Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35726 * 116.99825 * 2 1 4 4 C 1.38888 * 119.65586 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.14053 * 179.97438 * 4 3 2 6 6 C 1.39001 * 118.46407 * 359.73524 * 5 4 3 7 7 F 1.35103 * 120.38232 * 180.26020 * 6 5 4 8 8 C 1.38251 * 119.23690 * 0.53017 * 6 5 4 9 9 C 1.50698 * 119.59912 * 179.73237 * 8 6 5 10 10 H 1.08998 * 109.47607 * 14.73273 * 9 8 6 11 11 N 1.46901 * 109.47110 * 134.72854 * 9 8 6 12 12 C 1.50702 * 109.47465 * 254.72477 * 9 8 6 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 9 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 N 1.31974 * 120.79964 * 359.45734 * 8 6 5 21 21 H 1.09002 * 109.47225 * 59.99723 * 1 2 3 22 22 H 1.08996 * 109.47514 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47098 * 299.99701 * 1 2 3 24 24 H 1.08007 * 120.43315 * 359.95776 * 4 3 2 25 25 H 1.08003 * 120.77166 * 179.97438 * 5 4 3 26 26 H 1.00908 * 111.00077 * 296.04383 * 11 9 8 27 27 H 1.00905 * 111.00224 * 59.99512 * 11 9 8 28 28 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4326 1.2737 -0.0005 5 6 4.0496 2.5123 -0.0011 6 6 3.2513 3.6502 -0.0067 7 9 3.8130 4.8789 -0.0127 8 6 1.8759 3.5101 -0.0004 9 6 1.0027 4.7383 -0.0003 10 1 1.6009 5.6096 -0.2668 11 7 -0.0796 4.5697 -0.9791 12 6 0.4124 4.9350 1.3723 13 1 0.6465 4.2402 2.1653 14 6 -0.4266 6.0017 1.6155 15 7 -0.7114 6.8479 0.6500 16 14 -1.1643 6.2411 3.3150 17 1 -2.4579 5.5167 3.3995 18 1 -0.2307 5.7080 4.3395 19 1 -1.3908 7.6885 3.5569 20 7 1.3185 2.3139 0.0001 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.0223 0.3689 -0.0003 25 1 5.1266 2.5931 -0.0011 26 1 0.2879 4.5005 -1.9163 27 1 -0.6491 3.7677 -0.7540 28 1 -0.3279 6.7238 -0.2324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260543264.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = -48.344992 kcal Electronic energy + Delta-G solvation = -15605.840324 eV Core-core repulsion = 12764.766889 eV Total energy + Delta-G solvation = -2841.073435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.36433 -40.26604 -37.69066 -34.89976 -32.14070 -31.00195 -29.61458 -27.20170 -25.66973 -23.56882 -22.57690 -20.92898 -18.05570 -17.35506 -17.07295 -16.50295 -15.84133 -15.05320 -14.76212 -14.34565 -14.14090 -13.61101 -13.40524 -13.24145 -12.84152 -12.40436 -12.03122 -11.71457 -11.65181 -10.76307 -10.74821 -10.45893 -10.07100 -9.68575 -9.35075 -8.73165 -8.33964 -7.88392 -7.53987 -6.20611 -4.03041 1.38639 1.40931 3.26483 3.47980 3.51318 3.66934 3.97265 4.49495 4.59918 4.63913 5.01460 5.19227 5.38582 5.46431 5.50882 5.57289 5.84232 5.86576 6.05122 6.10627 6.23694 6.75490 6.98556 7.43220 7.88144 8.14167 8.31527 8.60165 8.75484 9.01722 9.78717 11.19867 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.025652 B = 0.009985 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.282484 B = 2803.542008 C = 3318.314370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.312 6.312 3 C 0.305 3.695 4 C -0.190 4.190 5 C -0.079 4.079 6 C 0.003 3.997 7 F -0.129 7.129 8 C 0.157 3.843 9 C 0.249 3.751 10 H 0.053 0.947 11 N -0.819 5.819 12 C -0.602 4.602 13 H 0.046 0.954 14 C 0.040 3.960 15 N -0.888 5.888 16 Si 1.069 2.931 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.284 1.284 20 N -0.504 5.504 21 H 0.058 0.942 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.142 0.858 25 H 0.146 0.854 26 H 0.299 0.701 27 H 0.337 0.663 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -10.916 -2.208 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.126 3.874 4 C -0.211 4.211 5 C -0.105 4.105 6 C -0.019 4.019 7 F -0.108 7.108 8 C 0.016 3.984 9 C 0.139 3.861 10 H 0.071 0.929 11 N -0.346 5.346 12 C -0.641 4.641 13 H 0.064 0.936 14 C -0.170 4.170 15 N -0.522 5.522 16 Si 0.898 3.102 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.210 1.210 20 N -0.227 5.227 21 H 0.077 0.923 22 H 0.110 0.890 23 H 0.081 0.919 24 H 0.159 0.841 25 H 0.164 0.836 26 H 0.109 0.891 27 H 0.150 0.850 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.963 -9.503 -1.103 10.355 hybrid contribution 2.322 -1.767 -1.028 3.094 sum 6.284 -11.271 -2.131 13.079 Atomic orbital electron populations 1.22837 0.77242 1.02384 1.03042 1.86181 1.22954 1.24573 1.88238 1.19923 0.89311 0.85086 0.93107 1.20704 0.91915 0.98379 1.10110 1.21349 1.00666 0.90705 0.97809 1.18473 0.92579 0.80783 1.10085 1.91477 1.84971 1.40058 1.94299 1.23154 0.91230 0.95156 0.88813 1.18497 0.87280 0.85859 0.94461 0.92893 1.59454 1.23871 1.48311 1.02935 1.21526 1.34733 1.14841 0.92975 0.93615 1.25627 0.94463 0.92286 1.04610 1.70526 1.41007 1.36079 1.04571 0.83566 0.75972 0.76213 0.74438 1.21534 1.21780 1.20993 1.67229 1.39661 0.97544 1.18287 0.92340 0.89023 0.91864 0.84056 0.83644 0.89074 0.85011 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 101.05 1.05 1.60 15 2 O -0.31 -4.97 10.48 -18.88 -0.20 -5.17 15 3 C 0.30 5.44 7.49 -17.14 -0.13 5.31 15 4 C -0.19 -2.92 10.04 -39.29 -0.39 -3.31 15 5 C -0.08 -1.25 10.16 -39.25 -0.40 -1.65 15 6 C 0.00 0.06 7.27 -39.29 -0.29 -0.22 15 7 F -0.13 -2.66 16.26 2.25 0.04 -2.62 15 8 C 0.16 3.47 5.66 -82.53 -0.47 3.01 15 9 C 0.25 6.28 2.48 -70.02 -0.17 6.11 15 10 H 0.05 1.44 7.11 -51.93 -0.37 1.07 15 11 N -0.82 -19.26 7.75 -6.65 -0.05 -19.31 15 12 C -0.60 -17.01 8.71 -34.44 -0.30 -17.31 15 13 H 0.05 1.33 7.74 -52.49 -0.41 0.93 15 14 C 0.04 1.15 5.39 -17.82 -0.10 1.06 15 15 N -0.89 -26.81 13.50 55.43 0.75 -26.06 15 16 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 15 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 20 N -0.50 -10.35 8.55 -9.50 -0.08 -10.43 15 21 H 0.06 0.81 8.10 -51.93 -0.42 0.39 15 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.06 0.94 8.10 -51.93 -0.42 0.52 15 24 H 0.14 1.70 8.06 -52.48 -0.42 1.28 15 25 H 0.15 1.76 8.06 -52.48 -0.42 1.33 15 26 H 0.30 6.24 9.06 -39.29 -0.36 5.89 15 27 H 0.34 7.85 8.53 -39.29 -0.34 7.52 15 28 H 0.29 8.75 6.40 -40.82 -0.26 8.48 15 LS Contribution 254.64 15.07 3.84 3.84 Total: -1.00 -31.11 254.64 -4.62 -35.73 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -2.63 Total: 8.97 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.19 Total: -5.42 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.62 Total: -55.80 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.20 Total: -5.17 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.11 -4.62 -35.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543264.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.616 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds