Wall clock time and date at job start Mon Mar 30 2020 03:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47213 * 120.00352 * 2 1 3 5 5 H 1.07998 * 119.99571 * 119.99995 * 4 2 1 6 6 C 1.37874 * 119.99909 * 299.99743 * 4 2 1 7 7 N 1.31515 * 119.99912 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99930 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47201 * 89.99866 * 8 6 4 10 10 H 1.48499 * 109.47026 * 209.99902 * 8 6 4 11 11 H 1.48499 * 109.47021 * 329.99939 * 8 6 4 12 12 C 1.50697 * 109.46644 * 240.00324 * 2 1 3 13 13 C 1.38272 * 119.98833 * 294.26939 * 12 2 1 14 14 C 1.38227 * 120.04920 * 179.77132 * 13 12 2 15 15 C 1.38217 * 120.02688 * 0.50618 * 14 13 12 16 16 C 1.38437 * 119.97592 * 359.74915 * 15 14 13 17 17 F 1.35099 * 120.02923 * 179.97438 * 16 15 14 18 18 C 1.38179 * 119.98857 * 114.54707 * 12 2 1 19 19 C 1.50700 * 120.01134 * 0.02562 * 18 12 2 20 20 F 1.39896 * 109.47313 * 84.66692 * 19 18 12 21 21 H 1.08996 * 109.47555 * 59.99566 * 1 2 3 22 22 H 1.09000 * 109.47559 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47064 * 299.99473 * 1 2 3 24 24 H 0.97007 * 119.99791 * 180.02562 * 7 6 4 25 25 H 1.07992 * 119.97125 * 0.02562 * 13 12 2 26 26 H 1.08004 * 119.98298 * 180.25570 * 14 13 12 27 27 H 1.07997 * 120.01457 * 179.72277 * 15 14 13 28 28 H 1.08996 * 109.47187 * 204.66855 * 19 18 12 29 29 H 1.09007 * 109.46877 * 324.66917 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4117 10 1 1.3446 -0.9491 5.1122 11 1 2.4881 -2.5655 3.7120 12 6 2.0322 -0.7103 -1.2305 13 6 1.7984 -2.0637 -1.3911 14 6 2.2544 -2.7155 -2.5215 15 6 2.9538 -2.0173 -3.4878 16 6 3.1930 -0.6634 -3.3257 17 9 3.8769 0.0201 -4.2692 18 6 2.7312 -0.0102 -2.1952 19 6 2.9918 1.4633 -2.0167 20 9 4.1393 1.6428 -1.2370 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 0.7089 1.1611 3.4845 25 1 1.2556 -2.6109 -0.6347 26 1 2.0676 -3.7718 -2.6478 27 1 3.3138 -2.5277 -4.3688 28 1 3.1390 1.9270 -2.9921 29 1 2.1388 1.9255 -1.5196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260532020.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:53 Heat of formation + Delta-G solvation = -85.864091 kcal Electronic energy + Delta-G solvation = -15554.816773 eV Core-core repulsion = 12692.196426 eV Total energy + Delta-G solvation = -2862.620347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.61033 -46.99203 -38.81233 -34.45750 -32.02320 -30.98797 -28.39414 -25.93651 -25.17933 -22.97153 -21.18539 -19.79440 -17.01331 -16.54675 -16.04953 -15.59257 -15.49218 -14.86362 -14.66067 -14.58446 -14.08093 -13.33288 -12.96442 -12.36201 -12.04473 -11.97996 -11.56918 -11.28846 -10.96207 -10.83710 -10.60941 -10.43725 -10.37477 -10.15153 -9.52698 -9.05998 -8.44987 -8.35646 -8.00490 -6.07207 -4.13681 1.58149 1.77106 3.28517 3.35151 3.37897 4.08251 4.39930 4.62717 4.92773 5.09506 5.23026 5.28403 5.53657 5.60881 5.79239 5.94192 6.12131 6.36551 6.51273 6.54038 6.70868 6.79333 6.97854 7.04957 7.10863 7.42866 7.62879 7.82507 7.99538 8.28814 8.87313 9.51054 10.99007 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.031345 B = 0.009192 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.069395 B = 3045.277689 C = 3353.431656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.017 3.983 13 C -0.122 4.122 14 C -0.089 4.089 15 C -0.184 4.184 16 C 0.109 3.891 17 F -0.147 7.147 18 C -0.184 4.184 19 C 0.112 3.888 20 F -0.207 7.207 21 H 0.009 0.991 22 H 0.031 0.969 23 H 0.089 0.911 24 H 0.262 0.738 25 H 0.134 0.866 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.072 0.928 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -2.885 -9.156 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 H 0.062 0.938 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.017 3.983 13 C -0.140 4.140 14 C -0.107 4.107 15 C -0.203 4.203 16 C 0.090 3.910 17 F -0.125 7.125 18 C -0.185 4.185 19 C 0.057 3.943 20 F -0.188 7.188 21 H 0.028 0.972 22 H 0.050 0.950 23 H 0.108 0.892 24 H 0.072 0.928 25 H 0.151 0.849 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.090 0.910 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.730 -2.729 -9.032 9.464 hybrid contribution 0.567 -0.408 0.677 0.973 sum 1.297 -3.137 -8.355 9.018 Atomic orbital electron populations 1.21805 0.97084 0.99636 1.00545 1.18072 0.93108 0.96089 0.88215 0.93838 1.21037 1.31431 1.12554 0.89622 0.92292 1.24933 0.94889 0.94976 0.98986 1.69869 1.36461 1.22801 1.23594 0.86542 0.78681 0.80050 0.82479 1.20578 1.21180 1.19847 1.20543 0.89885 0.93684 0.94202 1.21210 1.00924 0.94568 0.97329 1.21019 0.96690 0.99524 0.93478 1.20854 1.05121 0.92446 1.01895 1.17517 0.95863 0.90417 0.87232 1.91427 1.77617 1.80041 1.63455 1.20193 1.05328 0.97233 0.95769 1.20602 0.86424 0.92544 0.94708 1.92804 1.52495 1.96168 1.77330 0.97152 0.95003 0.89250 0.92826 0.84857 0.85727 0.85621 0.90969 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.84 37.16 0.33 -2.71 15 2 C 0.06 1.52 2.21 -92.92 -0.21 1.32 15 3 H 0.04 1.12 5.70 -51.93 -0.30 0.83 15 4 C -0.51 -13.50 8.09 -34.44 -0.28 -13.78 15 5 H 0.06 1.57 7.43 -52.49 -0.39 1.18 15 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 15 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 15 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 12 C 0.02 0.36 4.75 -104.63 -0.50 -0.14 15 13 C -0.12 -2.29 8.59 -39.57 -0.34 -2.63 15 14 C -0.09 -1.39 10.04 -39.59 -0.40 -1.79 15 15 C -0.18 -2.90 10.03 -39.52 -0.40 -3.30 15 16 C 0.11 1.94 7.24 -39.42 -0.29 1.66 15 17 F -0.15 -2.51 16.39 2.25 0.04 -2.48 15 18 C -0.18 -3.61 5.60 -104.55 -0.59 -4.20 15 19 C 0.11 2.08 6.69 36.01 0.24 2.32 15 20 F -0.21 -4.42 17.34 2.25 0.04 -4.38 15 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 15 22 H 0.03 0.68 7.75 -51.93 -0.40 0.28 15 23 H 0.09 2.25 6.07 -51.92 -0.32 1.94 15 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 25 H 0.13 2.48 7.76 -52.49 -0.41 2.08 15 26 H 0.12 1.53 8.06 -52.48 -0.42 1.11 15 27 H 0.13 1.62 8.06 -52.49 -0.42 1.20 15 28 H 0.07 1.13 7.49 -51.93 -0.39 0.74 15 29 H 0.09 1.70 6.51 -51.93 -0.34 1.36 15 LS Contribution 254.58 15.07 3.84 3.84 Total: -1.00 -28.02 254.58 -5.93 -33.95 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -2.94 Total: -1.24 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -2.51 Total: -21.63 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.63 Total: -23.97 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.08 Total: -6.86 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.02 -5.93 -33.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260532020.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.914 kcal (2) G-P(sol) polarization free energy of solvation -28.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds