Wall clock time and date at job start Mon Mar 30 2020 03:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47213 * 120.00352 * 2 1 3 5 5 H 1.07998 * 119.99571 * 119.99995 * 4 2 1 6 6 C 1.37874 * 119.99909 * 299.99743 * 4 2 1 7 7 N 1.31515 * 119.99912 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99930 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47201 * 89.99866 * 8 6 4 10 10 H 1.48499 * 109.47026 * 209.99902 * 8 6 4 11 11 H 1.48499 * 109.47021 * 329.99939 * 8 6 4 12 12 C 1.50697 * 109.46644 * 240.00324 * 2 1 3 13 13 C 1.38272 * 119.98833 * 294.26939 * 12 2 1 14 14 C 1.38227 * 120.04920 * 179.77132 * 13 12 2 15 15 C 1.38217 * 120.02688 * 0.50618 * 14 13 12 16 16 C 1.38437 * 119.97592 * 359.74915 * 15 14 13 17 17 F 1.35099 * 120.02923 * 179.97438 * 16 15 14 18 18 C 1.38179 * 119.98857 * 114.54707 * 12 2 1 19 19 C 1.50700 * 120.01134 * 0.02562 * 18 12 2 20 20 F 1.39896 * 109.47313 * 84.66692 * 19 18 12 21 21 H 1.08996 * 109.47555 * 59.99566 * 1 2 3 22 22 H 1.09000 * 109.47559 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47064 * 299.99473 * 1 2 3 24 24 H 0.97007 * 119.99791 * 180.02562 * 7 6 4 25 25 H 1.07992 * 119.97125 * 0.02562 * 13 12 2 26 26 H 1.08004 * 119.98298 * 180.25570 * 14 13 12 27 27 H 1.07997 * 120.01457 * 179.72277 * 15 14 13 28 28 H 1.08996 * 109.47187 * 204.66855 * 19 18 12 29 29 H 1.09007 * 109.46877 * 324.66917 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4117 10 1 1.3446 -0.9491 5.1122 11 1 2.4881 -2.5655 3.7120 12 6 2.0322 -0.7103 -1.2305 13 6 1.7984 -2.0637 -1.3911 14 6 2.2544 -2.7155 -2.5215 15 6 2.9538 -2.0173 -3.4878 16 6 3.1930 -0.6634 -3.3257 17 9 3.8769 0.0201 -4.2692 18 6 2.7312 -0.0102 -2.1952 19 6 2.9918 1.4633 -2.0167 20 9 4.1393 1.6428 -1.2370 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 0.7089 1.1611 3.4845 25 1 1.2556 -2.6109 -0.6347 26 1 2.0676 -3.7718 -2.6478 27 1 3.3138 -2.5277 -4.3688 28 1 3.1390 1.9270 -2.9921 29 1 2.1388 1.9255 -1.5196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260532020.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:53 Heat of formation + Delta-G solvation = -99.807958 kcal Electronic energy + Delta-G solvation = -15555.421424 eV Core-core repulsion = 12692.196426 eV Total energy + Delta-G solvation = -2863.224998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.96032 -48.59259 -40.25738 -36.23820 -33.67167 -32.61464 -29.96591 -27.40377 -27.15520 -24.56236 -22.62111 -21.42706 -18.68962 -18.02638 -17.64283 -17.11082 -17.05418 -16.53754 -16.29932 -16.06473 -15.47459 -14.90628 -14.74497 -13.96580 -13.66794 -13.42640 -13.22123 -12.94129 -12.80205 -12.58706 -12.28303 -12.14378 -12.04172 -11.88207 -11.23350 -10.96360 -10.44543 -9.79314 -9.45710 -8.10789 -6.23394 0.19668 0.38281 1.41830 1.43726 1.52664 2.42436 2.70769 3.17856 3.27268 3.52041 3.75698 3.90250 4.13623 4.25693 4.46073 4.57381 4.62668 4.83216 4.90836 5.02266 5.18662 5.23413 5.27773 5.42733 5.49473 5.65599 5.97773 5.99833 6.09476 6.32917 6.83669 7.43946 8.94254 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.031345 B = 0.009192 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.069395 B = 3045.277689 C = 3353.431656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.064 3.936 3 H 0.016 0.984 4 C -0.521 4.521 5 H 0.053 0.947 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.265 1.265 12 C -0.012 4.012 13 C -0.135 4.135 14 C -0.073 4.073 15 C -0.169 4.169 16 C 0.102 3.898 17 F -0.143 7.143 18 C -0.201 4.201 19 C 0.106 3.894 20 F -0.226 7.226 21 H 0.027 0.973 22 H 0.037 0.963 23 H 0.061 0.939 24 H 0.262 0.738 25 H 0.128 0.872 26 H 0.168 0.832 27 H 0.165 0.835 28 H 0.102 0.898 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -4.748 -10.578 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.046 3.954 3 H 0.034 0.966 4 C -0.559 4.559 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.778 3.222 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.189 1.189 12 C -0.012 4.012 13 C -0.153 4.153 14 C -0.090 4.090 15 C -0.188 4.188 16 C 0.083 3.917 17 F -0.122 7.122 18 C -0.202 4.202 19 C 0.052 3.948 20 F -0.208 7.208 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.185 0.815 27 H 0.182 0.818 28 H 0.120 0.880 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.188 -4.597 -10.463 11.490 hybrid contribution 0.438 0.157 1.028 1.128 sum 1.626 -4.440 -9.436 10.554 Atomic orbital electron populations 1.21635 0.96658 0.99746 0.99986 1.17892 0.93547 0.94727 0.89274 0.96630 1.21349 1.31125 1.12450 0.90991 0.92858 1.25667 0.95217 0.95708 1.01695 1.69994 1.37462 1.23959 1.24043 0.85639 0.77902 0.79344 0.79312 1.20819 1.20672 1.18946 1.20299 0.92221 0.94868 0.93827 1.21285 1.01566 0.93706 0.98730 1.21410 0.94666 1.01347 0.91598 1.21316 1.03282 0.91395 1.02759 1.17650 0.95930 0.91356 0.86776 1.91436 1.77486 1.80179 1.63061 1.20251 1.05897 0.97519 0.96544 1.20785 0.85454 0.92918 0.95649 1.92754 1.53569 1.96297 1.78133 0.95354 0.94417 0.92005 0.92899 0.85375 0.81461 0.81791 0.87983 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.84 71.98 0.64 -5.07 15 2 C 0.06 3.14 2.21 -12.29 -0.03 3.12 15 3 H 0.02 0.85 5.70 -2.39 -0.01 0.83 15 4 C -0.52 -28.16 8.09 25.60 0.21 -27.95 15 5 H 0.05 2.86 7.43 -2.91 -0.02 2.84 15 6 C 0.02 0.87 5.30 84.65 0.45 1.32 15 7 N -0.92 -51.93 11.32 21.45 0.24 -51.69 15 8 Si 0.95 43.27 29.54 68.60 2.03 45.29 15 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 12 C -0.01 -0.50 4.75 -19.87 -0.09 -0.59 15 13 C -0.13 -4.83 8.59 22.28 0.19 -4.64 15 14 C -0.07 -1.98 10.04 22.26 0.22 -1.76 15 15 C -0.17 -4.59 10.03 22.31 0.22 -4.36 15 16 C 0.10 3.38 7.24 22.38 0.16 3.54 15 17 F -0.14 -4.51 16.39 44.97 0.74 -3.78 15 18 C -0.20 -7.73 5.60 -19.82 -0.11 -7.84 15 19 C 0.11 3.97 6.69 71.24 0.48 4.44 15 20 F -0.23 -9.85 17.34 44.97 0.78 -9.08 15 21 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.04 1.64 7.75 -2.39 -0.02 1.62 15 23 H 0.06 3.21 6.07 -2.38 -0.01 3.19 15 24 H 0.26 14.17 8.31 -92.70 -0.77 13.40 15 25 H 0.13 4.64 7.76 -2.91 -0.02 4.62 15 26 H 0.17 3.15 8.06 -2.91 -0.02 3.13 15 27 H 0.16 3.23 8.06 -2.91 -0.02 3.21 15 28 H 0.10 3.11 7.49 -2.39 -0.02 3.09 15 29 H 0.09 3.28 6.51 -2.38 -0.02 3.26 15 Total: -1.00 -60.73 254.58 7.28 -53.45 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.16 Total: 5.59 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 2.34 Total: -39.79 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.24 Total: -51.69 kcal Atomic # 9 Polarization: -14.37 SS G_CDS: 1.52 Total: -12.85 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -60.73 7.28 -53.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260532020.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.356 kcal (2) G-P(sol) polarization free energy of solvation -60.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds