Wall clock time and date at job start Mon Mar 30 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86811 * 120.00024 * 2 1 4 4 H 1.48507 * 109.46834 * 270.00167 * 3 2 1 5 5 H 1.48499 * 109.46790 * 29.99788 * 3 2 1 6 6 H 1.48497 * 109.47119 * 150.00100 * 3 2 1 7 7 C 1.37873 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99946 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00591 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47529 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47549 * 179.97438 * 10 9 7 12 12 C 1.38256 * 120.00325 * 265.00746 * 11 10 9 13 13 C 1.38211 * 120.00062 * 180.25725 * 12 11 10 14 14 C 1.38258 * 119.99774 * 359.52161 * 13 12 11 15 15 C 1.38211 * 120.00175 * 0.43545 * 14 13 12 16 16 C 1.38215 * 119.99534 * 84.97759 * 11 10 9 17 17 C 1.50700 * 120.00244 * 0.02562 * 16 11 10 18 18 F 1.39906 * 109.46658 * 299.99716 * 17 16 11 19 19 F 1.39895 * 109.47368 * 59.99262 * 17 16 11 20 20 H 0.97005 * 119.99638 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46823 * 60.00239 * 9 7 2 22 22 H 1.08998 * 109.47070 * 300.00308 * 9 7 2 23 23 H 1.09003 * 109.47257 * 60.00118 * 10 9 7 24 24 H 1.08998 * 109.47259 * 300.00269 * 10 9 7 25 25 H 1.08002 * 119.99676 * 359.97122 * 12 11 10 26 26 H 1.07998 * 120.00348 * 179.72205 * 13 12 11 27 27 H 1.08003 * 120.00342 * 180.21025 * 14 13 12 28 28 H 1.08001 * 120.00392 * 179.78930 * 15 14 13 29 29 H 1.08998 * 109.47065 * 179.97438 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5286 -2.6365 0.0001 12 6 6.2190 -2.7422 -1.1930 13 6 7.6011 -2.7476 -1.1936 14 6 8.2932 -2.6373 -0.0019 15 6 7.6031 -2.5307 1.1908 16 6 6.2205 -2.5302 1.1919 17 6 5.4680 -2.4148 2.4925 18 9 4.6633 -1.2707 2.4657 19 9 4.6641 -3.5462 2.6681 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8745 -0.6807 -0.8905 23 1 3.6579 -3.1513 -0.8879 24 1 3.6586 -3.1493 0.8920 25 1 5.6782 -2.8252 -2.1242 26 1 8.1404 -2.8347 -2.1252 27 1 9.3733 -2.6381 -0.0026 28 1 8.1438 -2.4480 2.1221 29 1 6.1770 -2.3417 3.3171 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260279578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:48 Heat of formation + Delta-G solvation = -85.764620 kcal Electronic energy + Delta-G solvation = -15559.035275 eV Core-core repulsion = 12696.419242 eV Total energy + Delta-G solvation = -2862.616033 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.63988 -46.56277 -39.21044 -34.17524 -32.18112 -31.75575 -29.46165 -26.11723 -24.86712 -22.22411 -21.49013 -19.89770 -17.30787 -17.13934 -16.78579 -16.57525 -15.46380 -14.69767 -14.28981 -14.12452 -13.59072 -13.22668 -12.97508 -12.84365 -12.70641 -12.43077 -12.25903 -11.69003 -11.41439 -11.04394 -10.92421 -10.42760 -10.12128 -9.72273 -9.60715 -9.04719 -8.91389 -8.43203 -8.40358 -5.96063 -3.92285 1.28376 1.51670 3.36885 3.43926 3.51326 3.79480 4.03253 4.39587 4.53827 4.79807 5.03714 5.09515 5.18562 5.36777 5.41486 5.51068 5.67771 5.90640 6.07106 6.22444 6.43321 6.50691 6.56270 6.81085 6.85637 7.09461 7.39692 7.58742 7.88746 8.61906 9.08864 9.67077 11.17609 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.030089 B = 0.009304 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.343267 B = 3008.673544 C = 3304.712974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.071 0.929 9 C -0.021 4.021 10 C -0.089 4.089 11 C -0.020 4.020 12 C -0.126 4.126 13 C -0.099 4.099 14 C -0.144 4.144 15 C -0.087 4.087 16 C -0.177 4.177 17 C 0.313 3.687 18 F -0.180 7.180 19 F -0.198 7.198 20 H 0.262 0.738 21 H 0.046 0.954 22 H 0.007 0.993 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.074 -5.051 2.267 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.089 0.911 9 C -0.058 4.058 10 C -0.126 4.126 11 C -0.020 4.020 12 C -0.144 4.144 13 C -0.117 4.117 14 C -0.162 4.162 15 C -0.105 4.105 16 C -0.178 4.178 17 C 0.260 3.740 18 F -0.161 7.161 19 F -0.179 7.179 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.025 0.975 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.869 -4.931 2.282 17.722 hybrid contribution 0.256 0.938 -0.123 0.980 sum 17.125 -3.993 2.159 17.716 Atomic orbital electron populations 1.69918 1.06250 1.26715 1.51699 1.24965 0.94661 0.99002 0.94698 0.86833 0.80700 0.83805 0.78406 1.20455 1.21415 1.18707 1.21100 0.89335 0.94411 1.50280 0.91119 1.19895 0.97217 0.90893 0.97769 1.20920 0.87054 1.01450 1.03165 1.20326 0.98032 0.91817 0.91800 1.21165 0.94032 1.01264 0.97963 1.21237 0.94375 0.98096 0.98022 1.20970 0.99598 1.03212 0.92399 1.20844 0.92503 0.98577 0.98583 1.20308 0.94450 1.08278 0.94722 1.20265 0.84980 0.72396 0.96388 1.93044 1.75697 1.50235 1.97122 1.92967 1.76402 1.52309 1.96247 0.92862 0.93638 0.97519 0.91464 0.90368 0.85424 0.85997 0.85968 0.85829 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.83 13.96 55.43 0.77 -28.05 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 15 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 15 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 15 6 H -0.26 -6.64 6.54 56.52 0.37 -6.27 15 7 C -0.51 -15.23 9.66 -34.45 -0.33 -15.56 15 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 15 9 C -0.02 -0.52 3.81 -27.89 -0.11 -0.63 15 10 C -0.09 -1.88 4.62 -27.89 -0.13 -2.01 15 11 C -0.02 -0.35 5.10 -104.62 -0.53 -0.88 15 12 C -0.13 -1.94 9.68 -39.58 -0.38 -2.32 15 13 C -0.10 -1.25 10.05 -39.58 -0.40 -1.65 15 14 C -0.14 -1.69 10.05 -39.58 -0.40 -2.08 15 15 C -0.09 -1.09 9.67 -39.58 -0.38 -1.48 15 16 C -0.18 -2.81 5.37 -104.62 -0.56 -3.37 15 17 C 0.31 4.94 4.97 36.01 0.18 5.12 15 18 F -0.18 -3.58 13.61 2.25 0.03 -3.55 15 19 F -0.20 -3.46 15.35 2.25 0.03 -3.42 15 20 H 0.26 7.79 8.31 -40.82 -0.34 7.45 15 21 H 0.05 1.17 4.06 -51.93 -0.21 0.96 15 22 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 15 23 H 0.07 1.38 8.05 -51.93 -0.42 0.96 15 24 H 0.08 1.71 5.75 -51.93 -0.30 1.42 15 25 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.12 1.19 8.06 -52.49 -0.42 0.76 15 27 H 0.12 1.06 8.06 -52.48 -0.42 0.64 15 28 H 0.12 1.14 7.95 -52.49 -0.42 0.73 15 29 H 0.11 1.17 7.88 -51.93 -0.41 0.76 15 LS Contribution 251.32 15.07 3.79 3.79 Total: -1.00 -33.15 251.32 -6.19 -39.34 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.00 Total: -3.19 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -3.14 Total: -22.93 kcal Atomic # 7 Polarization: -28.83 SS G_CDS: 0.77 Total: -28.05 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.07 Total: -6.97 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.15 -6.19 -39.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260279578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.422 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds