Wall clock time and date at job start Mon Mar 30 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35720 * 117.00267 * 2 1 4 4 N 1.32222 * 119.69953 * 0.24797 * 3 2 1 5 5 C 1.31967 * 121.67626 * 180.24347 * 4 3 2 6 6 C 1.50693 * 119.56099 * 179.74809 * 5 4 3 7 7 H 1.08999 * 109.47347 * 185.01880 * 6 5 4 8 8 N 1.46902 * 109.47136 * 65.02342 * 6 5 4 9 9 C 1.50698 * 109.47445 * 305.02142 * 6 5 4 10 10 H 1.08001 * 119.99539 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00324 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99792 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 120.00142 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.46935 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46917 * 120.00203 * 13 11 9 16 16 H 1.48506 * 109.47008 * 239.99977 * 13 11 9 17 17 C 1.38067 * 120.87406 * 359.76747 * 5 4 3 18 18 C 1.38795 * 119.30837 * 359.97438 * 17 5 4 19 19 C 1.38568 * 118.46514 * 0.02562 * 18 17 5 20 20 F 1.35104 * 120.46411 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.47236 * 300.00087 * 1 2 3 22 22 H 1.08997 * 109.46604 * 59.99863 * 1 2 3 23 23 H 1.09001 * 109.47036 * 180.02562 * 1 2 3 24 24 H 1.00906 * 110.99727 * 176.04527 * 8 6 5 25 25 H 1.00897 * 110.99914 * 299.99435 * 8 6 5 26 26 H 0.97001 * 120.00259 * 179.97438 * 12 11 9 27 27 H 1.07996 * 120.34181 * 179.97438 * 17 5 4 28 28 H 1.07997 * 120.76549 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 7 1.3194 2.3144 0.0050 5 6 1.8776 3.5102 0.0004 6 6 1.0044 4.7383 0.0006 7 1 1.6278 5.6274 -0.0934 8 7 0.2483 4.8013 1.2586 9 6 0.0447 4.6727 -1.1594 10 1 0.0655 3.8264 -1.8301 11 6 -0.8589 5.6934 -1.3653 12 7 -0.8838 6.7241 -0.5488 13 14 -2.0479 5.6124 -2.8037 14 1 -1.8175 4.3593 -3.5663 15 1 -3.4428 5.6333 -2.2947 16 1 -1.8283 6.7806 -3.6939 17 6 3.2511 3.6509 -0.0050 18 6 4.0503 2.5161 -0.0051 19 6 3.4347 1.2747 -0.0002 20 9 4.1736 0.1437 -0.0006 21 1 -0.3634 0.5138 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.2963 5.6491 1.3110 25 1 -0.3379 3.9876 1.3692 26 1 -1.5193 7.4425 -0.6938 27 1 3.6988 4.6336 -0.0092 28 1 5.1271 2.5988 -0.0097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393371.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:29 Heat of formation + Delta-G solvation = -71.902008 kcal Electronic energy + Delta-G solvation = -15450.254322 eV Core-core repulsion = 12608.159378 eV Total energy + Delta-G solvation = -2842.094944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.84420 -41.50541 -39.11941 -36.43992 -33.54517 -32.97720 -31.01036 -28.51652 -27.75541 -25.18385 -24.14938 -22.41678 -19.27202 -18.93346 -18.39703 -17.88531 -17.39903 -16.90133 -16.10252 -16.05388 -15.61537 -15.23714 -14.95724 -14.51832 -14.07809 -13.87655 -13.46613 -13.19424 -12.87520 -12.75025 -12.68120 -12.17690 -11.93422 -11.85934 -10.73700 -10.70806 -10.58603 -9.39744 -9.16671 -8.13387 -6.34931 0.02204 0.22707 1.35921 1.39948 1.50012 1.98819 2.36441 2.69303 3.07175 3.13471 3.34854 3.78140 3.98330 4.28837 4.41669 4.45576 4.60513 4.73647 4.75331 4.94738 4.99974 5.42875 5.44927 5.65973 6.03449 6.15686 6.60222 6.86920 6.94670 7.09421 7.38656 8.82815 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.032246 B = 0.008516 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.128288 B = 3287.078126 C = 3677.771181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.317 6.317 3 C 0.273 3.727 4 N -0.515 5.515 5 C 0.185 3.815 6 C 0.254 3.746 7 H 0.041 0.959 8 N -0.837 5.837 9 C -0.548 4.548 10 H 0.042 0.958 11 C 0.026 3.974 12 N -0.913 5.913 13 Si 0.956 3.044 14 H -0.279 1.279 15 H -0.278 1.278 16 H -0.277 1.277 17 C -0.183 4.183 18 C -0.057 4.057 19 C -0.005 4.005 20 F -0.133 7.133 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.130 0.870 24 H 0.349 0.651 25 H 0.319 0.681 26 H 0.268 0.732 27 H 0.164 0.836 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 -8.010 0.839 9.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.225 6.225 3 C 0.092 3.908 4 N -0.238 5.238 5 C 0.049 3.951 6 C 0.143 3.857 7 H 0.059 0.941 8 N -0.366 5.366 9 C -0.588 4.588 10 H 0.060 0.940 11 C -0.174 4.174 12 N -0.553 5.553 13 Si 0.782 3.218 14 H -0.204 1.204 15 H -0.204 1.204 16 H -0.203 1.203 17 C -0.203 4.203 18 C -0.082 4.082 19 C -0.027 4.027 20 F -0.111 7.111 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.148 0.852 24 H 0.164 0.836 25 H 0.128 0.872 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.563 -8.210 1.242 9.995 hybrid contribution -1.000 0.113 -1.406 1.729 sum 4.563 -8.097 -0.163 9.296 Atomic orbital electron populations 1.23016 0.75776 1.04519 1.02070 1.86220 1.24429 1.23691 1.88137 1.20234 0.88654 0.86341 0.95550 1.67216 1.40065 0.98241 1.18289 1.21609 0.93084 0.91626 0.88819 1.17881 0.91426 0.88142 0.88260 0.94070 1.59426 1.33832 1.07773 1.35604 1.21899 1.18580 1.05337 1.12941 0.94002 1.25611 0.98615 0.94556 0.98649 1.69808 1.37527 1.09582 1.38386 0.85547 0.78877 0.77723 0.79641 1.20379 1.20416 1.20276 1.22032 0.92878 1.00888 1.04503 1.21764 1.03017 0.88263 0.95187 1.17734 0.86243 0.84279 1.14434 1.91460 1.75971 1.48924 1.94793 0.92673 0.93477 0.85173 0.83560 0.87217 0.92217 0.81834 0.79129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.20 10.38 113.37 1.18 2.38 15 2 O -0.32 -11.23 10.35 -90.42 -0.94 -12.16 15 3 C 0.27 10.49 7.50 84.84 0.64 11.13 15 4 N -0.51 -21.87 8.75 -296.82 -2.60 -24.47 15 5 C 0.19 7.90 5.68 42.50 0.24 8.14 15 6 C 0.25 12.33 3.03 43.42 0.13 12.46 15 7 H 0.04 2.11 7.86 -2.39 -0.02 2.09 15 8 N -0.84 -39.78 9.18 -174.96 -1.61 -41.39 15 9 C -0.55 -29.16 8.52 25.60 0.22 -28.94 15 10 H 0.04 2.33 7.68 -2.91 -0.02 2.30 15 11 C 0.03 1.37 5.38 84.65 0.46 1.83 15 12 N -0.91 -48.84 11.54 21.45 0.25 -48.59 15 13 Si 0.96 42.49 29.54 68.60 2.03 44.51 15 14 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 15 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 17 C -0.18 -6.21 9.70 22.36 0.22 -5.99 15 18 C -0.06 -1.63 10.16 22.48 0.23 -1.41 15 19 C 0.00 -0.16 7.35 22.55 0.17 0.01 15 20 F -0.13 -4.28 17.13 44.97 0.77 -3.51 15 21 H 0.05 1.68 8.10 -2.39 -0.02 1.66 15 22 H 0.05 1.52 8.11 -2.39 -0.02 1.50 15 23 H 0.13 2.71 8.14 -2.39 -0.02 2.69 15 24 H 0.35 17.56 7.08 -89.69 -0.63 16.93 15 25 H 0.32 15.12 8.92 -89.70 -0.80 14.32 15 26 H 0.27 13.64 8.31 -92.71 -0.77 12.87 15 27 H 0.16 4.77 7.94 -2.91 -0.02 4.75 15 28 H 0.19 3.69 8.06 -2.91 -0.02 3.67 15 Total: -1.00 -58.89 255.71 1.15 -57.75 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -0.23 Total: 28.25 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 3.47 Total: -0.40 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -3.96 Total: -114.45 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.94 Total: -12.16 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.77 Total: -3.51 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -58.89 1.15 -57.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393371.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.156 kcal (2) G-P(sol) polarization free energy of solvation -58.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds