Wall clock time and date at job start Mon Mar 30 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46913 * 2 1 4 4 C 1.50697 * 109.47142 * 239.99286 * 2 1 3 5 5 H 1.07997 * 119.99999 * 245.61314 * 4 2 1 6 6 C 1.37879 * 119.99901 * 65.62069 * 4 2 1 7 7 N 1.31512 * 120.00130 * 196.73063 * 6 4 2 8 8 Si 1.86807 * 119.99965 * 16.73548 * 6 4 2 9 9 H 1.48496 * 109.46682 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.46693 * 299.99789 * 8 6 4 11 11 H 1.48498 * 109.47210 * 59.99824 * 8 6 4 12 12 C 1.53002 * 109.46961 * 119.99282 * 2 1 3 13 13 F 1.39898 * 109.46927 * 55.00145 * 12 2 1 14 14 F 1.39898 * 109.47037 * 175.00204 * 12 2 1 15 15 C 1.50703 * 109.47136 * 295.00362 * 12 2 1 16 16 C 1.38238 * 119.99527 * 269.72386 * 15 12 2 17 17 C 1.38231 * 119.99562 * 179.76591 * 16 15 12 18 18 C 1.38241 * 120.00231 * 0.50940 * 17 16 15 19 19 C 1.38235 * 119.99723 * 359.74854 * 18 17 16 20 20 C 1.38235 * 120.00286 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47406 * 306.82594 * 1 2 3 22 22 H 1.08994 * 109.46776 * 66.82574 * 1 2 3 23 23 H 1.08999 * 109.47099 * 186.82603 * 1 2 3 24 24 H 0.96999 * 119.99632 * 356.20107 * 7 6 4 25 25 H 1.07993 * 120.00428 * 0.02562 * 16 15 12 26 26 H 1.08006 * 120.00305 * 180.23312 * 17 16 15 27 27 H 1.07995 * 120.00321 * 179.72283 * 18 17 16 28 28 H 1.08005 * 119.99988 * 179.97438 * 19 18 17 29 29 H 1.08001 * 120.00713 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5765 -1.6384 -1.1337 6 6 1.7975 -0.1759 -2.4794 7 7 1.9310 -0.9259 -3.5514 8 14 1.2897 1.6138 -2.6489 9 1 1.1001 1.9405 -4.0850 10 1 0.0172 1.8386 -1.9173 11 1 2.3488 2.4849 -2.0792 12 6 2.0400 -0.7211 1.2494 13 9 1.4822 -2.0027 1.3084 14 9 3.4343 -0.8215 1.1934 15 6 1.6412 0.0573 2.4766 16 6 2.4839 1.0294 2.9825 17 6 2.1160 1.7468 4.1054 18 6 0.9101 1.4848 4.7286 19 6 0.0699 0.5091 4.2258 20 6 0.4352 -0.2044 3.0995 21 1 -0.3634 0.6159 0.8226 22 1 -0.3633 0.4044 -0.9447 23 1 -0.3633 -1.0204 0.1221 24 1 2.2478 -1.8389 -3.4681 25 1 3.4278 1.2313 2.4981 26 1 2.7726 2.5089 4.4985 27 1 0.6247 2.0422 5.6084 28 1 -0.8720 0.3041 4.7129 29 1 -0.2210 -0.9671 2.7069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389557.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:10 Heat of formation + Delta-G solvation = -102.997387 kcal Electronic energy + Delta-G solvation = -15827.244630 eV Core-core repulsion = 12963.881328 eV Total energy + Delta-G solvation = -2863.363302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.88620 -47.90369 -40.08923 -36.54806 -33.98480 -31.95733 -31.80350 -27.23605 -26.61374 -23.52655 -23.09537 -21.40309 -19.83377 -18.60404 -18.27217 -17.40536 -16.75411 -15.66914 -15.63694 -15.50331 -15.03924 -14.71753 -14.55672 -14.51826 -14.05336 -13.80149 -13.62243 -13.42446 -13.14801 -12.55894 -12.42005 -12.03565 -11.97394 -11.72383 -11.33343 -11.08527 -10.50779 -9.89377 -9.87555 -8.84054 -6.46873 0.23181 0.42761 1.42905 1.51375 1.70228 2.44863 2.72421 2.83477 2.98792 3.51621 3.63809 3.89569 4.10393 4.11415 4.25952 4.50260 4.55804 4.60663 4.74918 4.84550 4.88563 5.07536 5.10582 5.43228 5.47275 5.53105 5.57400 5.76917 5.93989 6.01645 6.43241 7.30935 8.55120 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.034628 B = 0.009765 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.410694 B = 2866.650489 C = 3080.105148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.015 4.015 3 H 0.054 0.946 4 C -0.607 4.607 5 H 0.012 0.988 6 C -0.015 4.015 7 N -0.931 5.931 8 Si 1.081 2.919 9 H -0.285 1.285 10 H -0.233 1.233 11 H -0.262 1.262 12 C 0.337 3.663 13 F -0.212 7.212 14 F -0.215 7.215 15 C -0.159 4.159 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.103 4.103 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.251 0.749 25 H 0.121 0.879 26 H 0.157 0.843 27 H 0.164 0.836 28 H 0.158 0.842 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 8.427 17.298 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 H 0.072 0.928 4 C -0.645 4.645 5 H 0.030 0.970 6 C -0.213 4.213 7 N -0.566 5.566 8 Si 0.901 3.099 9 H -0.211 1.211 10 H -0.157 1.157 11 H -0.187 1.187 12 C 0.301 3.699 13 F -0.194 7.194 14 F -0.196 7.196 15 C -0.160 4.160 16 C -0.129 4.129 17 C -0.135 4.135 18 C -0.120 4.120 19 C -0.136 4.136 20 C -0.121 4.121 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.139 0.861 26 H 0.174 0.826 27 H 0.182 0.818 28 H 0.175 0.825 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.890 9.499 16.197 19.403 hybrid contribution 1.179 -2.384 0.309 2.678 sum -3.712 7.114 16.506 18.353 Atomic orbital electron populations 1.22103 0.94875 1.01222 1.01779 1.19928 0.95930 0.96690 0.90861 0.92760 1.21928 1.40427 1.08882 0.93245 0.97005 1.27336 0.93826 1.08832 0.91305 1.70983 1.43866 1.09383 1.32358 0.83660 0.79318 0.70059 0.76911 1.21070 1.15735 1.18671 1.19896 0.73607 0.79361 0.97030 1.92869 1.85288 1.43636 1.97565 1.92881 1.32552 1.96477 1.97652 1.20337 0.98707 1.00558 0.96352 1.21123 0.99083 0.95235 0.97423 1.21474 0.97965 0.99593 0.94487 1.21705 0.93315 0.96799 1.00159 1.21494 1.01214 0.95825 0.95042 1.21100 0.94791 0.99939 0.96266 0.91498 0.92272 0.93687 0.94009 0.86066 0.82564 0.81841 0.82467 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.05 8.14 71.98 0.59 -5.46 15 2 C -0.01 -0.70 1.56 -11.54 -0.02 -0.72 15 3 H 0.05 2.53 6.81 -2.39 -0.02 2.51 15 4 C -0.61 -36.15 8.30 25.60 0.21 -35.94 15 5 H 0.01 0.79 7.95 -2.91 -0.02 0.76 15 6 C -0.01 -0.87 5.30 84.66 0.45 -0.42 15 7 N -0.93 -59.64 13.70 21.45 0.29 -59.35 15 8 Si 1.08 49.27 26.27 68.60 1.80 51.07 15 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 10 H -0.23 -9.17 5.72 99.48 0.57 -8.60 15 11 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 12 C 0.34 15.28 1.50 29.85 0.04 15.33 15 13 F -0.21 -10.21 15.20 44.97 0.68 -9.53 15 14 F -0.21 -10.53 15.75 44.97 0.71 -9.82 15 15 C -0.16 -5.63 4.58 -19.86 -0.09 -5.72 15 16 C -0.11 -3.35 9.40 22.27 0.21 -3.14 15 17 C -0.12 -2.53 10.05 22.27 0.22 -2.31 15 18 C -0.10 -1.86 10.05 22.27 0.22 -1.63 15 19 C -0.12 -2.50 10.05 22.27 0.22 -2.27 15 20 C -0.10 -3.04 7.84 22.27 0.17 -2.87 15 21 H 0.07 2.35 6.73 -2.39 -0.02 2.33 15 22 H 0.06 2.55 4.81 -2.39 -0.01 2.54 15 23 H 0.04 1.94 7.48 -2.39 -0.02 1.92 15 24 H 0.25 16.50 8.73 -92.71 -0.81 15.69 15 25 H 0.12 3.76 7.60 -2.91 -0.02 3.73 15 26 H 0.16 2.33 8.06 -2.91 -0.02 2.30 15 27 H 0.16 1.67 8.06 -2.91 -0.02 1.65 15 28 H 0.16 2.26 8.06 -2.91 -0.02 2.23 15 29 H 0.12 3.70 7.59 -2.91 -0.02 3.68 15 Total: -1.00 -71.41 249.47 6.70 -64.71 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.97 Total: 8.08 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 2.24 Total: -45.17 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.29 Total: -59.35 kcal Atomic # 9 Polarization: -20.74 SS G_CDS: 1.39 Total: -19.35 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 1.80 Total: 51.07 kcal Total: -71.41 6.70 -64.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389557.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.285 kcal (2) G-P(sol) polarization free energy of solvation -71.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds