Wall clock time and date at job start Mon Mar 30 2020 03:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46913 * 2 1 4 4 C 1.50697 * 109.47142 * 239.99286 * 2 1 3 5 5 H 1.07997 * 119.99999 * 245.61314 * 4 2 1 6 6 C 1.37879 * 119.99901 * 65.62069 * 4 2 1 7 7 N 1.31512 * 120.00130 * 196.73063 * 6 4 2 8 8 Si 1.86807 * 119.99965 * 16.73548 * 6 4 2 9 9 H 1.48496 * 109.46682 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.46693 * 299.99789 * 8 6 4 11 11 H 1.48498 * 109.47210 * 59.99824 * 8 6 4 12 12 C 1.53002 * 109.46961 * 119.99282 * 2 1 3 13 13 F 1.39898 * 109.46927 * 55.00145 * 12 2 1 14 14 F 1.39898 * 109.47037 * 175.00204 * 12 2 1 15 15 C 1.50703 * 109.47136 * 295.00362 * 12 2 1 16 16 C 1.38238 * 119.99527 * 269.72386 * 15 12 2 17 17 C 1.38231 * 119.99562 * 179.76591 * 16 15 12 18 18 C 1.38241 * 120.00231 * 0.50940 * 17 16 15 19 19 C 1.38235 * 119.99723 * 359.74854 * 18 17 16 20 20 C 1.38235 * 120.00286 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47406 * 306.82594 * 1 2 3 22 22 H 1.08994 * 109.46776 * 66.82574 * 1 2 3 23 23 H 1.08999 * 109.47099 * 186.82603 * 1 2 3 24 24 H 0.96999 * 119.99632 * 356.20107 * 7 6 4 25 25 H 1.07993 * 120.00428 * 0.02562 * 16 15 12 26 26 H 1.08006 * 120.00305 * 180.23312 * 17 16 15 27 27 H 1.07995 * 120.00321 * 179.72283 * 18 17 16 28 28 H 1.08005 * 119.99988 * 179.97438 * 19 18 17 29 29 H 1.08001 * 120.00713 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5765 -1.6384 -1.1337 6 6 1.7975 -0.1759 -2.4794 7 7 1.9310 -0.9259 -3.5514 8 14 1.2897 1.6138 -2.6489 9 1 1.1001 1.9405 -4.0850 10 1 0.0172 1.8386 -1.9173 11 1 2.3488 2.4849 -2.0792 12 6 2.0400 -0.7211 1.2494 13 9 1.4822 -2.0027 1.3084 14 9 3.4343 -0.8215 1.1934 15 6 1.6412 0.0573 2.4766 16 6 2.4839 1.0294 2.9825 17 6 2.1160 1.7468 4.1054 18 6 0.9101 1.4848 4.7286 19 6 0.0699 0.5091 4.2258 20 6 0.4352 -0.2044 3.0995 21 1 -0.3634 0.6159 0.8226 22 1 -0.3633 0.4044 -0.9447 23 1 -0.3633 -1.0204 0.1221 24 1 2.2478 -1.8389 -3.4681 25 1 3.4278 1.2313 2.4981 26 1 2.7726 2.5089 4.4985 27 1 0.6247 2.0422 5.6084 28 1 -0.8720 0.3041 4.7129 29 1 -0.2210 -0.9671 2.7069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389557.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:11 Heat of formation + Delta-G solvation = -84.383003 kcal Electronic energy + Delta-G solvation = -15826.437450 eV Core-core repulsion = 12963.881328 eV Total energy + Delta-G solvation = -2862.556122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.09411 -46.08656 -38.96965 -34.62318 -32.10307 -30.82578 -30.36457 -25.57448 -24.66112 -22.42305 -21.63344 -19.67721 -17.83031 -17.09079 -16.52346 -15.68421 -15.39715 -14.44700 -14.37629 -13.74151 -13.39615 -13.24112 -12.82020 -12.57006 -12.40119 -12.31449 -11.95206 -11.84328 -11.41513 -11.02994 -10.97757 -10.54428 -10.20458 -9.92441 -9.58336 -8.95674 -8.81350 -8.72880 -8.28005 -6.51506 -4.12678 1.35751 1.49170 3.34166 3.39453 3.56527 3.83633 4.31548 4.44421 4.92451 5.01885 5.17055 5.19248 5.27872 5.47415 5.59860 5.65311 5.79957 5.96110 6.14589 6.30970 6.49546 6.52876 6.55089 6.55431 6.77573 6.94645 7.03627 7.28533 7.86858 8.35001 8.83944 9.55364 10.89692 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.034628 B = 0.009765 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.410694 B = 2866.650489 C = 3080.105148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.010 4.010 3 H 0.045 0.955 4 C -0.600 4.600 5 H 0.062 0.938 6 C 0.036 3.964 7 N -0.901 5.901 8 Si 1.042 2.958 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.347 3.653 13 F -0.199 7.199 14 F -0.198 7.198 15 C -0.133 4.133 16 C -0.092 4.092 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.088 4.088 21 H 0.030 0.970 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.269 0.731 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 5.445 14.360 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 H 0.063 0.937 4 C -0.637 4.637 5 H 0.081 0.919 6 C -0.170 4.170 7 N -0.534 5.534 8 Si 0.870 3.130 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.208 1.208 12 C 0.310 3.690 13 F -0.180 7.180 14 F -0.179 7.179 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.143 4.143 18 C -0.135 4.135 19 C -0.144 4.144 20 C -0.106 4.106 21 H 0.049 0.951 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.148 0.852 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.261 6.540 13.227 15.111 hybrid contribution 0.612 -1.376 1.126 1.880 sum -2.649 5.163 14.353 15.481 Atomic orbital electron populations 1.22250 0.97015 1.00919 1.00743 1.19943 0.94306 0.96802 0.91945 0.93718 1.21789 1.41033 1.10413 0.90506 0.91946 1.25725 0.94454 1.04985 0.91831 1.70842 1.41428 1.09936 1.31196 0.84086 0.77205 0.75345 0.76318 1.20875 1.19876 1.20789 1.19668 0.74522 0.79617 0.95162 1.92909 1.85183 1.42496 1.97414 1.92928 1.31116 1.96399 1.97445 1.20657 0.96693 0.99246 0.96782 1.21022 0.99389 0.94767 0.95878 1.21092 0.97056 0.99974 0.96130 1.21175 0.94611 0.97905 0.99783 1.21097 0.99870 0.96793 0.96600 1.21012 0.95583 0.99126 0.94881 0.95078 0.91684 0.92840 0.92039 0.85203 0.85798 0.86090 0.85825 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.14 37.16 0.30 -3.02 15 2 C -0.01 -0.25 1.56 -91.77 -0.14 -0.39 15 3 H 0.04 1.06 6.81 -51.93 -0.35 0.71 15 4 C -0.60 -17.15 8.30 -34.44 -0.29 -17.44 15 5 H 0.06 1.97 7.95 -52.49 -0.42 1.55 15 6 C 0.04 1.03 5.30 -17.82 -0.09 0.94 15 7 N -0.90 -27.73 13.70 55.43 0.76 -26.98 15 8 Si 1.04 24.92 26.27 -169.99 -4.47 20.45 15 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 10 H -0.27 -5.95 5.72 56.52 0.32 -5.63 15 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 12 C 0.35 7.70 1.50 -27.88 -0.04 7.66 15 13 F -0.20 -4.60 15.20 2.25 0.03 -4.56 15 14 F -0.20 -4.65 15.75 2.25 0.04 -4.61 15 15 C -0.13 -2.43 4.58 -104.62 -0.48 -2.91 15 16 C -0.09 -1.49 9.40 -39.58 -0.37 -1.86 15 17 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 15 18 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 15 19 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 15 20 C -0.09 -1.40 7.84 -39.58 -0.31 -1.72 15 21 H 0.03 0.58 6.73 -51.93 -0.35 0.23 15 22 H 0.06 1.47 4.81 -51.93 -0.25 1.22 15 23 H 0.05 1.16 7.48 -51.93 -0.39 0.77 15 24 H 0.27 8.32 8.73 -40.82 -0.36 7.96 15 25 H 0.13 2.05 7.60 -52.49 -0.40 1.65 15 26 H 0.12 1.26 8.06 -52.48 -0.42 0.84 15 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 15 28 H 0.12 1.25 8.06 -52.48 -0.42 0.83 15 29 H 0.13 2.03 7.59 -52.49 -0.40 1.63 15 LS Contribution 249.47 15.07 3.76 3.76 Total: -1.00 -30.97 249.47 -5.55 -36.52 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.05 Total: 0.02 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -2.62 Total: -24.60 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.76 Total: -26.98 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.47 Total: 20.45 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.97 -5.55 -36.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389557.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.867 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds