Wall clock time and date at job start Mon Mar 30 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76207 * 102.99894 * 2 1 4 4 C 1.35610 * 126.01288 * 15.45263 * 3 2 1 5 5 C 1.41611 * 107.81134 * 180.27954 * 4 3 2 6 6 C 1.41411 * 126.04817 * 179.70278 * 5 4 3 7 7 H 1.08000 * 120.00002 * 6.33171 * 6 5 4 8 8 C 1.39786 * 120.00178 * 186.33662 * 6 5 4 9 9 N 1.30929 * 119.99711 * 6.57393 * 8 6 5 10 10 Si 1.86800 * 120.00279 * 186.56764 * 8 6 5 11 11 H 1.48497 * 109.46826 * 84.98959 * 10 8 6 12 12 H 1.48500 * 109.47352 * 204.99060 * 10 8 6 13 13 H 1.48504 * 109.46888 * 324.99407 * 10 8 6 14 14 N 1.32946 * 107.90419 * 359.73322 * 5 4 3 15 15 N 1.36482 * 126.01429 * 195.28167 * 3 2 1 16 16 C 1.46500 * 125.91355 * 359.97438 * 15 3 2 17 17 C 1.53008 * 109.47052 * 234.89616 * 16 15 3 18 18 C 1.52995 * 109.47307 * 114.89454 * 16 15 3 19 19 H 1.08998 * 109.46885 * 184.16598 * 1 2 3 20 20 H 1.09002 * 109.47040 * 304.16786 * 1 2 3 21 21 H 1.08997 * 109.47010 * 64.16725 * 1 2 3 22 22 H 1.07998 * 126.09374 * 0.03514 * 4 3 2 23 23 H 0.97004 * 119.99753 * 180.02562 * 9 8 6 24 24 H 1.09004 * 109.47073 * 354.89259 * 16 15 3 25 25 H 1.08994 * 109.46934 * 60.00020 * 17 16 15 26 26 H 1.09002 * 109.46823 * 180.02562 * 17 16 15 27 27 H 1.08994 * 109.46891 * 299.99738 * 17 16 15 28 28 H 1.08998 * 109.47668 * 179.97438 * 18 16 15 29 29 H 1.09007 * 109.47074 * 300.00260 * 18 16 15 30 30 H 1.09004 * 109.46731 * 59.99669 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.3595 2.7316 0.2923 5 6 2.0758 3.9469 0.1681 6 6 1.5559 5.2447 0.3804 7 1 0.5538 5.3690 0.7634 8 6 2.3390 6.3668 0.0945 9 7 3.5021 6.2219 -0.4890 10 14 1.7261 8.0729 0.5448 11 1 2.0739 8.3667 1.9583 12 1 2.3652 9.0785 -0.3416 13 1 0.2518 8.1298 0.3757 14 7 3.3234 3.6518 -0.1841 15 7 3.4285 2.2593 -0.2910 16 6 4.6355 1.5143 -0.6575 17 6 5.7778 1.8980 0.2854 18 6 5.0267 1.8535 -2.0972 19 1 -0.3633 -1.0249 0.0747 20 1 -0.3633 0.5772 0.8503 21 1 -0.3633 0.4478 -0.9250 22 1 0.3198 2.6311 0.5666 23 1 4.0457 7.0005 -0.6871 24 1 4.4410 0.4448 -0.5762 25 1 5.4990 1.6563 1.3110 26 1 6.6759 1.3440 0.0123 27 1 5.9722 2.9674 0.2041 28 1 5.9250 1.2996 -2.3698 29 1 4.2129 1.5801 -2.7689 30 1 5.2211 2.9230 -2.1784 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261082748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:29 Heat of formation + Delta-G solvation = 60.037591 kcal Electronic energy + Delta-G solvation = -13634.944732 eV Core-core repulsion = 11364.784295 eV Total energy + Delta-G solvation = -2270.160437 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.10369 -34.83289 -32.99437 -29.24863 -29.16767 -27.65626 -26.70108 -25.61049 -21.46618 -19.81019 -19.05248 -17.30526 -15.61346 -14.91362 -14.50670 -13.99607 -13.86955 -13.38568 -13.22336 -12.69467 -12.51451 -12.31847 -12.00928 -11.63358 -11.42604 -11.12802 -11.02104 -10.72554 -10.63909 -10.46939 -10.03929 -9.64506 -9.31432 -8.44624 -8.35925 -7.41821 -6.59631 -6.34226 -4.25307 1.94909 2.89029 3.14312 3.23078 3.24260 3.26465 3.98827 4.19647 4.38955 5.26981 5.34765 5.40556 5.56306 5.64080 5.70199 5.93954 6.00578 6.09033 6.21755 6.34264 6.56436 6.75647 6.82191 7.01490 7.23042 7.42479 7.76547 8.32020 8.54400 8.97332 9.20165 9.88473 10.64117 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.027290 B = 0.009501 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.789038 B = 2946.280019 C = 3765.757892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.126 6.126 3 C 0.048 3.952 4 C -0.292 4.292 5 C 0.215 3.785 6 C -0.449 4.449 7 H 0.078 0.922 8 C 0.074 3.926 9 N -0.777 5.777 10 Si 0.906 3.094 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.266 1.266 14 N -0.299 5.299 15 N -0.388 5.388 16 C 0.171 3.829 17 C -0.153 4.153 18 C -0.155 4.155 19 H 0.099 0.901 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.117 0.883 23 H 0.270 0.730 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 -8.853 -0.413 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.105 5.895 3 C -0.189 4.189 4 C -0.330 4.330 5 C 0.060 3.940 6 C -0.489 4.489 7 H 0.097 0.903 8 C -0.144 4.144 9 N -0.406 5.406 10 Si 0.731 3.269 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.191 1.191 14 N -0.128 5.128 15 N -0.172 5.172 16 C 0.068 3.932 17 C -0.211 4.211 18 C -0.213 4.213 19 H 0.117 0.883 20 H 0.102 0.898 21 H 0.099 0.901 22 H 0.135 0.865 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.548 -9.375 -0.836 9.538 hybrid contribution -1.958 1.596 0.387 2.555 sum -0.410 -7.779 -0.450 7.803 Atomic orbital electron populations 1.23485 0.94334 1.05743 1.05970 1.84458 1.07011 1.02899 1.95155 1.22374 0.92146 0.94640 1.09696 1.21354 0.99241 0.92374 1.20048 1.19310 0.89398 0.92490 0.92755 1.18539 1.00704 0.87676 1.41946 0.90342 1.25754 0.94563 1.00542 0.93584 1.69945 1.09449 1.31027 1.30154 0.86383 0.79665 0.81917 0.78902 1.19780 1.20702 1.19054 1.78838 1.18281 0.82530 1.33109 1.49156 1.05011 1.06261 1.56738 1.20749 0.83856 0.93701 0.94934 1.22028 0.96563 1.03525 0.98939 1.22085 1.00445 1.03485 0.95274 0.88256 0.89817 0.90121 0.86475 0.91955 0.90419 0.92864 0.92344 0.90705 0.92322 0.92849 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.97 101.05 1.01 -0.71 16 2 S -0.13 -2.20 21.77 -107.50 -2.34 -4.54 16 3 C 0.05 1.09 7.12 -16.42 -0.12 0.97 16 4 C -0.29 -7.31 10.05 -39.24 -0.39 -7.71 16 5 C 0.21 6.15 6.72 -84.89 -0.57 5.58 16 6 C -0.45 -12.76 9.39 -37.80 -0.35 -13.11 16 7 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 8 C 0.07 2.03 5.48 -17.36 -0.10 1.94 16 9 N -0.78 -22.17 12.00 55.54 0.67 -21.51 16 10 Si 0.91 20.10 29.56 -169.99 -5.03 15.07 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 N -0.30 -8.48 10.73 32.24 0.35 -8.13 16 15 N -0.39 -9.34 3.32 -53.51 -0.18 -9.52 16 16 C 0.17 3.32 3.67 -67.93 -0.25 3.07 16 17 C -0.15 -2.73 9.38 37.16 0.35 -2.39 16 18 C -0.15 -2.77 9.50 37.16 0.35 -2.41 16 19 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 20 H 0.08 1.15 7.49 -51.92 -0.39 0.76 16 21 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.12 2.65 7.15 -52.49 -0.38 2.28 16 23 H 0.27 7.09 8.30 -40.82 -0.34 6.75 16 24 H 0.08 1.37 7.16 -51.93 -0.37 1.00 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 273.07 15.07 4.12 4.12 Total: -1.00 -31.53 273.07 -6.55 -38.08 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.06 Total: 1.18 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.07 Total: -14.76 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.83 Total: -39.16 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.34 Total: -4.54 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.53 -6.55 -38.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.122 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds