Wall clock time and date at job start Mon Mar 30 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46623 * 2 1 4 4 F 1.39889 * 109.47283 * 240.00037 * 2 1 3 5 5 C 1.52999 * 109.46887 * 119.99484 * 2 1 3 6 6 H 1.08994 * 109.47646 * 304.79685 * 5 2 1 7 7 C 1.50705 * 109.47028 * 64.80268 * 5 2 1 8 8 H 1.07995 * 120.00212 * 54.99551 * 7 5 2 9 9 C 1.37876 * 119.99727 * 234.99911 * 7 5 2 10 10 N 1.31512 * 120.00144 * 173.90704 * 9 7 5 11 11 Si 1.86797 * 120.00170 * 353.90196 * 9 7 5 12 12 H 1.48501 * 109.47372 * 85.64886 * 11 9 7 13 13 H 1.48500 * 109.47626 * 205.64996 * 11 9 7 14 14 H 1.48503 * 109.47184 * 325.65064 * 11 9 7 15 15 C 1.50700 * 109.46903 * 184.79556 * 5 2 1 16 16 C 1.38245 * 119.97525 * 120.00327 * 15 5 2 17 17 C 1.38193 * 120.02759 * 180.02562 * 16 15 5 18 18 C 1.38464 * 119.97684 * 359.97438 * 17 16 15 19 19 F 1.35099 * 120.02489 * 179.97438 * 18 17 16 20 20 C 1.38454 * 119.94403 * 0.25634 * 18 17 16 21 21 C 1.38198 * 119.97683 * 359.47002 * 20 18 17 22 22 H 1.09005 * 109.47328 * 300.67415 * 1 2 3 23 23 H 1.08991 * 109.47566 * 60.67573 * 1 2 3 24 24 H 1.09006 * 109.47051 * 180.67721 * 1 2 3 25 25 H 0.96997 * 120.00519 * 179.97438 * 10 9 7 26 26 H 1.08001 * 119.98351 * 0.02562 * 16 15 5 27 27 H 1.08007 * 120.01310 * 180.02562 * 17 16 15 28 28 H 1.08006 * 120.01265 * 179.74192 * 20 18 17 29 29 H 1.08004 * 119.99094 * 180.29936 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6594 -1.1422 5 6 2.0400 -0.7211 1.2493 6 1 1.6082 -0.2593 2.1372 7 6 1.6371 -2.1722 1.1914 8 1 1.9059 -2.7735 0.3355 9 6 0.9252 -2.7320 2.2310 10 7 0.4701 -3.9616 2.1294 11 14 0.6072 -1.7438 3.7840 12 1 -0.6113 -0.9147 3.6024 13 1 0.4099 -2.6697 4.9282 14 1 1.7702 -0.8615 4.0562 15 6 3.5423 -0.6191 1.3101 16 6 4.1497 -0.0055 2.3898 17 6 5.5273 0.0892 2.4464 18 6 6.2992 -0.4314 1.4215 19 9 7.6459 -0.3389 1.4756 20 6 5.6895 -1.0415 0.3385 21 6 4.3120 -1.1400 0.2867 22 1 -0.3634 0.5243 0.8839 23 1 -0.3634 0.5032 -0.8959 24 1 -0.3633 -1.0277 0.0121 25 1 -0.0304 -4.3556 2.8609 26 1 3.5475 0.4001 3.1892 27 1 6.0016 0.5683 3.2902 28 1 6.2904 -1.4442 -0.4636 29 1 3.8364 -1.6202 -0.5557 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260343237.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:20 Heat of formation + Delta-G solvation = -100.681643 kcal Electronic energy + Delta-G solvation = -15544.109323 eV Core-core repulsion = 12680.846439 eV Total energy + Delta-G solvation = -2863.262884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.79961 -48.29821 -40.00015 -36.14380 -33.78490 -31.95793 -31.45539 -28.56285 -25.55115 -23.94425 -22.92591 -21.23567 -19.19520 -18.54213 -17.11305 -16.92822 -16.71611 -16.51506 -16.41594 -15.68851 -15.16803 -14.88259 -14.35208 -14.19939 -14.08265 -13.47230 -13.33563 -13.30613 -12.85741 -12.75157 -12.35224 -12.01100 -11.81823 -11.61137 -11.18355 -11.12523 -10.67118 -9.93409 -9.29766 -8.26548 -6.30667 0.33332 0.41270 1.36260 1.40127 1.48258 2.35870 2.75495 3.10798 3.38725 3.85018 3.97787 4.04432 4.09155 4.26027 4.30124 4.44469 4.56087 4.63126 4.80360 5.02378 5.11819 5.22190 5.26200 5.33590 5.45042 5.50155 5.61664 5.84124 6.08001 6.33714 6.76076 7.32459 8.89786 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.010622 C = 0.008958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.215574 B = 2635.436463 C = 3124.978867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 H 0.090 0.910 4 F -0.228 7.228 5 C 0.019 3.981 6 H 0.070 0.930 7 C -0.493 4.493 8 H 0.033 0.967 9 C 0.017 3.983 10 N -0.945 5.945 11 Si 0.927 3.073 12 H -0.255 1.255 13 H -0.296 1.296 14 H -0.235 1.235 15 C -0.073 4.073 16 C -0.110 4.110 17 C -0.148 4.148 18 C 0.063 3.937 19 F -0.148 7.148 20 C -0.156 4.156 21 C -0.092 4.092 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.265 0.735 26 H 0.142 0.858 27 H 0.156 0.844 28 H 0.144 0.856 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 11.359 0.714 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.108 0.892 4 F -0.210 7.210 5 C 0.000 4.000 6 H 0.088 0.912 7 C -0.531 4.531 8 H 0.052 0.948 9 C -0.180 4.180 10 N -0.585 5.585 11 Si 0.751 3.249 12 H -0.179 1.179 13 H -0.223 1.223 14 H -0.158 1.158 15 C -0.073 4.073 16 C -0.128 4.128 17 C -0.166 4.166 18 C 0.044 3.956 19 F -0.127 7.127 20 C -0.175 4.175 21 C -0.110 4.110 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.162 0.838 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.370 11.205 0.769 12.449 hybrid contribution -0.065 -0.574 0.478 0.750 sum 5.305 10.631 1.247 11.947 Atomic orbital electron populations 1.22227 0.94269 1.02862 1.03075 1.21807 0.95245 0.94772 0.82149 0.89234 1.92663 1.90344 1.84213 1.53742 1.18915 0.89146 0.95989 0.95995 0.91238 1.20818 1.33439 0.94298 1.04527 0.94824 1.25935 0.94664 0.95810 1.01615 1.70048 1.37963 1.16593 1.33872 0.86031 0.80719 0.79349 0.78830 1.17897 1.22272 1.15789 1.20571 0.97535 0.95032 0.94186 1.21156 0.94109 0.99365 0.98138 1.21266 0.93859 1.02386 0.99119 1.17739 0.76652 1.03608 0.97570 1.91438 1.29767 1.94812 1.96702 1.21265 0.95327 1.02094 0.98815 1.21069 0.92623 0.97970 0.99334 0.90229 0.90765 0.93282 0.92576 0.84018 0.82594 0.83840 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.76 9.47 71.98 0.68 -5.08 15 2 C 0.10 3.58 3.56 30.59 0.11 3.69 15 3 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 4 F -0.23 -9.59 14.27 44.97 0.64 -8.95 15 5 C 0.02 0.78 1.81 -12.28 -0.02 0.76 15 6 H 0.07 2.72 4.57 -2.39 -0.01 2.71 15 7 C -0.49 -26.13 7.10 25.60 0.18 -25.95 15 8 H 0.03 2.06 7.96 -2.91 -0.02 2.04 15 9 C 0.02 0.95 5.47 84.65 0.46 1.41 15 10 N -0.95 -56.85 13.96 21.45 0.30 -56.55 15 11 Si 0.93 39.97 26.94 68.60 1.85 41.82 15 12 H -0.25 -10.18 7.11 99.48 0.71 -9.47 15 13 H -0.30 -13.16 7.11 99.48 0.71 -12.45 15 14 H -0.23 -8.93 6.61 99.48 0.66 -8.27 15 15 C -0.07 -2.84 4.77 -19.86 -0.09 -2.94 15 16 C -0.11 -3.66 9.67 22.26 0.22 -3.44 15 17 C -0.15 -4.44 10.03 22.31 0.22 -4.22 15 18 C 0.06 2.04 7.30 22.38 0.16 2.21 15 19 F -0.15 -4.58 17.27 44.97 0.78 -3.80 15 20 C -0.16 -5.29 10.03 22.31 0.22 -5.07 15 21 C -0.09 -3.57 8.58 22.26 0.19 -3.38 15 22 H 0.08 2.39 8.14 -2.38 -0.02 2.37 15 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.05 2.05 7.35 -2.38 -0.02 2.03 15 25 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 26 H 0.14 4.14 7.74 -2.91 -0.02 4.12 15 27 H 0.16 3.65 8.06 -2.91 -0.02 3.63 15 28 H 0.14 4.18 8.06 -2.91 -0.02 4.16 15 29 H 0.12 5.11 6.45 -2.91 -0.02 5.09 15 Total: -1.00 -61.45 253.97 7.00 -54.45 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.10 Total: 15.04 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 2.34 Total: -42.01 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.30 Total: -56.55 kcal Atomic # 9 Polarization: -14.17 SS G_CDS: 1.42 Total: -12.75 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.85 Total: 41.82 kcal Total: -61.45 7.00 -54.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260343237.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.233 kcal (2) G-P(sol) polarization free energy of solvation -61.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds