Wall clock time and date at job start Mon Mar 30 2020 03:37:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31523 * 1
3 3 Si 1.86800 * 119.99688 * 2 1
4 4 H 1.48509 * 109.46911 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47313 * 299.99969 * 3 2 1
6 6 H 1.48501 * 109.46833 * 60.00417 * 3 2 1
7 7 C 1.38681 * 120.00166 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99737 * 179.72404 * 7 2 1
9 9 O 1.34844 * 119.99996 * 359.97438 * 7 2 1
10 10 C 1.35109 * 116.99915 * 179.72747 * 9 7 2
11 11 N 1.28899 * 125.85448 * 359.69651 * 10 9 7
12 12 O 1.41576 * 112.93526 * 180.10450 * 11 10 9
13 13 C 1.43427 * 107.48296 * 343.69025 * 12 11 10
14 14 C 1.51851 * 125.84718 * 179.97438 * 10 9 7
15 15 C 1.52266 * 110.97408 * 142.33688 * 13 12 11
16 16 C 1.53188 * 109.36515 * 68.13783 * 15 13 12
17 17 N 1.46858 * 109.42647 * 57.88892 * 16 15 13
18 18 C 1.46860 * 111.33575 * 297.68015 * 17 16 15
19 19 C 1.52277 * 110.95324 * 266.24304 * 13 12 11
20 20 H 0.96995 * 120.00183 * 0.02562 * 1 2 3
21 21 H 1.08994 * 110.82715 * 312.98342 * 14 10 9
22 22 H 1.09004 * 110.82484 * 76.35226 * 14 10 9
23 23 H 1.09000 * 109.49123 * 188.10105 * 15 13 12
24 24 H 1.09002 * 109.49258 * 308.17127 * 15 13 12
25 25 H 1.09002 * 109.47902 * 297.90865 * 16 15 13
26 26 H 1.08998 * 109.48110 * 177.87732 * 16 15 13
27 27 H 1.00901 * 111.00029 * 173.48855 * 17 16 15
28 28 H 1.08994 * 109.48693 * 302.35370 * 18 17 16
29 29 H 1.08997 * 109.48499 * 182.31377 * 18 17 16
30 30 H 1.08990 * 109.49074 * 51.83239 * 19 13 12
31 31 H 1.08999 * 109.48562 * 171.88313 * 19 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3965 -1.2125
6 1 1.8904 2.3964 1.2126
7 6 2.0087 -1.2010 -0.0005
8 1 3.0886 -1.2009 -0.0050
9 8 1.3345 -2.3688 -0.0005
10 6 2.0704 -3.5019 -0.0068
11 7 3.3577 -3.5660 -0.0183
12 8 3.8438 -4.8957 -0.0247
13 6 2.7621 -5.7518 0.3678
14 6 1.5225 -4.9181 -0.0075
15 6 2.7871 -7.0563 -0.4172
16 6 4.0123 -7.8762 -0.0009
17 7 3.9645 -8.1259 1.4455
18 6 4.0187 -6.8710 2.2064
19 6 2.7934 -6.0164 1.8671
20 1 -0.4850 0.8400 -0.0004
21 1 0.7385 -5.0307 0.7414
22 1 1.1536 -5.1904 -0.9964
23 1 1.8809 -7.6245 -0.2072
24 1 2.8409 -6.8380 -1.4838
25 1 4.9195 -7.3233 -0.2445
26 1 4.0117 -8.8269 -0.5341
27 1 4.7027 -8.7527 1.7288
28 1 4.9256 -6.3260 1.9447
29 1 4.0229 -7.0927 3.2736
30 1 2.8514 -5.0688 2.4024
31 1 1.8874 -6.5458 2.1619
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260770883.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:50
Heat of formation + Delta-G solvation = -35.379845 kcal
Electronic energy + Delta-G solvation = -15938.700014 eV
Core-core repulsion = 13221.649095 eV
Total energy + Delta-G solvation = -2717.050919 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.110 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.68163 -39.63176 -37.79271 -34.50515 -33.13810 -32.51383 -31.88251 -28.42075
-27.33246 -24.19865 -23.39953 -22.32435 -20.95377 -19.48535 -18.02617 -17.49320
-16.98917 -16.61230 -16.15385 -15.68938 -15.43803 -15.19397 -14.92147 -14.81821
-14.09944 -13.71147 -13.53170 -13.13813 -13.04915 -12.73657 -12.64368 -12.28434
-12.18150 -12.16575 -11.57287 -11.50713 -11.04622 -10.84218 -9.79704 -9.43988
-8.58163 -6.34553 1.15239 1.31882 1.47509 1.50698 1.98956 2.42051
2.81769 2.90143 3.27046 3.54377 3.64526 3.78303 3.82862 4.19636
4.35487 4.37483 4.45029 4.59118 4.63414 4.69750 4.80523 4.87639
4.91083 5.06395 5.09311 5.20257 5.26088 5.87813 5.98683 6.51534
6.75254 6.93804 7.53222 8.63061
Molecular weight = 226.11amu
Principal moments of inertia in cm(-1)
A = 0.060001 B = 0.006301 C = 0.006148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 466.545939 B = 4442.934827 C = 4553.368562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C -0.008 4.008
3 Si 1.020 2.980
4 H -0.264 1.264
5 H -0.260 1.260
6 H -0.260 1.260
7 C -0.418 4.418
8 H 0.088 0.912
9 O -0.192 6.192
10 C 0.230 3.770
11 N -0.427 5.427
12 O -0.206 6.206
13 C 0.071 3.929
14 C -0.113 4.113
15 C -0.100 4.100
16 C 0.062 3.938
17 N -0.684 5.684
18 C 0.068 3.932
19 C -0.122 4.122
20 H 0.279 0.721
21 H 0.114 0.886
22 H 0.117 0.883
23 H 0.105 0.895
24 H 0.076 0.924
25 H 0.020 0.980
26 H 0.104 0.896
27 H 0.356 0.644
28 H 0.017 0.983
29 H 0.094 0.906
30 H 0.045 0.955
31 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.584 -13.986 1.919 14.842
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.208 4.208
3 Si 0.839 3.161
4 H -0.188 1.188
5 H -0.185 1.185
6 H -0.185 1.185
7 C -0.495 4.495
8 H 0.105 0.895
9 O -0.086 6.086
10 C 0.007 3.993
11 N -0.206 5.206
12 O -0.224 6.224
13 C 0.030 3.970
14 C -0.152 4.152
15 C -0.138 4.138
16 C -0.068 4.068
17 N -0.317 5.317
18 C -0.062 4.062
19 C -0.160 4.160
20 H 0.088 0.912
21 H 0.132 0.868
22 H 0.135 0.865
23 H 0.123 0.877
24 H 0.095 0.905
25 H 0.038 0.962
26 H 0.122 0.878
27 H 0.175 0.825
28 H 0.036 0.964
29 H 0.112 0.888
30 H 0.063 0.937
31 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 4.403 -13.348 1.879 14.180
hybrid contribution 0.448 0.851 -0.104 0.968
sum 4.851 -12.497 1.775 13.522
Atomic orbital electron populations
1.70120 1.07576 1.29335 1.47647 1.26528 0.96978 1.02275 0.94999
0.84526 0.77746 0.74634 0.79206 1.18766 1.18486 1.18470 1.21635
0.92121 0.80762 1.54940 0.89459 1.84000 1.32361 1.11266 1.80991
1.25516 0.90791 0.90897 0.92069 1.78672 1.11657 0.97982 1.32262
1.90991 1.31908 1.10687 1.88833 1.22552 0.85109 0.92739 0.96556
1.22799 1.00852 0.85408 1.06149 1.21597 1.01124 0.91999 0.99102
1.21909 0.95857 1.00105 0.88909 1.60289 1.53342 1.13804 1.04277
1.21767 0.95495 0.89989 0.98938 1.21820 1.01059 0.99540 0.93560
0.91202 0.86772 0.86532 0.87671 0.90500 0.96171 0.87751 0.82466
0.96419 0.88795 0.93661 0.88321
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -54.27 13.67 21.62 0.30 -53.97 16
2 C -0.01 -0.47 5.49 84.84 0.47 0.00 16
3 Si 1.02 43.88 29.55 68.60 2.03 45.90 16
4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16
5 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16
6 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16
7 C -0.42 -25.25 9.72 67.93 0.66 -24.59 16
8 H 0.09 5.30 7.03 -2.91 -0.02 5.28 16
9 O -0.19 -11.43 9.81 -15.99 -0.16 -11.59 16
10 C 0.23 11.52 8.14 88.91 0.72 12.25 16
11 N -0.43 -21.82 11.40 -165.03 -1.88 -23.70 16
12 O -0.21 -8.86 11.47 -38.73 -0.44 -9.31 16
13 C 0.07 2.33 0.77 -10.93 -0.01 2.32 16
14 C -0.11 -4.09 6.16 30.57 0.19 -3.90 16
15 C -0.10 -2.44 5.06 30.41 0.15 -2.29 16
16 C 0.06 1.32 6.49 86.37 0.56 1.88 16
17 N -0.68 -14.05 6.83 -513.40 -3.50 -17.55 16
18 C 0.07 1.69 6.49 86.38 0.56 2.25 16
19 C -0.12 -3.61 5.05 30.42 0.15 -3.45 16
20 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16
21 H 0.11 3.72 7.87 -2.39 -0.02 3.70 16
22 H 0.12 3.75 7.89 -2.38 -0.02 3.73 16
23 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16
24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
25 H 0.02 0.51 8.02 -2.39 -0.02 0.49 16
26 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
27 H 0.36 5.58 8.90 -89.69 -0.80 4.78 16
28 H 0.02 0.52 8.02 -2.39 -0.02 0.50 16
29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
31 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16
Total: -1.00 -71.55 262.29 0.13 -71.42
By element:
Atomic # 1 Polarization: 13.99 SS G_CDS: 0.34 Total: 14.33 kcal
Atomic # 6 Polarization: -19.00 SS G_CDS: 3.46 Total: -15.54 kcal
Atomic # 7 Polarization: -90.13 SS G_CDS: -5.09 Total: -95.22 kcal
Atomic # 8 Polarization: -20.29 SS G_CDS: -0.60 Total: -20.89 kcal
Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal
Total: -71.55 0.13 -71.42 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260770883.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.038 kcal
(2) G-P(sol) polarization free energy of solvation -71.552 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.513 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds