Wall clock time and date at job start Mon Mar 30 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76199 * 102.99738 * 2 1 4 4 C 1.39286 * 125.54746 * 180.02562 * 3 2 1 5 5 C 1.39675 * 107.50568 * 179.75783 * 4 3 2 6 6 C 1.40233 * 126.59125 * 180.22872 * 5 4 3 7 7 H 1.07998 * 120.00205 * 180.15511 * 6 5 4 8 8 C 1.40125 * 120.00021 * 0.14639 * 6 5 4 9 9 N 1.30776 * 120.00113 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00054 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47248 * 60.00076 * 10 8 6 12 12 H 1.48502 * 109.47036 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47276 * 300.00364 * 10 8 6 14 14 N 1.37542 * 106.82001 * 0.35025 * 5 4 3 15 15 C 1.46499 * 126.13805 * 179.90956 * 14 5 4 16 16 C 1.53002 * 109.46799 * 239.71661 * 15 14 5 17 17 C 1.53000 * 109.46840 * 119.71896 * 15 14 5 18 18 N 1.31762 * 125.55108 * 359.97344 * 3 2 1 19 19 H 1.09007 * 109.46806 * 299.99438 * 1 2 3 20 20 H 1.08991 * 109.47464 * 60.00113 * 1 2 3 21 21 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 22 22 H 1.08001 * 126.24902 * 359.95333 * 4 3 2 23 23 H 0.96998 * 120.00090 * 179.97438 * 9 8 6 24 24 H 1.09002 * 109.47391 * 359.71565 * 15 14 5 25 25 H 1.09002 * 109.47075 * 299.99543 * 16 15 14 26 26 H 1.08996 * 109.47407 * 60.00500 * 16 15 14 27 27 H 1.09000 * 109.46986 * 180.02562 * 16 15 14 28 28 H 1.08992 * 109.47399 * 59.99666 * 17 15 14 29 29 H 1.09004 * 109.46724 * 180.02562 * 17 15 14 30 30 H 1.09001 * 109.47194 * 299.99493 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.4967 2.2510 -0.0005 5 6 3.3739 3.6423 -0.0059 6 6 4.4220 4.5740 -0.0127 7 1 4.2042 5.6318 -0.0140 8 6 5.7518 4.1325 -0.0177 9 7 6.0156 2.8516 -0.0165 10 14 7.1480 5.3736 -0.0260 11 1 7.0581 6.2278 1.1853 12 1 8.4481 4.6560 -0.0298 13 1 7.0475 6.2235 -1.2396 14 7 2.0274 3.9230 -0.0006 15 6 1.4231 5.2576 -0.0015 16 6 0.5558 5.4255 1.2477 17 6 0.5556 5.4236 -1.2508 18 7 1.3381 2.7044 -0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 4.4205 1.6915 -0.0003 23 1 6.9362 2.5460 -0.0204 24 1 2.2094 6.0125 -0.0021 25 1 -0.2305 4.6707 1.2483 26 1 1.1738 5.3073 2.1377 27 1 0.1058 6.4183 1.2468 28 1 -0.2306 4.6688 -1.2502 29 1 0.1063 6.4168 -1.2517 30 1 1.1735 5.3040 -2.1408 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261007541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:32 Heat of formation + Delta-G solvation = 32.394306 kcal Electronic energy + Delta-G solvation = -13658.966708 eV Core-core repulsion = 11387.607568 eV Total energy + Delta-G solvation = -2271.359140 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.87950 -36.18030 -35.58114 -31.52640 -29.79372 -29.68386 -28.12975 -27.11401 -23.67763 -21.82050 -20.43351 -18.97881 -17.75280 -16.50273 -16.10320 -15.47673 -15.43170 -15.03631 -14.43001 -14.40050 -13.98340 -13.64808 -13.53390 -13.37044 -13.08216 -12.89779 -12.85765 -12.26767 -12.15334 -11.98036 -11.72172 -11.36178 -11.34749 -10.77202 -10.30993 -9.08504 -8.53531 -8.14047 -6.52850 0.81020 1.24529 1.40650 1.53644 1.56262 1.68890 2.18808 2.37116 2.58462 3.31194 3.83825 4.16016 4.24708 4.33595 4.38871 4.63496 4.69112 4.83351 4.83651 4.89026 5.01526 5.08979 5.28243 5.36854 5.45908 5.75576 5.96854 6.41362 6.55533 6.79723 7.21815 7.49914 8.37831 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.010575 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.959893 B = 2647.004696 C = 3677.895395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.087 6.087 3 C 0.048 3.952 4 C -0.368 4.368 5 C 0.235 3.765 6 C -0.476 4.476 7 H 0.087 0.913 8 C 0.032 3.968 9 N -0.816 5.816 10 Si 1.003 2.997 11 H -0.257 1.257 12 H -0.268 1.268 13 H -0.257 1.257 14 N -0.422 5.422 15 C 0.157 3.843 16 C -0.142 4.142 17 C -0.142 4.142 18 N -0.385 5.385 19 H 0.073 0.927 20 H 0.073 0.927 21 H 0.132 0.868 22 H 0.143 0.857 23 H 0.288 0.712 24 H 0.092 0.908 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 3.121 -0.001 6.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S 0.141 5.859 3 C -0.222 4.222 4 C -0.402 4.402 5 C 0.114 3.886 6 C -0.512 4.512 7 H 0.105 0.895 8 C -0.185 4.185 9 N -0.442 5.442 10 Si 0.822 3.178 11 H -0.181 1.181 12 H -0.193 1.193 13 H -0.181 1.181 14 N -0.212 5.212 15 C 0.054 3.946 16 C -0.200 4.200 17 C -0.200 4.200 18 N -0.212 5.212 19 H 0.092 0.908 20 H 0.092 0.908 21 H 0.150 0.850 22 H 0.161 0.839 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.119 0.881 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.035 2.406 0.002 6.497 hybrid contribution 0.776 1.073 -0.007 1.324 sum -5.258 3.479 -0.004 6.305 Atomic orbital electron populations 1.23390 0.92957 1.07273 1.05233 1.84729 1.08393 0.98307 1.94446 1.23690 0.96230 0.97393 1.04891 1.21826 0.95360 0.93287 1.29761 1.19086 0.83319 0.94029 0.92147 1.18966 0.90107 0.93781 1.48367 0.89484 1.26848 1.02331 0.97988 0.91291 1.69821 1.22557 1.16779 1.35069 0.84942 0.75192 0.77504 0.80131 1.18120 1.19255 1.18111 1.48906 1.03263 1.04115 1.64928 1.21170 0.96198 0.80011 0.97177 1.21991 0.99110 1.03110 0.95772 1.21994 0.99121 1.03110 0.95781 1.76940 1.19823 0.88761 1.35660 0.90812 0.90814 0.84954 0.83941 0.90146 0.88971 0.93176 0.94249 0.88081 0.93170 0.88084 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 10.37 113.37 1.18 -2.60 16 2 S -0.09 -3.65 22.76 -56.49 -1.29 -4.94 16 3 C 0.05 2.57 7.25 84.96 0.62 3.18 16 4 C -0.37 -21.61 9.73 22.87 0.22 -21.39 16 5 C 0.24 13.33 6.75 39.08 0.26 13.59 16 6 C -0.48 -25.43 9.04 23.21 0.21 -25.22 16 7 H 0.09 4.25 6.74 -2.91 -0.02 4.23 16 8 C 0.03 1.62 5.50 85.31 0.47 2.09 16 9 N -0.82 -43.53 10.29 21.86 0.23 -43.31 16 10 Si 1.00 37.40 29.56 68.60 2.03 39.42 16 11 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 12 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 13 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 14 N -0.42 -21.30 3.35 -318.95 -1.07 -22.37 16 15 C 0.16 6.12 3.67 44.99 0.17 6.28 16 16 C -0.14 -4.70 9.46 71.98 0.68 -4.02 16 17 C -0.14 -4.71 9.45 71.98 0.68 -4.03 16 18 N -0.38 -19.80 11.95 -54.87 -0.66 -20.46 16 19 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 20 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 21 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 22 H 0.14 8.83 5.72 -2.91 -0.02 8.81 16 23 H 0.29 13.83 8.29 -92.71 -0.77 13.06 16 24 H 0.09 3.51 6.70 -2.39 -0.02 3.50 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -65.95 271.18 4.85 -61.10 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 1.12 Total: 22.66 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 4.48 Total: -32.10 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.50 Total: -86.14 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.29 Total: -4.94 kcal Total: -65.95 4.85 -61.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.493 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds