Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35726 * 116.99825 * 2 1 4 4 C 1.38888 * 119.65586 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.14053 * 179.97438 * 4 3 2 6 6 C 1.39001 * 118.46407 * 359.73524 * 5 4 3 7 7 F 1.35103 * 120.38232 * 180.26020 * 6 5 4 8 8 C 1.38251 * 119.23690 * 0.53017 * 6 5 4 9 9 C 1.50698 * 119.59912 * 179.73237 * 8 6 5 10 10 H 1.08998 * 109.47607 * 14.73273 * 9 8 6 11 11 N 1.46901 * 109.47110 * 134.72854 * 9 8 6 12 12 C 1.50702 * 109.47465 * 254.72477 * 9 8 6 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 9 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 N 1.31974 * 120.79964 * 359.45734 * 8 6 5 21 21 H 1.09002 * 109.47225 * 59.99723 * 1 2 3 22 22 H 1.08996 * 109.47514 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47098 * 299.99701 * 1 2 3 24 24 H 1.08007 * 120.43315 * 359.95776 * 4 3 2 25 25 H 1.08003 * 120.77166 * 179.97438 * 5 4 3 26 26 H 1.00908 * 111.00077 * 296.04383 * 11 9 8 27 27 H 1.00905 * 111.00224 * 59.99512 * 11 9 8 28 28 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4326 1.2737 -0.0005 5 6 4.0496 2.5123 -0.0011 6 6 3.2513 3.6502 -0.0067 7 9 3.8130 4.8789 -0.0127 8 6 1.8759 3.5101 -0.0004 9 6 1.0027 4.7383 -0.0003 10 1 1.6009 5.6096 -0.2668 11 7 -0.0796 4.5697 -0.9791 12 6 0.4124 4.9350 1.3723 13 1 0.6465 4.2402 2.1653 14 6 -0.4266 6.0017 1.6155 15 7 -0.7114 6.8479 0.6500 16 14 -1.1643 6.2411 3.3150 17 1 -2.4579 5.5167 3.3995 18 1 -0.2307 5.7080 4.3395 19 1 -1.3908 7.6885 3.5569 20 7 1.3185 2.3139 0.0001 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.0223 0.3689 -0.0003 25 1 5.1266 2.5931 -0.0011 26 1 0.2879 4.5005 -1.9163 27 1 -0.6491 3.7677 -0.7540 28 1 -0.3279 6.7238 -0.2324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543264.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = -72.835177 kcal Electronic energy + Delta-G solvation = -15606.902298 eV Core-core repulsion = 12764.766889 eV Total energy + Delta-G solvation = -2842.135409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.90775 -41.65978 -39.04655 -36.74991 -33.84787 -32.78358 -31.11174 -28.58264 -27.49213 -25.28634 -23.96925 -22.71667 -19.41422 -19.19086 -18.52983 -18.18418 -17.22029 -16.61989 -16.42194 -15.97480 -15.70979 -15.48714 -14.74992 -14.62836 -14.36230 -13.96088 -13.82605 -13.54692 -12.84411 -12.67617 -12.43934 -12.08940 -11.92858 -11.12657 -10.85966 -10.67779 -10.51242 -9.50200 -9.28923 -8.44821 -6.29972 -0.06613 0.06262 1.53479 1.62408 1.79860 2.02879 2.50171 2.63651 3.05490 3.16544 3.32615 3.73993 3.87101 4.15273 4.18371 4.38442 4.43386 4.54823 4.73478 4.75453 4.83229 4.99775 5.37298 5.79580 6.06615 6.12658 6.54174 6.70507 6.76062 6.95211 7.59295 8.92529 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.025652 B = 0.009985 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.282484 B = 2803.542008 C = 3318.314370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.307 6.307 3 C 0.292 3.708 4 C -0.167 4.167 5 C -0.059 4.059 6 C -0.019 4.019 7 F -0.141 7.141 8 C 0.124 3.876 9 C 0.252 3.748 10 H 0.023 0.977 11 N -0.823 5.823 12 C -0.610 4.610 13 H 0.030 0.970 14 C -0.008 4.008 15 N -0.914 5.914 16 Si 1.114 2.886 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.524 5.524 21 H 0.051 0.949 22 H 0.133 0.867 23 H 0.044 0.956 24 H 0.187 0.813 25 H 0.191 0.809 26 H 0.314 0.686 27 H 0.336 0.664 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.156 -13.155 -1.746 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.215 6.215 3 C 0.112 3.888 4 C -0.187 4.187 5 C -0.085 4.085 6 C -0.042 4.042 7 F -0.120 7.120 8 C -0.015 4.015 9 C 0.142 3.858 10 H 0.041 0.959 11 N -0.350 5.350 12 C -0.649 4.649 13 H 0.048 0.952 14 C -0.212 4.212 15 N -0.548 5.548 16 Si 0.937 3.063 17 H -0.201 1.201 18 H -0.205 1.205 19 H -0.205 1.205 20 N -0.248 5.248 21 H 0.070 0.930 22 H 0.151 0.849 23 H 0.063 0.937 24 H 0.205 0.795 25 H 0.208 0.792 26 H 0.125 0.875 27 H 0.150 0.850 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.109 -11.752 -0.654 12.832 hybrid contribution 2.029 -1.236 -1.227 2.674 sum 7.138 -12.989 -1.881 14.940 Atomic orbital electron populations 1.23021 0.76162 1.04700 1.01792 1.86207 1.23982 1.23336 1.87942 1.20381 0.90599 0.84853 0.92966 1.21252 0.91051 0.99838 1.06577 1.21794 1.02475 0.89011 0.95221 1.18739 0.92371 0.81700 1.11363 1.91441 1.84931 1.41108 1.94555 1.22494 0.91935 0.94612 0.92495 1.18051 0.87594 0.86906 0.93283 0.95935 1.59238 1.23870 1.48369 1.03529 1.21762 1.34612 1.14284 0.94245 0.95174 1.26998 0.94747 0.92040 1.07383 1.70641 1.42444 1.37152 1.04603 0.82978 0.76013 0.76515 0.70787 1.20135 1.20517 1.20545 1.67034 1.40879 0.97797 1.19050 0.93002 0.84920 0.93719 0.79549 0.79166 0.87544 0.85050 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.38 113.37 1.18 2.15 15 2 O -0.31 -8.96 10.48 -90.49 -0.95 -9.91 15 3 C 0.29 9.75 7.49 84.79 0.63 10.39 15 4 C -0.17 -4.42 10.04 22.46 0.23 -4.19 15 5 C -0.06 -1.66 10.16 22.49 0.23 -1.43 15 6 C -0.02 -0.75 7.27 22.46 0.16 -0.59 15 7 F -0.14 -5.87 16.26 44.97 0.73 -5.14 15 8 C 0.12 5.55 5.66 42.54 0.24 5.79 15 9 C 0.25 13.19 2.48 43.42 0.11 13.30 15 10 H 0.02 1.31 7.11 -2.39 -0.02 1.29 15 11 N -0.82 -40.03 7.75 -174.95 -1.36 -41.39 15 12 C -0.61 -35.50 8.71 25.60 0.22 -35.27 15 13 H 0.03 1.80 7.74 -2.91 -0.02 1.77 15 14 C -0.01 -0.45 5.39 84.65 0.46 0.01 15 15 N -0.91 -56.58 13.50 21.45 0.29 -56.29 15 16 Si 1.11 51.90 29.90 68.60 2.05 53.95 15 17 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 20 N -0.52 -21.34 8.55 -296.83 -2.54 -23.88 15 21 H 0.05 1.38 8.10 -2.39 -0.02 1.36 15 22 H 0.13 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.04 1.30 8.10 -2.39 -0.02 1.28 15 24 H 0.19 3.29 8.06 -2.91 -0.02 3.27 15 25 H 0.19 3.57 8.06 -2.91 -0.02 3.55 15 26 H 0.31 13.54 9.06 -89.69 -0.81 12.73 15 27 H 0.34 16.20 8.53 -89.69 -0.77 15.43 15 28 H 0.28 17.44 6.40 -92.70 -0.59 16.84 15 Total: -1.00 -69.42 254.64 1.49 -67.93 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.20 Total: 24.60 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 3.46 Total: -9.87 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -3.60 Total: -121.55 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.95 Total: -9.91 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.73 Total: -5.14 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.95 kcal Total: -69.42 1.49 -67.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543264.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.906 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds