Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 119.96506 * 2 1 4 4 C 1.38368 * 120.00073 * 180.25205 * 3 2 1 5 5 F 1.35096 * 120.03865 * 179.74188 * 4 3 2 6 6 C 1.38692 * 119.92910 * 359.47310 * 4 3 2 7 7 F 1.35102 * 120.04075 * 180.23139 * 6 4 3 8 8 C 1.38374 * 119.92935 * 0.24934 * 6 4 3 9 9 C 1.38212 * 119.96794 * 179.69799 * 2 1 3 10 10 C 1.50704 * 119.96294 * 0.02562 * 9 2 1 11 11 H 1.09007 * 109.47001 * 354.20664 * 10 9 2 12 12 C 1.52995 * 109.47224 * 234.20629 * 10 9 2 13 13 C 1.50694 * 109.47141 * 114.20267 * 10 9 2 14 14 H 1.08006 * 120.00294 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99976 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00263 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00026 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47042 * 90.00092 * 17 15 13 19 19 H 1.48492 * 109.47133 * 209.99932 * 17 15 13 20 20 H 1.48497 * 109.47032 * 330.00112 * 17 15 13 21 21 H 1.09000 * 109.47045 * 264.72139 * 1 2 3 22 22 H 1.09007 * 109.46846 * 24.71923 * 1 2 3 23 23 H 1.09003 * 109.46727 * 144.71705 * 1 2 3 24 24 H 1.07997 * 120.00098 * 359.97060 * 3 2 1 25 25 H 1.08000 * 120.00309 * 180.02562 * 8 6 4 26 26 H 1.08997 * 109.47091 * 300.00067 * 12 10 9 27 27 H 1.09002 * 109.47059 * 59.99773 * 12 10 9 28 28 H 1.09001 * 109.47270 * 179.97438 * 12 10 9 29 29 H 0.96998 * 120.00378 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1978 0.0000 4 6 3.5812 1.1987 -0.0053 5 9 4.2568 2.3686 -0.0105 6 6 4.2740 -0.0028 0.0005 7 9 5.6250 -0.0046 0.0001 8 6 3.5799 -1.1999 0.0063 9 6 2.1974 -1.1973 0.0063 10 6 1.4423 -2.5015 0.0126 11 1 0.3753 -2.3031 0.1149 12 6 1.9164 -3.3597 1.1871 13 6 1.6952 -3.2346 -1.2795 14 1 2.3387 -2.7999 -2.0301 15 6 1.1050 -4.4604 -1.5035 16 7 0.3210 -4.9897 -0.5899 17 14 1.4191 -5.3695 -3.1049 18 1 2.6065 -6.2478 -2.9509 19 1 0.2333 -6.1957 -3.4458 20 1 1.6671 -4.3877 -4.1910 21 1 -0.3633 -0.0945 1.0233 22 1 -0.3633 0.9336 -0.4298 23 1 -0.3633 -0.8389 -0.5936 24 1 1.6570 2.1328 -0.0005 25 1 4.1182 -2.1362 0.0112 26 1 2.9833 -3.5580 1.0848 27 1 1.7334 -2.8294 2.1217 28 1 1.3699 -4.3028 1.1920 29 1 -0.0939 -5.8522 -0.7473 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091419.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = -84.727152 kcal Electronic energy + Delta-G solvation = -15365.956942 eV Core-core repulsion = 12503.385896 eV Total energy + Delta-G solvation = -2862.571045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.00686 -48.08970 -38.97087 -34.36989 -32.02608 -31.44108 -28.40279 -26.16471 -25.24181 -23.22301 -21.36923 -19.87637 -17.23375 -16.95915 -16.29821 -15.87755 -15.76702 -14.70048 -14.53630 -13.89946 -13.54810 -13.53006 -13.22168 -13.15669 -12.61432 -11.67070 -11.56451 -11.49234 -11.17105 -10.98700 -10.92010 -10.69022 -10.34452 -10.12043 -9.61158 -9.11804 -8.46147 -8.40650 -7.80990 -6.11522 -4.19206 1.47520 1.57938 3.24773 3.32140 3.35746 3.93155 4.29257 4.36458 4.76749 5.05817 5.20014 5.34361 5.57441 5.59976 5.92340 6.08138 6.20260 6.31702 6.47919 6.55725 6.66534 6.77797 6.88282 7.03022 7.14793 7.38034 7.59457 7.80334 7.96932 8.24908 8.83145 9.46391 10.93762 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.008319 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.211597 B = 3365.127595 C = 3685.771785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.131 4.131 4 C 0.036 3.964 5 F -0.143 7.143 6 C 0.055 3.945 7 F -0.140 7.140 8 C -0.118 4.118 9 C -0.012 4.012 10 C 0.067 3.933 11 H 0.050 0.950 12 C -0.136 4.136 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.029 0.971 27 H 0.010 0.990 28 H 0.088 0.912 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 8.030 1.952 8.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.150 4.150 4 C 0.016 3.984 5 F -0.121 7.121 6 C 0.035 3.965 7 F -0.119 7.119 8 C -0.136 4.136 9 C -0.012 4.012 10 C 0.049 3.951 11 H 0.068 0.932 12 C -0.193 4.193 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.152 0.848 25 H 0.162 0.838 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.107 0.893 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.564 7.914 1.982 8.307 hybrid contribution 0.693 -0.289 -0.894 1.168 sum 2.258 7.625 1.088 8.026 Atomic orbital electron populations 1.20826 0.90399 1.03022 1.02654 1.19774 0.96862 0.91459 0.99702 1.20813 0.90932 0.99388 1.03823 1.17500 0.90519 0.79896 1.10457 1.91444 1.80351 1.45687 1.94664 1.17761 0.76951 0.93715 1.08115 1.91457 1.28693 1.97360 1.94380 1.21046 0.95009 0.96051 1.01519 1.20552 0.92515 0.97149 0.91029 1.18055 0.95258 0.86282 0.95528 0.93182 1.21832 0.99821 1.02639 0.95026 1.21062 1.29602 1.03431 1.00949 0.92400 1.24929 0.94801 0.97212 0.96728 1.69867 1.31007 1.18085 1.33619 0.86566 0.77805 0.79806 0.83736 1.20584 1.21139 1.19835 0.91234 0.92298 0.89352 0.84751 0.83771 0.95173 0.97048 0.89331 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.14 36.01 0.33 -1.40 15 2 C -0.08 -1.37 5.88 -104.62 -0.62 -1.98 15 3 C -0.13 -2.12 9.66 -39.53 -0.38 -2.50 15 4 C 0.04 0.64 7.31 -39.37 -0.29 0.35 15 5 F -0.14 -2.47 17.18 2.25 0.04 -2.43 15 6 C 0.05 1.02 7.31 -39.36 -0.29 0.73 15 7 F -0.14 -2.61 17.18 2.25 0.04 -2.57 15 8 C -0.12 -2.30 8.89 -39.52 -0.35 -2.65 15 9 C -0.01 -0.24 4.73 -104.62 -0.49 -0.74 15 10 C 0.07 1.53 2.20 -92.93 -0.20 1.33 15 11 H 0.05 1.19 5.71 -51.93 -0.30 0.89 15 12 C -0.14 -3.05 8.72 37.15 0.32 -2.73 15 13 C -0.51 -13.11 8.32 -34.44 -0.29 -13.40 15 14 H 0.06 1.50 7.73 -52.48 -0.41 1.09 15 15 C 0.07 1.70 5.30 -17.82 -0.09 1.60 15 16 N -0.89 -23.76 11.32 55.43 0.63 -23.13 15 17 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 15 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.06 0.74 8.05 -51.92 -0.42 0.33 15 23 H 0.09 1.52 6.53 -51.93 -0.34 1.19 15 24 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 25 H 0.14 2.81 7.24 -52.49 -0.38 2.43 15 26 H 0.03 0.65 7.08 -51.93 -0.37 0.28 15 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 15 28 H 0.09 2.20 6.07 -51.93 -0.32 1.88 15 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 15 LS Contribution 255.07 15.07 3.84 3.84 Total: -1.00 -26.26 255.07 -5.75 -32.01 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -2.93 Total: -1.72 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.35 Total: -21.38 kcal Atomic # 7 Polarization: -23.76 SS G_CDS: 0.63 Total: -23.13 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.08 Total: -5.00 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.26 -5.75 -32.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091419.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.714 kcal (2) G-P(sol) polarization free energy of solvation -26.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds