Wall clock time and date at job start Mon Mar 30 2020 03:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99688 * 2 1 4 4 H 1.48509 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47313 * 299.99969 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00417 * 3 2 1 7 7 C 1.38681 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99737 * 179.72404 * 7 2 1 9 9 O 1.34844 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.35109 * 116.99915 * 179.72747 * 9 7 2 11 11 N 1.28899 * 125.85448 * 359.69651 * 10 9 7 12 12 O 1.41576 * 112.93526 * 180.10450 * 11 10 9 13 13 C 1.43427 * 107.48296 * 343.69025 * 12 11 10 14 14 C 1.51851 * 125.84718 * 179.97438 * 10 9 7 15 15 C 1.52266 * 110.97408 * 142.33688 * 13 12 11 16 16 C 1.53188 * 109.36515 * 68.13783 * 15 13 12 17 17 N 1.46858 * 109.42647 * 57.88892 * 16 15 13 18 18 C 1.46860 * 111.33575 * 297.68015 * 17 16 15 19 19 C 1.52277 * 110.95324 * 266.24304 * 13 12 11 20 20 H 0.96995 * 120.00183 * 0.02562 * 1 2 3 21 21 H 1.08994 * 110.82715 * 312.98342 * 14 10 9 22 22 H 1.09004 * 110.82484 * 76.35226 * 14 10 9 23 23 H 1.09000 * 109.49123 * 188.10105 * 15 13 12 24 24 H 1.09002 * 109.49258 * 308.17127 * 15 13 12 25 25 H 1.09002 * 109.47902 * 297.90865 * 16 15 13 26 26 H 1.08998 * 109.48110 * 177.87732 * 16 15 13 27 27 H 1.00901 * 111.00029 * 173.48855 * 17 16 15 28 28 H 1.08994 * 109.48693 * 302.35370 * 18 17 16 29 29 H 1.08997 * 109.48499 * 182.31377 * 18 17 16 30 30 H 1.08990 * 109.49074 * 51.83239 * 19 13 12 31 31 H 1.08999 * 109.48562 * 171.88313 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0087 -1.2010 -0.0005 8 1 3.0886 -1.2009 -0.0050 9 8 1.3345 -2.3688 -0.0005 10 6 2.0704 -3.5019 -0.0068 11 7 3.3577 -3.5660 -0.0183 12 8 3.8438 -4.8957 -0.0247 13 6 2.7621 -5.7518 0.3678 14 6 1.5225 -4.9181 -0.0075 15 6 2.7871 -7.0563 -0.4172 16 6 4.0123 -7.8762 -0.0009 17 7 3.9645 -8.1259 1.4455 18 6 4.0187 -6.8710 2.2064 19 6 2.7934 -6.0164 1.8671 20 1 -0.4850 0.8400 -0.0004 21 1 0.7385 -5.0307 0.7414 22 1 1.1536 -5.1904 -0.9964 23 1 1.8809 -7.6245 -0.2072 24 1 2.8409 -6.8380 -1.4838 25 1 4.9195 -7.3233 -0.2445 26 1 4.0117 -8.8269 -0.5341 27 1 4.7027 -8.7527 1.7288 28 1 4.9256 -6.3260 1.9447 29 1 4.0229 -7.0927 3.2736 30 1 2.8514 -5.0688 2.4024 31 1 1.8874 -6.5458 2.1619 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260770883.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:50 Heat of formation + Delta-G solvation = -35.379845 kcal Electronic energy + Delta-G solvation = -15938.700014 eV Core-core repulsion = 13221.649095 eV Total energy + Delta-G solvation = -2717.050919 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68163 -39.63176 -37.79271 -34.50515 -33.13810 -32.51383 -31.88251 -28.42075 -27.33246 -24.19865 -23.39953 -22.32435 -20.95377 -19.48535 -18.02617 -17.49320 -16.98917 -16.61230 -16.15385 -15.68938 -15.43803 -15.19397 -14.92147 -14.81821 -14.09944 -13.71147 -13.53170 -13.13813 -13.04915 -12.73657 -12.64368 -12.28434 -12.18150 -12.16575 -11.57287 -11.50713 -11.04622 -10.84218 -9.79704 -9.43988 -8.58163 -6.34553 1.15239 1.31882 1.47509 1.50698 1.98956 2.42051 2.81769 2.90143 3.27046 3.54377 3.64526 3.78303 3.82862 4.19636 4.35487 4.37483 4.45029 4.59118 4.63414 4.69750 4.80523 4.87639 4.91083 5.06395 5.09311 5.20257 5.26088 5.87813 5.98683 6.51534 6.75254 6.93804 7.53222 8.63061 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.060001 B = 0.006301 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.545939 B = 4442.934827 C = 4553.368562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.418 4.418 8 H 0.088 0.912 9 O -0.192 6.192 10 C 0.230 3.770 11 N -0.427 5.427 12 O -0.206 6.206 13 C 0.071 3.929 14 C -0.113 4.113 15 C -0.100 4.100 16 C 0.062 3.938 17 N -0.684 5.684 18 C 0.068 3.932 19 C -0.122 4.122 20 H 0.279 0.721 21 H 0.114 0.886 22 H 0.117 0.883 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.020 0.980 26 H 0.104 0.896 27 H 0.356 0.644 28 H 0.017 0.983 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.584 -13.986 1.919 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.208 4.208 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.105 0.895 9 O -0.086 6.086 10 C 0.007 3.993 11 N -0.206 5.206 12 O -0.224 6.224 13 C 0.030 3.970 14 C -0.152 4.152 15 C -0.138 4.138 16 C -0.068 4.068 17 N -0.317 5.317 18 C -0.062 4.062 19 C -0.160 4.160 20 H 0.088 0.912 21 H 0.132 0.868 22 H 0.135 0.865 23 H 0.123 0.877 24 H 0.095 0.905 25 H 0.038 0.962 26 H 0.122 0.878 27 H 0.175 0.825 28 H 0.036 0.964 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.403 -13.348 1.879 14.180 hybrid contribution 0.448 0.851 -0.104 0.968 sum 4.851 -12.497 1.775 13.522 Atomic orbital electron populations 1.70120 1.07576 1.29335 1.47647 1.26528 0.96978 1.02275 0.94999 0.84526 0.77746 0.74634 0.79206 1.18766 1.18486 1.18470 1.21635 0.92121 0.80762 1.54940 0.89459 1.84000 1.32361 1.11266 1.80991 1.25516 0.90791 0.90897 0.92069 1.78672 1.11657 0.97982 1.32262 1.90991 1.31908 1.10687 1.88833 1.22552 0.85109 0.92739 0.96556 1.22799 1.00852 0.85408 1.06149 1.21597 1.01124 0.91999 0.99102 1.21909 0.95857 1.00105 0.88909 1.60289 1.53342 1.13804 1.04277 1.21767 0.95495 0.89989 0.98938 1.21820 1.01059 0.99540 0.93560 0.91202 0.86772 0.86532 0.87671 0.90500 0.96171 0.87751 0.82466 0.96419 0.88795 0.93661 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.27 13.67 21.62 0.30 -53.97 16 2 C -0.01 -0.47 5.49 84.84 0.47 0.00 16 3 Si 1.02 43.88 29.55 68.60 2.03 45.90 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 7 C -0.42 -25.25 9.72 67.93 0.66 -24.59 16 8 H 0.09 5.30 7.03 -2.91 -0.02 5.28 16 9 O -0.19 -11.43 9.81 -15.99 -0.16 -11.59 16 10 C 0.23 11.52 8.14 88.91 0.72 12.25 16 11 N -0.43 -21.82 11.40 -165.03 -1.88 -23.70 16 12 O -0.21 -8.86 11.47 -38.73 -0.44 -9.31 16 13 C 0.07 2.33 0.77 -10.93 -0.01 2.32 16 14 C -0.11 -4.09 6.16 30.57 0.19 -3.90 16 15 C -0.10 -2.44 5.06 30.41 0.15 -2.29 16 16 C 0.06 1.32 6.49 86.37 0.56 1.88 16 17 N -0.68 -14.05 6.83 -513.40 -3.50 -17.55 16 18 C 0.07 1.69 6.49 86.38 0.56 2.25 16 19 C -0.12 -3.61 5.05 30.42 0.15 -3.45 16 20 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 21 H 0.11 3.72 7.87 -2.39 -0.02 3.70 16 22 H 0.12 3.75 7.89 -2.38 -0.02 3.73 16 23 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.02 0.51 8.02 -2.39 -0.02 0.49 16 26 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.36 5.58 8.90 -89.69 -0.80 4.78 16 28 H 0.02 0.52 8.02 -2.39 -0.02 0.50 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -71.55 262.29 0.13 -71.42 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.34 Total: 14.33 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 3.46 Total: -15.54 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -5.09 Total: -95.22 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.60 Total: -20.89 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.55 0.13 -71.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770883.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.038 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds