Wall clock time and date at job start Mon Mar 30 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35720 * 117.00267 * 2 1 4 4 N 1.32222 * 119.69953 * 0.24797 * 3 2 1 5 5 C 1.31967 * 121.67626 * 180.24347 * 4 3 2 6 6 C 1.50693 * 119.56099 * 179.74809 * 5 4 3 7 7 H 1.08999 * 109.47347 * 185.01880 * 6 5 4 8 8 N 1.46902 * 109.47136 * 65.02342 * 6 5 4 9 9 C 1.50698 * 109.47445 * 305.02142 * 6 5 4 10 10 H 1.08001 * 119.99539 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00324 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99792 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 120.00142 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.46935 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46917 * 120.00203 * 13 11 9 16 16 H 1.48506 * 109.47008 * 239.99977 * 13 11 9 17 17 C 1.38067 * 120.87406 * 359.76747 * 5 4 3 18 18 C 1.38795 * 119.30837 * 359.97438 * 17 5 4 19 19 C 1.38568 * 118.46514 * 0.02562 * 18 17 5 20 20 F 1.35104 * 120.46411 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.47236 * 300.00087 * 1 2 3 22 22 H 1.08997 * 109.46604 * 59.99863 * 1 2 3 23 23 H 1.09001 * 109.47036 * 180.02562 * 1 2 3 24 24 H 1.00906 * 110.99727 * 176.04527 * 8 6 5 25 25 H 1.00897 * 110.99914 * 299.99435 * 8 6 5 26 26 H 0.97001 * 120.00259 * 179.97438 * 12 11 9 27 27 H 1.07996 * 120.34181 * 179.97438 * 17 5 4 28 28 H 1.07997 * 120.76549 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 7 1.3194 2.3144 0.0050 5 6 1.8776 3.5102 0.0004 6 6 1.0044 4.7383 0.0006 7 1 1.6278 5.6274 -0.0934 8 7 0.2483 4.8013 1.2586 9 6 0.0447 4.6727 -1.1594 10 1 0.0655 3.8264 -1.8301 11 6 -0.8589 5.6934 -1.3653 12 7 -0.8838 6.7241 -0.5488 13 14 -2.0479 5.6124 -2.8037 14 1 -1.8175 4.3593 -3.5663 15 1 -3.4428 5.6333 -2.2947 16 1 -1.8283 6.7806 -3.6939 17 6 3.2511 3.6509 -0.0050 18 6 4.0503 2.5161 -0.0051 19 6 3.4347 1.2747 -0.0002 20 9 4.1736 0.1437 -0.0006 21 1 -0.3634 0.5138 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.2963 5.6491 1.3110 25 1 -0.3379 3.9876 1.3692 26 1 -1.5193 7.4425 -0.6938 27 1 3.6988 4.6336 -0.0092 28 1 5.1271 2.5988 -0.0097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260393371.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:29 Heat of formation + Delta-G solvation = -51.124205 kcal Electronic energy + Delta-G solvation = -15449.353328 eV Core-core repulsion = 12608.159378 eV Total energy + Delta-G solvation = -2841.193951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.45137 -40.04768 -37.69915 -34.60402 -31.86290 -31.31521 -29.45061 -27.09452 -25.91745 -23.56053 -22.72091 -20.73715 -17.82918 -17.37590 -16.74408 -16.27825 -15.95674 -15.08956 -14.74171 -14.40475 -14.09859 -13.75765 -13.22598 -13.02194 -12.54315 -12.37411 -11.84970 -11.58595 -11.23742 -10.96274 -10.91031 -10.74277 -10.07725 -9.97888 -9.30810 -9.06919 -8.70408 -7.88441 -7.27224 -6.15184 -4.29138 1.49931 1.61802 3.18993 3.27933 3.31473 3.33051 4.15780 4.32073 4.55199 4.83119 5.07777 5.11912 5.38489 5.53306 5.64182 5.66301 5.96921 6.13971 6.33312 6.44566 6.60874 6.86793 7.27807 7.60681 7.71965 7.96928 8.47116 8.58394 8.85945 9.05812 9.41228 10.83838 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.032246 B = 0.008516 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.128288 B = 3287.078126 C = 3677.771181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.291 3.709 4 N -0.494 5.494 5 C 0.216 3.784 6 C 0.252 3.748 7 H 0.058 0.942 8 N -0.847 5.847 9 C -0.535 4.535 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.895 5.895 13 Si 0.899 3.101 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.186 4.186 18 C -0.078 4.078 19 C -0.004 4.004 20 F -0.138 7.138 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.358 0.642 25 H 0.320 0.680 26 H 0.266 0.734 27 H 0.143 0.857 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -7.387 1.112 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.110 3.890 4 N -0.217 5.217 5 C 0.079 3.921 6 C 0.141 3.859 7 H 0.076 0.924 8 N -0.377 5.377 9 C -0.575 4.575 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.535 5.535 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.206 4.206 18 C -0.104 4.104 19 C -0.026 4.026 20 F -0.117 7.117 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.109 0.891 24 H 0.175 0.825 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.161 0.839 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.653 -7.581 1.512 9.023 hybrid contribution -0.749 -0.021 -1.510 1.685 sum 3.904 -7.602 0.002 8.546 Atomic orbital electron populations 1.22839 0.77100 1.02243 1.03187 1.86219 1.23080 1.24293 1.88179 1.19975 0.87726 0.86401 0.94909 1.67387 1.38959 0.97811 1.17503 1.21868 0.91862 0.92383 0.85984 1.18057 0.91634 0.87197 0.89000 0.92435 1.59439 1.34228 1.08373 1.35671 1.21769 1.17561 1.05820 1.12323 0.92301 1.24988 0.97335 0.94779 0.96592 1.69735 1.37016 1.09267 1.37445 0.86424 0.80600 0.78065 0.82238 1.19816 1.20908 1.20863 1.21841 0.94186 0.99060 1.05551 1.21364 1.01033 0.90090 0.97945 1.17524 0.86647 0.83393 1.15084 1.91445 1.76304 1.49014 1.94895 0.92006 0.91944 0.89148 0.82510 0.87104 0.92443 0.83949 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 101.05 1.05 1.67 15 2 O -0.31 -5.63 10.35 -18.87 -0.20 -5.82 15 3 C 0.29 5.70 7.50 -17.07 -0.13 5.57 15 4 N -0.49 -10.49 8.75 -9.50 -0.08 -10.57 15 5 C 0.22 4.64 5.68 -82.60 -0.47 4.17 15 6 C 0.25 6.05 3.03 -70.02 -0.21 5.84 15 7 H 0.06 1.45 7.86 -51.93 -0.41 1.04 15 8 N -0.85 -19.85 9.18 -6.65 -0.06 -19.91 15 9 C -0.53 -14.05 8.52 -34.44 -0.29 -14.34 15 10 H 0.06 1.60 7.68 -52.49 -0.40 1.20 15 11 C 0.07 1.71 5.38 -17.82 -0.10 1.62 15 12 N -0.90 -23.87 11.54 55.43 0.64 -23.23 15 13 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 15 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 16 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 17 C -0.19 -3.34 9.70 -39.44 -0.38 -3.72 15 18 C -0.08 -1.25 10.16 -39.25 -0.40 -1.65 15 19 C 0.00 -0.08 7.35 -39.14 -0.29 -0.36 15 20 F -0.14 -2.40 17.13 2.25 0.04 -2.36 15 21 H 0.06 0.94 8.10 -51.93 -0.42 0.52 15 22 H 0.06 1.00 8.11 -51.93 -0.42 0.58 15 23 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.36 8.88 7.08 -39.29 -0.28 8.60 15 25 H 0.32 7.45 8.92 -39.29 -0.35 7.10 15 26 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 27 H 0.14 2.24 7.94 -52.49 -0.42 1.83 15 28 H 0.14 1.78 8.06 -52.49 -0.42 1.35 15 LS Contribution 255.71 15.07 3.85 3.85 Total: -1.00 -27.69 255.71 -4.73 -32.42 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -2.68 Total: 11.19 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.22 Total: -1.21 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.50 Total: -53.72 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.20 Total: -5.82 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.69 -4.73 -32.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393371.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.709 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds