Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38239 * 119.98721 * 2 1 4 4 C 1.38183 * 120.04832 * 180.27425 * 3 2 1 5 5 C 1.38497 * 120.02804 * 359.70109 * 4 3 2 6 6 F 1.35103 * 120.01374 * 180.02562 * 5 4 3 7 7 C 1.38397 * 119.97392 * 0.02562 * 5 4 3 8 8 C 1.50699 * 120.02635 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47188 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47172 * 300.02472 * 8 7 5 11 11 C 1.50700 * 109.47115 * 60.02408 * 8 7 5 12 12 H 1.08009 * 119.99902 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00330 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99672 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00282 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47176 * 59.99966 * 15 13 11 17 17 H 1.48496 * 109.47391 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47316 * 299.99944 * 15 13 11 19 19 C 1.38438 * 119.94948 * 0.02562 * 7 5 4 20 20 F 1.35104 * 120.01364 * 179.97438 * 19 7 5 21 21 H 1.08998 * 109.47479 * 270.27472 * 1 2 3 22 22 H 1.09001 * 109.47188 * 30.27841 * 1 2 3 23 23 H 1.08999 * 109.46924 * 150.27422 * 1 2 3 24 24 H 1.07996 * 119.97631 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.98431 * 179.72479 * 4 3 2 26 26 H 1.09003 * 109.47056 * 59.99821 * 10 8 7 27 27 H 1.08999 * 109.47235 * 179.97438 * 10 8 7 28 28 H 1.09001 * 109.47308 * 299.99751 * 10 8 7 29 29 H 0.97007 * 120.00376 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1973 0.0000 4 6 3.5797 1.1988 -0.0057 5 6 4.2740 0.0005 -0.0052 6 9 5.6251 0.0023 -0.0103 7 6 3.5834 -1.1988 0.0005 8 6 4.3377 -2.5034 0.0005 9 1 3.6300 -3.3323 0.0049 10 6 5.2127 -2.5866 -1.2519 11 6 5.2088 -2.5800 1.2278 12 1 5.2158 -1.7652 1.9368 13 6 5.9977 -3.6897 1.4452 14 7 5.9903 -4.6812 0.5812 15 14 7.0768 -3.7850 2.9669 16 1 6.2272 -3.7052 4.1822 17 1 7.8212 -5.0699 2.9663 18 1 8.0406 -2.6552 2.9618 19 6 2.1990 -1.1991 0.0052 20 9 1.5235 -2.3692 0.0102 21 1 -0.3634 0.0049 1.0276 22 1 -0.3633 0.8875 -0.5182 23 1 -0.3633 -0.8924 -0.5096 24 1 1.6573 2.1323 -0.0004 25 1 4.1184 2.1349 -0.0102 26 1 5.9205 -1.7576 -1.2563 27 1 5.7586 -3.5300 -1.2517 28 1 4.5827 -2.5312 -2.1396 29 1 6.5455 -5.4618 0.7339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260356381.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = -97.739071 kcal Electronic energy + Delta-G solvation = -15679.596677 eV Core-core repulsion = 12816.461392 eV Total energy + Delta-G solvation = -2863.135285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.86939 -49.69300 -39.90384 -36.57895 -33.80697 -32.58575 -30.24926 -27.44119 -27.28738 -24.49660 -23.07200 -21.33169 -18.93438 -18.74359 -17.85338 -16.86971 -16.79700 -16.36692 -16.12321 -15.81541 -15.22353 -14.80385 -14.46577 -14.15460 -13.77591 -13.64292 -13.22459 -12.98278 -12.90419 -12.78662 -12.53476 -12.38982 -12.23412 -12.02836 -11.37644 -11.13001 -10.52192 -9.58657 -9.34603 -8.15291 -6.29997 0.11268 0.24785 1.37470 1.40083 1.47741 2.37811 2.55236 3.11255 3.18704 3.63932 3.82344 3.86971 4.06895 4.31027 4.62749 4.76517 4.83094 4.89808 4.98497 5.03537 5.13867 5.17118 5.23609 5.31613 5.39591 5.49853 5.77999 5.89830 6.04002 6.22054 6.74603 7.36932 8.89882 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.032466 B = 0.009587 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.238837 B = 2919.901330 C = 3213.642719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.128 4.128 3 C -0.071 4.071 4 C -0.153 4.153 5 C 0.098 3.902 6 F -0.140 7.140 7 C -0.139 4.139 8 C 0.073 3.927 9 H 0.007 0.993 10 C -0.126 4.126 11 C -0.521 4.521 12 H 0.047 0.953 13 C 0.014 3.986 14 N -0.917 5.917 15 Si 0.959 3.041 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.270 1.270 19 C 0.083 3.917 20 F -0.147 7.147 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.059 0.941 24 H 0.188 0.812 25 H 0.168 0.832 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 12.563 -1.368 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.129 4.129 3 C -0.088 4.088 4 C -0.172 4.172 5 C 0.079 3.921 6 F -0.119 7.119 7 C -0.141 4.141 8 C 0.055 3.945 9 H 0.025 0.975 10 C -0.184 4.184 11 C -0.559 4.559 12 H 0.065 0.935 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.783 3.217 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.196 1.196 19 C 0.063 3.937 20 F -0.126 7.126 21 H 0.101 0.899 22 H 0.123 0.877 23 H 0.078 0.922 24 H 0.205 0.795 25 H 0.185 0.815 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.537 12.330 -1.406 15.063 hybrid contribution 1.069 -1.110 0.656 1.675 sum -7.468 11.220 -0.750 13.499 Atomic orbital electron populations 1.20766 0.87537 1.04276 1.03681 1.20347 0.98845 0.90739 1.02948 1.21106 0.92179 0.98136 0.97384 1.21524 0.95783 0.96445 1.03404 1.17583 0.77096 0.93887 1.03573 1.91446 1.29490 1.97240 1.93709 1.20612 0.93486 0.97706 1.02261 1.17591 0.93346 0.88352 0.95233 0.97451 1.21665 0.99206 1.02226 0.95254 1.21187 1.24930 1.03357 1.06427 0.93470 1.25742 0.98051 0.95089 0.99623 1.70005 1.40858 1.07790 1.36954 0.85601 0.78857 0.77577 0.79634 1.19610 1.20348 1.19553 1.17521 0.88616 0.81960 1.05556 1.91403 1.79698 1.47377 1.94115 0.89877 0.87675 0.92244 0.79519 0.81464 0.94339 0.91799 0.95942 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 9.83 71.23 0.70 -1.48 15 2 C -0.13 -3.69 5.89 -19.81 -0.12 -3.81 15 3 C -0.07 -1.66 9.70 22.26 0.22 -1.44 15 4 C -0.15 -4.38 10.02 22.32 0.22 -4.16 15 5 C 0.10 3.98 6.69 22.37 0.15 4.13 15 6 F -0.14 -6.32 14.39 44.97 0.65 -5.67 15 7 C -0.14 -6.40 4.75 -19.78 -0.09 -6.49 15 8 C 0.07 4.03 2.37 -12.29 -0.03 4.00 15 9 H 0.01 0.45 7.13 -2.39 -0.02 0.43 15 10 C -0.13 -6.66 8.76 71.98 0.63 -6.03 15 11 C -0.52 -30.53 7.59 25.60 0.19 -30.33 15 12 H 0.05 2.76 7.60 -2.91 -0.02 2.74 15 13 C 0.01 0.79 5.30 84.65 0.45 1.24 15 14 N -0.92 -55.08 11.32 21.45 0.24 -54.84 15 15 Si 0.96 45.44 29.54 68.60 2.03 47.47 15 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 19 C 0.08 3.33 7.19 22.37 0.16 3.49 15 20 F -0.15 -6.37 15.40 44.97 0.69 -5.68 15 21 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.10 1.40 8.09 -2.39 -0.02 1.38 15 23 H 0.06 1.34 7.64 -2.39 -0.02 1.32 15 24 H 0.19 2.41 8.06 -2.91 -0.02 2.39 15 25 H 0.17 3.57 8.06 -2.91 -0.02 3.55 15 26 H 0.04 1.97 6.31 -2.39 -0.02 1.95 15 27 H 0.06 3.67 6.07 -2.39 -0.01 3.66 15 28 H 0.02 1.05 8.14 -2.39 -0.02 1.03 15 29 H 0.26 14.97 8.31 -92.70 -0.77 14.20 15 Total: -1.00 -68.30 253.58 7.25 -61.05 By element: Atomic # 1 Polarization: -2.59 SS G_CDS: 1.16 Total: -1.43 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 2.48 Total: -40.89 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.24 Total: -54.84 kcal Atomic # 9 Polarization: -12.69 SS G_CDS: 1.34 Total: -11.35 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.30 7.25 -61.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356381.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.693 kcal (2) G-P(sol) polarization free energy of solvation -68.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds