Wall clock time and date at job start Mon Mar 30 2020 03:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38494 * 119.98449 * 2 1 4 4 F 1.35100 * 120.01266 * 0.27462 * 3 2 1 5 5 C 1.38404 * 119.97351 * 179.97438 * 3 2 1 6 6 C 1.38434 * 119.94904 * 0.02562 * 5 3 2 7 7 F 1.35099 * 120.01145 * 179.97438 * 6 5 3 8 8 C 1.38450 * 119.97754 * 359.97438 * 6 5 3 9 9 C 1.38189 * 119.99150 * 179.97438 * 2 1 3 10 10 C 1.50696 * 119.97246 * 0.02562 * 9 2 1 11 11 H 1.09004 * 109.47037 * 5.39418 * 10 9 2 12 12 C 1.53001 * 109.47461 * 245.39029 * 10 9 2 13 13 C 1.50700 * 109.47162 * 125.38957 * 10 9 2 14 14 H 1.08004 * 119.99838 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00235 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00112 * 0.02562 * 15 13 10 17 17 Si 1.86808 * 120.00256 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.46803 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47129 * 119.99640 * 17 15 13 20 20 H 1.48496 * 109.47115 * 240.00102 * 17 15 13 21 21 H 1.09001 * 109.46771 * 95.74983 * 1 2 3 22 22 H 1.08998 * 109.46826 * 215.74162 * 1 2 3 23 23 H 1.08997 * 109.47604 * 335.75093 * 1 2 3 24 24 H 1.08007 * 120.02066 * 179.97438 * 5 3 2 25 25 H 1.08003 * 119.98866 * 180.02562 * 8 6 5 26 26 H 1.08998 * 109.46933 * 59.99990 * 12 10 9 27 27 H 1.09003 * 109.47245 * 179.97438 * 12 10 9 28 28 H 1.08992 * 109.47074 * 300.00527 * 12 10 9 29 29 H 0.96997 * 120.00160 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1996 0.0000 4 9 1.5236 2.3695 0.0056 5 6 3.5832 1.1993 0.0005 6 6 4.2740 -0.0003 0.0005 7 9 5.6250 -0.0020 0.0005 8 6 3.5800 -1.1983 0.0005 9 6 2.1977 -1.1969 0.0005 10 6 1.4434 -2.5014 0.0005 11 1 0.3759 -2.3039 -0.0965 12 6 1.7077 -3.2434 1.3123 13 6 1.9048 -3.3485 -1.1574 14 1 2.6682 -2.9791 -1.8262 15 6 1.3531 -4.5952 -1.3624 16 7 0.4238 -5.0452 -0.5478 17 14 1.9255 -5.6455 -2.7974 18 1 2.9723 -4.9164 -3.5578 19 1 2.4854 -6.9216 -2.2844 20 1 0.7744 -5.9333 -3.6903 21 1 -0.3633 -0.1030 -1.0225 22 1 -0.3633 -0.8341 0.6003 23 1 -0.3634 0.9369 0.4220 24 1 4.1237 2.1344 0.0001 25 1 4.1189 -2.1343 0.0010 26 1 1.3739 -2.6308 2.1498 27 1 1.1617 -4.1868 1.3124 28 1 2.7751 -3.4409 1.4093 29 1 0.0354 -5.9222 -0.6923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040021.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:34 Heat of formation + Delta-G solvation = -85.236522 kcal Electronic energy + Delta-G solvation = -15392.908670 eV Core-core repulsion = 12530.315537 eV Total energy + Delta-G solvation = -2862.593133 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.63306 -48.56313 -38.83369 -34.40888 -32.17432 -31.17789 -28.58594 -26.13480 -25.22877 -23.19664 -21.29147 -19.94746 -17.26232 -17.02731 -16.06968 -15.59339 -15.30456 -14.93473 -14.89434 -14.69158 -13.90357 -13.14911 -13.12147 -12.83046 -12.28060 -11.74479 -11.67397 -11.31014 -11.20870 -11.13877 -10.95433 -10.68254 -10.36384 -10.20735 -9.62829 -9.07873 -8.46888 -8.18201 -8.00266 -6.11765 -4.18862 1.48533 1.59597 3.23856 3.32654 3.36825 3.92814 4.30342 4.36619 4.89323 5.07220 5.20656 5.25145 5.48027 5.63765 5.98850 6.10579 6.24603 6.38697 6.42369 6.57141 6.65135 6.74274 6.89034 7.02244 7.09415 7.37479 7.59581 7.80014 7.96516 8.24691 8.83273 9.46567 10.94090 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.028500 B = 0.008929 C = 0.007733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.206589 B = 3134.965842 C = 3620.087011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.116 3.884 4 F -0.141 7.141 5 C -0.215 4.215 6 C 0.112 3.888 7 F -0.142 7.142 8 C -0.148 4.148 9 C 0.021 3.979 10 C 0.066 3.934 11 H 0.051 0.949 12 C -0.134 4.134 13 C -0.512 4.512 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.058 0.942 24 H 0.136 0.864 25 H 0.143 0.857 26 H 0.011 0.989 27 H 0.089 0.911 28 H 0.030 0.970 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 8.193 1.857 8.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.097 3.903 4 F -0.119 7.119 5 C -0.235 4.235 6 C 0.093 3.907 7 F -0.121 7.121 8 C -0.167 4.167 9 C 0.020 3.980 10 C 0.048 3.952 11 H 0.069 0.931 12 C -0.191 4.191 13 C -0.550 4.550 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.154 0.846 25 H 0.161 0.839 26 H 0.030 0.970 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.443 8.082 1.886 8.651 hybrid contribution 0.561 -0.329 -0.822 1.048 sum 3.004 7.752 1.064 8.382 Atomic orbital electron populations 1.20705 0.90199 1.02537 1.03100 1.19955 0.97449 0.91191 1.05282 1.17110 0.88975 0.80872 1.03336 1.91438 1.80241 1.46200 1.94045 1.20686 0.93029 0.98232 1.11519 1.17359 0.76547 0.93977 1.02855 1.91461 1.29148 1.97436 1.94055 1.21186 0.95004 0.96833 1.03698 1.20343 0.92607 0.96196 0.88823 1.18079 0.95685 0.86312 0.95149 0.93146 1.21806 1.00009 1.02401 0.94934 1.21125 1.22355 1.00687 1.10865 0.92208 1.24934 0.94807 0.97638 0.96363 1.69876 1.26802 1.19030 1.36897 0.86506 0.78716 0.80281 0.82398 1.19682 1.20917 1.20920 0.90846 0.90003 0.92266 0.84642 0.83923 0.97022 0.89227 0.95085 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.02 36.00 0.32 -1.50 15 2 C -0.14 -2.57 5.89 -104.55 -0.62 -3.19 15 3 C 0.12 2.02 7.24 -39.43 -0.29 1.73 15 4 F -0.14 -2.31 16.38 2.25 0.04 -2.27 15 5 C -0.22 -3.56 10.01 -39.45 -0.39 -3.95 15 6 C 0.11 1.99 7.30 -39.43 -0.29 1.70 15 7 F -0.14 -2.44 17.27 2.25 0.04 -2.40 15 8 C -0.15 -2.89 8.57 -39.51 -0.34 -3.23 15 9 C 0.02 0.42 4.75 -104.65 -0.50 -0.07 15 10 C 0.07 1.53 2.21 -92.92 -0.21 1.33 15 11 H 0.05 1.22 5.71 -51.93 -0.30 0.93 15 12 C -0.13 -3.03 8.83 37.16 0.33 -2.70 15 13 C -0.51 -13.20 8.10 -34.44 -0.28 -13.48 15 14 H 0.06 1.55 7.44 -52.48 -0.39 1.16 15 15 C 0.06 1.69 5.30 -17.82 -0.09 1.59 15 16 N -0.89 -23.94 11.32 55.43 0.63 -23.31 15 17 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 15 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 21 H 0.07 1.21 8.14 -51.93 -0.42 0.78 15 22 H 0.08 1.40 6.54 -51.93 -0.34 1.06 15 23 H 0.06 0.87 7.47 -51.93 -0.39 0.48 15 24 H 0.14 1.90 8.06 -52.48 -0.42 1.48 15 25 H 0.14 2.81 7.75 -52.48 -0.41 2.40 15 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 27 H 0.09 2.23 6.07 -51.93 -0.32 1.92 15 28 H 0.03 0.67 7.72 -51.93 -0.40 0.27 15 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 254.39 15.07 3.83 3.83 Total: -1.00 -25.97 254.39 -5.77 -31.74 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -2.94 Total: -1.28 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.35 Total: -21.77 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 0.63 Total: -23.31 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.08 Total: -4.67 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.97 -5.77 -31.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040021.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.496 kcal (2) G-P(sol) polarization free energy of solvation -25.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds