Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38239 * 119.98721 * 2 1 4 4 C 1.38183 * 120.04832 * 180.27425 * 3 2 1 5 5 C 1.38497 * 120.02804 * 359.70109 * 4 3 2 6 6 F 1.35103 * 120.01374 * 180.02562 * 5 4 3 7 7 C 1.38397 * 119.97392 * 0.02562 * 5 4 3 8 8 C 1.50699 * 120.02635 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47188 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47172 * 300.02472 * 8 7 5 11 11 C 1.50700 * 109.47115 * 60.02408 * 8 7 5 12 12 H 1.08009 * 119.99902 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00330 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99672 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00282 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47176 * 59.99966 * 15 13 11 17 17 H 1.48496 * 109.47391 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47316 * 299.99944 * 15 13 11 19 19 C 1.38438 * 119.94948 * 0.02562 * 7 5 4 20 20 F 1.35104 * 120.01364 * 179.97438 * 19 7 5 21 21 H 1.08998 * 109.47479 * 270.27472 * 1 2 3 22 22 H 1.09001 * 109.47188 * 30.27841 * 1 2 3 23 23 H 1.08999 * 109.46924 * 150.27422 * 1 2 3 24 24 H 1.07996 * 119.97631 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.98431 * 179.72479 * 4 3 2 26 26 H 1.09003 * 109.47056 * 59.99821 * 10 8 7 27 27 H 1.08999 * 109.47235 * 179.97438 * 10 8 7 28 28 H 1.09001 * 109.47308 * 299.99751 * 10 8 7 29 29 H 0.97007 * 120.00376 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1973 0.0000 4 6 3.5797 1.1988 -0.0057 5 6 4.2740 0.0005 -0.0052 6 9 5.6251 0.0023 -0.0103 7 6 3.5834 -1.1988 0.0005 8 6 4.3377 -2.5034 0.0005 9 1 3.6300 -3.3323 0.0049 10 6 5.2127 -2.5866 -1.2519 11 6 5.2088 -2.5800 1.2278 12 1 5.2158 -1.7652 1.9368 13 6 5.9977 -3.6897 1.4452 14 7 5.9903 -4.6812 0.5812 15 14 7.0768 -3.7850 2.9669 16 1 6.2272 -3.7052 4.1822 17 1 7.8212 -5.0699 2.9663 18 1 8.0406 -2.6552 2.9618 19 6 2.1990 -1.1991 0.0052 20 9 1.5235 -2.3692 0.0102 21 1 -0.3634 0.0049 1.0276 22 1 -0.3633 0.8875 -0.5182 23 1 -0.3633 -0.8924 -0.5096 24 1 1.6573 2.1323 -0.0004 25 1 4.1184 2.1349 -0.0102 26 1 5.9205 -1.7576 -1.2563 27 1 5.7586 -3.5300 -1.2517 28 1 4.5827 -2.5312 -2.1396 29 1 6.5455 -5.4618 0.7339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260356381.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = -81.425146 kcal Electronic energy + Delta-G solvation = -15678.889252 eV Core-core repulsion = 12816.461392 eV Total energy + Delta-G solvation = -2862.427860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.31949 -48.09578 -38.50144 -34.69756 -32.10367 -31.07815 -28.55587 -26.21652 -25.14442 -22.83452 -21.64038 -19.60388 -17.43786 -16.98991 -16.03091 -15.23199 -15.05185 -14.78498 -14.52211 -14.31435 -13.74523 -13.12127 -13.03098 -12.72012 -12.38819 -11.76740 -11.74272 -11.40671 -11.22726 -11.10388 -10.83858 -10.76131 -10.35529 -10.06142 -9.53191 -9.07287 -8.36381 -8.09849 -7.90681 -6.00470 -4.07268 1.49963 1.65006 3.33673 3.37164 3.40739 3.91512 4.44341 4.58460 4.99059 5.04806 5.13755 5.31387 5.41945 5.52682 5.72351 5.90117 6.02595 6.31504 6.38165 6.59006 6.64275 6.68568 6.87032 7.07183 7.16212 7.43666 7.66154 7.88779 8.05744 8.33198 8.91943 9.56522 11.05617 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.032466 B = 0.009587 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.238837 B = 2919.901330 C = 3213.642719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.141 4.141 3 C -0.092 4.092 4 C -0.171 4.171 5 C 0.129 3.871 6 F -0.121 7.121 7 C -0.101 4.101 8 C 0.073 3.927 9 H 0.045 0.955 10 C -0.138 4.138 11 C -0.506 4.506 12 H 0.055 0.945 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.113 3.887 20 F -0.132 7.132 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.007 0.993 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 9.667 -1.912 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.142 4.142 3 C -0.111 4.111 4 C -0.190 4.190 5 C 0.109 3.891 6 F -0.099 7.099 7 C -0.103 4.103 8 C 0.055 3.945 9 H 0.063 0.937 10 C -0.195 4.195 11 C -0.544 4.544 12 H 0.073 0.927 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.093 3.907 20 F -0.110 7.110 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.026 0.974 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.273 9.429 -1.946 12.066 hybrid contribution 0.784 -0.284 0.858 1.197 sum -6.489 9.145 -1.088 11.266 Atomic orbital electron populations 1.20630 0.90546 1.02759 1.02360 1.19839 0.96712 0.91959 1.05667 1.20440 0.92886 0.96775 1.00956 1.21092 0.94839 0.97000 1.06046 1.17211 0.77671 0.92814 1.01361 1.91509 1.28019 1.97115 1.93236 1.20842 0.92292 0.98707 0.98414 1.17840 0.94008 0.86972 0.95699 0.93654 1.21843 0.99310 1.03829 0.94560 1.20935 1.24337 1.03470 1.05644 0.92654 1.24908 0.96732 0.95440 0.96640 1.69873 1.40168 1.07365 1.35372 0.86594 0.80586 0.77280 0.83235 1.20238 1.21195 1.20123 1.17135 0.89080 0.80843 1.03631 1.91452 1.79654 1.46147 1.93760 0.91251 0.91459 0.91437 0.85134 0.85077 0.94359 0.89207 0.97363 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.83 36.00 0.35 -0.96 15 2 C -0.14 -2.26 5.89 -104.55 -0.62 -2.87 15 3 C -0.09 -1.33 9.70 -39.60 -0.38 -1.71 15 4 C -0.17 -2.76 10.02 -39.51 -0.40 -3.16 15 5 C 0.13 2.65 6.69 -39.43 -0.26 2.39 15 6 F -0.12 -2.68 14.39 2.25 0.03 -2.65 15 7 C -0.10 -2.27 4.75 -104.49 -0.50 -2.76 15 8 C 0.07 1.91 2.37 -92.93 -0.22 1.69 15 9 H 0.05 1.28 7.13 -51.93 -0.37 0.91 15 10 C -0.14 -3.48 8.76 37.16 0.33 -3.15 15 11 C -0.51 -14.25 7.59 -34.44 -0.26 -14.52 15 12 H 0.06 1.56 7.60 -52.48 -0.40 1.16 15 13 C 0.06 1.81 5.30 -17.82 -0.09 1.72 15 14 N -0.89 -25.74 11.32 55.43 0.63 -25.11 15 15 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 15 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 19 C 0.11 2.26 7.19 -39.43 -0.28 1.98 15 20 F -0.13 -2.75 15.40 2.25 0.03 -2.71 15 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.07 0.66 8.09 -51.93 -0.42 0.24 15 23 H 0.07 0.85 7.64 -51.93 -0.40 0.45 15 24 H 0.13 1.39 8.06 -52.49 -0.42 0.96 15 25 H 0.13 1.74 8.06 -52.48 -0.42 1.32 15 26 H 0.04 0.94 6.31 -51.93 -0.33 0.61 15 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 15 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 15 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 253.58 15.07 3.82 3.82 Total: -1.00 -29.54 253.58 -5.89 -35.43 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -3.05 Total: -4.16 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -2.33 Total: -21.36 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.63 Total: -25.11 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.07 Total: -5.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.54 -5.89 -35.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356381.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.993 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds