Wall clock time and date at job start Mon Mar 30 2020 03:37:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31523 * 1
3 3 Si 1.86800 * 119.99688 * 2 1
4 4 H 1.48509 * 109.46911 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47313 * 299.99969 * 3 2 1
6 6 H 1.48501 * 109.46833 * 60.00417 * 3 2 1
7 7 C 1.38681 * 120.00166 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99737 * 179.72404 * 7 2 1
9 9 O 1.34844 * 119.99996 * 359.97438 * 7 2 1
10 10 C 1.35109 * 116.99915 * 179.72747 * 9 7 2
11 11 N 1.28899 * 125.85448 * 359.69651 * 10 9 7
12 12 O 1.41576 * 112.93526 * 180.10450 * 11 10 9
13 13 C 1.43427 * 107.48296 * 343.69025 * 12 11 10
14 14 C 1.51851 * 125.84718 * 179.97438 * 10 9 7
15 15 C 1.52266 * 110.97408 * 142.33688 * 13 12 11
16 16 C 1.53188 * 109.36515 * 68.13783 * 15 13 12
17 17 N 1.46858 * 109.42647 * 57.88892 * 16 15 13
18 18 C 1.46860 * 111.33575 * 297.68015 * 17 16 15
19 19 C 1.52277 * 110.95324 * 266.24304 * 13 12 11
20 20 H 0.96995 * 120.00183 * 0.02562 * 1 2 3
21 21 H 1.08994 * 110.82715 * 312.98342 * 14 10 9
22 22 H 1.09004 * 110.82484 * 76.35226 * 14 10 9
23 23 H 1.09000 * 109.49123 * 188.10105 * 15 13 12
24 24 H 1.09002 * 109.49258 * 308.17127 * 15 13 12
25 25 H 1.09002 * 109.47902 * 297.90865 * 16 15 13
26 26 H 1.08998 * 109.48110 * 177.87732 * 16 15 13
27 27 H 1.00901 * 111.00029 * 173.48855 * 17 16 15
28 28 H 1.08994 * 109.48693 * 302.35370 * 18 17 16
29 29 H 1.08997 * 109.48499 * 182.31377 * 18 17 16
30 30 H 1.08990 * 109.49074 * 51.83239 * 19 13 12
31 31 H 1.08999 * 109.48562 * 171.88313 * 19 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3965 -1.2125
6 1 1.8904 2.3964 1.2126
7 6 2.0087 -1.2010 -0.0005
8 1 3.0886 -1.2009 -0.0050
9 8 1.3345 -2.3688 -0.0005
10 6 2.0704 -3.5019 -0.0068
11 7 3.3577 -3.5660 -0.0183
12 8 3.8438 -4.8957 -0.0247
13 6 2.7621 -5.7518 0.3678
14 6 1.5225 -4.9181 -0.0075
15 6 2.7871 -7.0563 -0.4172
16 6 4.0123 -7.8762 -0.0009
17 7 3.9645 -8.1259 1.4455
18 6 4.0187 -6.8710 2.2064
19 6 2.7934 -6.0164 1.8671
20 1 -0.4850 0.8400 -0.0004
21 1 0.7385 -5.0307 0.7414
22 1 1.1536 -5.1904 -0.9964
23 1 1.8809 -7.6245 -0.2072
24 1 2.8409 -6.8380 -1.4838
25 1 4.9195 -7.3233 -0.2445
26 1 4.0117 -8.8269 -0.5341
27 1 4.7027 -8.7527 1.7288
28 1 4.9256 -6.3260 1.9447
29 1 4.0229 -7.0927 3.2736
30 1 2.8514 -5.0688 2.4024
31 1 1.8874 -6.5458 2.1619
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260770883.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:51
Heat of formation + Delta-G solvation = -9.265144 kcal
Electronic energy + Delta-G solvation = -15937.567596 eV
Core-core repulsion = 13221.649095 eV
Total energy + Delta-G solvation = -2715.918500 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.110 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.11391 -37.82625 -36.34595 -32.42019 -31.75461 -30.87916 -30.60890 -26.89112
-25.28483 -23.09406 -22.08422 -20.50542 -19.40824 -17.53952 -16.70594 -15.97267
-15.33736 -14.79753 -14.55062 -14.36445 -14.17735 -13.51898 -13.37672 -13.16047
-12.57589 -12.34945 -11.81633 -11.72822 -11.65267 -11.28112 -11.05073 -11.04212
-10.48926 -10.26800 -10.18814 -10.12439 -9.20599 -8.88402 -8.44349 -7.91830
-6.47201 -4.13217 2.98562 3.16082 3.23906 3.26542 3.76517 4.09902
4.27393 4.49763 4.86308 4.97228 5.00702 5.05459 5.23965 5.30804
5.50895 5.62634 5.70452 5.74130 5.84110 5.90017 6.04587 6.07139
6.20188 6.31670 6.50808 6.67903 7.02054 7.36024 7.37439 7.98111
8.60929 9.01009 9.59536 10.70455
Molecular weight = 226.11amu
Principal moments of inertia in cm(-1)
A = 0.060001 B = 0.006301 C = 0.006148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 466.545939 B = 4442.934827 C = 4553.368562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.040 3.960
3 Si 0.947 3.053
4 H -0.264 1.264
5 H -0.276 1.276
6 H -0.276 1.276
7 C -0.387 4.387
8 H 0.099 0.901
9 O -0.157 6.157
10 C 0.244 3.756
11 N -0.397 5.397
12 O -0.202 6.202
13 C 0.076 3.924
14 C -0.117 4.117
15 C -0.102 4.102
16 C 0.061 3.939
17 N -0.692 5.692
18 C 0.063 3.937
19 C -0.121 4.121
20 H 0.270 0.730
21 H 0.096 0.904
22 H 0.097 0.903
23 H 0.081 0.919
24 H 0.074 0.926
25 H 0.039 0.961
26 H 0.073 0.927
27 H 0.339 0.661
28 H 0.040 0.960
29 H 0.072 0.928
30 H 0.072 0.928
31 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.298 -12.574 1.779 13.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.504 5.504
2 C -0.164 4.164
3 Si 0.771 3.229
4 H -0.188 1.188
5 H -0.201 1.201
6 H -0.201 1.201
7 C -0.464 4.464
8 H 0.117 0.883
9 O -0.049 6.049
10 C 0.022 3.978
11 N -0.180 5.180
12 O -0.217 6.217
13 C 0.035 3.965
14 C -0.157 4.157
15 C -0.141 4.141
16 C -0.069 4.069
17 N -0.323 5.323
18 C -0.066 4.066
19 C -0.160 4.160
20 H 0.080 0.920
21 H 0.115 0.885
22 H 0.115 0.885
23 H 0.099 0.901
24 H 0.093 0.907
25 H 0.057 0.943
26 H 0.091 0.909
27 H 0.157 0.843
28 H 0.058 0.942
29 H 0.090 0.910
30 H 0.091 0.909
31 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 4.097 -11.901 1.735 12.706
hybrid contribution 0.487 0.606 -0.072 0.781
sum 4.584 -11.295 1.663 12.302
Atomic orbital electron populations
1.70034 1.05927 1.27752 1.46731 1.25327 0.95944 0.98842 0.96285
0.85550 0.79421 0.79767 0.78165 1.18833 1.20104 1.20113 1.21448
0.92336 0.79603 1.53050 0.88296 1.84034 1.31165 1.10337 1.79396
1.24839 0.90131 0.89834 0.92978 1.78784 1.10688 0.94983 1.33593
1.91039 1.30419 1.11741 1.88539 1.22118 0.87474 0.92137 0.94817
1.22592 0.99739 0.89044 1.04358 1.21529 0.99227 0.93795 0.99550
1.21873 0.97517 0.99105 0.88378 1.60302 1.52615 1.14725 1.04696
1.21842 0.97663 0.89744 0.97387 1.21809 0.98937 1.00104 0.95102
0.92000 0.88527 0.88490 0.90069 0.90709 0.94279 0.90871 0.84338
0.94203 0.90955 0.90887 0.90470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.45 13.67 55.48 0.76 -24.69 16
2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16
3 Si 0.95 21.29 29.55 -169.99 -5.02 16.26 16
4 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16
5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
7 C -0.39 -11.29 9.72 30.90 0.30 -10.99 16
8 H 0.10 2.88 7.03 -52.49 -0.37 2.51 16
9 O -0.16 -4.51 9.81 1.94 0.02 -4.49 16
10 C 0.24 5.97 8.14 -12.94 -0.11 5.86 16
11 N -0.40 -9.89 11.40 32.78 0.37 -9.52 16
12 O -0.20 -4.33 11.47 -11.46 -0.13 -4.46 16
13 C 0.08 1.30 0.77 -90.82 -0.07 1.23 16
14 C -0.12 -2.18 6.16 -26.78 -0.16 -2.34 16
15 C -0.10 -1.40 5.06 -27.01 -0.14 -1.54 16
16 C 0.06 0.75 6.49 -3.75 -0.02 0.72 16
17 N -0.69 -8.23 6.83 -113.63 -0.78 -9.01 16
18 C 0.06 0.84 6.49 -3.75 -0.02 0.82 16
19 C -0.12 -1.88 5.05 -27.00 -0.14 -2.02 16
20 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16
21 H 0.10 1.63 7.87 -51.93 -0.41 1.22 16
22 H 0.10 1.63 7.89 -51.93 -0.41 1.22 16
23 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16
24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
25 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16
26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
27 H 0.34 3.25 8.90 -39.29 -0.35 2.90 16
28 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16
29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16
LS Contribution 262.29 15.07 3.95 3.95
Total: -1.00 -32.05 262.29 -5.32 -37.38
By element:
Atomic # 1 Polarization: 5.84 SS G_CDS: -4.04 Total: 1.80 kcal
Atomic # 6 Polarization: -6.78 SS G_CDS: -0.46 Total: -7.23 kcal
Atomic # 7 Polarization: -43.57 SS G_CDS: 0.36 Total: -43.22 kcal
Atomic # 8 Polarization: -8.83 SS G_CDS: -0.11 Total: -8.95 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -32.05 -5.32 -37.38 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260770883.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.112 kcal
(2) G-P(sol) polarization free energy of solvation -32.052 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.941 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.324 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.265 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds