C -0.128 4.128 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.144 4.144 17 C -0.151 4.151 18 C 0.198 3.802 19 F -0.197 7.197 20 F -0.195 7.195 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.125 0.875 25 H 0.155 0.845 26 H 0.165 0.835 27 H 0.162 0.838 28 H 0.141 0.859 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.751 -0.861 -2.015 14.913 hybrid contribution -0.448 0.532 0.295 0.756 sum 14.302 -0.329 -1.719 14.409 Atomic orbital electron populations 1.70011 1.08170 1.28661 1.50124 1.25913 0.95468 1.02690 0.93213 0.86012 0.79505 0.79100 0.80173 1.18363 1.20489 1.17101 1.20892 0.89471 0.93799 1.51879 0.94008 1.20025 0.95390 0.97615 0.90247 0.92044 1.20518 0.90899 0.98141 1.00766 1.20100 0.95401 0.98189 0.95692 1.21095 0.94425 0.99411 0.97883 1.21339 0.94404 1.00193 0.98799 1.21416 1.00831 0.98013 0.94421 1.21385 0.92782 0.99978 1.00271 1.21230 0.96342 0.99818 0.97725 1.22816 0.75411 0.82750 0.99271 1.92834 1.92899 1.46910 1.87070 1.92922 1.33386 1.95699 1.97524 0.91871 0.90828 0.92181 0.87549 0.84467 0.83489 0.83803 0.85902 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.96 21.45 0.30 -54.82 15 2 C 0.03 1.49 5.47 84.65 0.46 1.96 15 3 Si 0.93 40.81 26.46 68.60 1.82 42.62 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 15 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 6 H -0.25 -10.06 6.51 99.48 0.65 -9.41 15 7 C -0.52 -28.31 8.73 25.60 0.22 -28.09 15 8 H 0.04 2.55 8.06 -2.91 -0.02 2.52 15 9 C -0.01 -0.59 1.60 -11.54 -0.02 -0.61 15 10 H 0.06 2.71 5.65 -2.39 -0.01 2.70 15 11 C -0.07 -2.67 4.72 29.85 0.14 -2.53 15 12 C -0.09 -3.35 4.33 -19.87 -0.09 -3.43 15 13 C -0.11 -3.68 6.87 22.27 0.15 -3.53 15 14 C -0.13 -3.56 10.05 22.27 0.22 -3.33 15 15 C -0.13 -3.14 10.05 22.27 0.22 -2.91 15 16 C -0.13 -3.26 10.05 22.27 0.22 -3.04 15 17 C -0.13 -4.19 9.70 22.27 0.22 -3.97 15 18 C 0.25 10.69 4.37 71.98 0.31 11.01 15 19 F -0.22 -9.48 16.00 44.97 0.72 -8.76 15 20 F -0.21 -8.51 13.38 44.97 0.60 -7.91 15 21 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15 22 H 0.07 2.96 8.08 -2.39 -0.02 2.94 15 23 H 0.06 2.51 7.43 -2.39 -0.02 2.50 15 24 H 0.11 3.70 7.58 -2.91 -0.02 3.68 15 25 H 0.14 3.03 8.06 -2.91 -0.02 3.01 15 26 H 0.15 2.55 8.06 -2.91 -0.02 2.52 15 27 H 0.14 2.81 8.06 -2.91 -0.02 2.78 15 28 H 0.12 3.64 8.06 -2.91 -0.02 3.62 15 29 H 0.10 4.00 7.38 -2.38 -0.02 3.98 15 Total: -1.00 -60.48 251.18 6.60 -53.89 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.08 Total: 13.47 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 2.08 Total: -38.49 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.30 Total: -54.82 kcal Atomic # 9 Polarization: -17.99 SS G_CDS: 1.32 Total: -16.67 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.82 Total: 42.62 kcal Total: -60.48 6.60 -53.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052839.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.949 kcal (2) G-P(sol) polarization free energy of solvation -60.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds