Wall clock time and date at job start Mon Mar 30 2020 03:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37711 * 124.87082 * 2 1 4 4 C 1.39119 * 125.70532 * 359.97438 * 3 2 1 5 5 H 1.08006 * 119.99760 * 325.65280 * 4 3 2 6 6 C 1.40643 * 120.00370 * 145.65455 * 4 3 2 7 7 N 1.30470 * 119.99399 * 339.04044 * 6 4 3 8 8 Si 1.86797 * 120.00335 * 159.03826 * 6 4 3 9 9 H 1.48504 * 109.46778 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47104 * 119.99826 * 8 6 4 11 11 H 1.48494 * 109.47080 * 240.00368 * 8 6 4 12 12 C 1.41219 * 108.59255 * 180.02562 * 3 2 1 13 13 C 1.43205 * 126.91345 * 180.02562 * 12 3 2 14 14 N 4.77451 * 151.57674 * 0.02562 * 2 1 3 15 15 C 1.46656 * 106.17697 * 359.97438 * 12 3 2 16 16 C 1.39875 * 133.40675 * 180.02562 * 15 12 3 17 17 C 1.36613 * 119.79017 * 180.02562 * 16 15 12 18 18 C 1.38873 * 120.45227 * 0.02562 * 17 16 15 19 19 C 1.37904 * 120.71609 * 0.02562 * 18 17 16 20 20 C 1.38070 * 124.87170 * 179.69907 * 2 1 3 21 21 H 1.08994 * 109.47577 * 90.02005 * 1 2 3 22 22 H 1.08998 * 109.47276 * 210.02665 * 1 2 3 23 23 H 1.09010 * 109.46730 * 330.02387 * 1 2 3 24 24 H 0.97001 * 119.99709 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.10810 * 0.02562 * 16 15 12 26 26 H 1.08000 * 119.77539 * 180.02562 * 17 16 15 27 27 H 1.08003 * 119.63860 * 179.97438 * 18 17 16 28 28 H 1.08000 * 120.04775 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2523 1.1298 0.0000 4 6 1.7897 2.4418 -0.0005 5 1 0.8819 2.6941 -0.5287 6 6 2.5039 3.4397 0.6867 7 7 3.3346 3.1099 1.6371 8 14 2.2633 5.2371 0.2385 9 1 1.2739 5.3442 -0.8637 10 1 1.7655 5.9804 1.4238 11 1 3.5586 5.8154 -0.2005 12 6 3.6079 0.7340 -0.0006 13 6 4.7544 1.5920 -0.0003 14 7 5.6639 2.2726 0.0010 15 6 3.6053 -0.7326 -0.0003 16 6 4.6198 -1.6955 -0.0002 17 6 4.2958 -3.0227 -0.0005 18 6 2.9659 -3.4226 -0.0014 19 6 1.9500 -2.4900 -0.0026 20 6 2.2544 -1.1328 0.0059 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5135 24 1 3.8269 3.7981 2.1113 25 1 5.6559 -1.3909 0.0001 26 1 5.0793 -3.7660 0.0000 27 1 2.7247 -4.4753 -0.0021 28 1 0.9194 -2.8130 -0.0038 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261193294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:17 Heat of formation + Delta-G solvation = 66.236854 kcal Electronic energy + Delta-G solvation = -14644.899491 eV Core-core repulsion = 12239.563923 eV Total energy + Delta-G solvation = -2405.335568 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.95185 -36.29647 -34.83257 -33.61826 -31.55985 -29.58221 -28.82821 -25.86367 -25.43327 -21.53840 -21.08494 -19.98530 -17.65606 -16.51641 -15.80498 -15.05951 -14.46446 -14.30921 -14.08374 -13.14661 -13.03480 -12.69531 -12.33661 -12.00919 -11.81163 -11.52336 -11.46600 -11.22435 -11.16676 -11.04622 -10.59959 -10.24228 -10.17123 -9.78843 -9.34264 -8.51144 -7.37184 -7.09942 -6.59960 -4.78845 2.10010 2.48732 2.82214 2.97459 3.03287 3.39009 3.70205 3.88929 4.49784 4.57903 4.74915 5.40832 5.53101 5.55500 5.75314 5.81193 5.87018 6.04657 6.13600 6.25895 6.50408 6.66776 6.68210 6.78600 7.05734 7.25011 7.36948 7.55136 7.64249 7.76963 8.10036 8.28678 8.52836 8.69662 9.46389 9.84837 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.010088 C = 0.008081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.699477 B = 2775.012523 C = 3463.999199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.515 5.515 3 C 0.351 3.649 4 C -0.467 4.467 5 H 0.094 0.906 6 C 0.089 3.911 7 N -0.746 5.746 8 Si 0.914 3.086 9 H -0.255 1.255 10 H -0.270 1.270 11 H -0.266 1.266 12 C -0.274 4.274 13 C 0.356 3.644 14 N -0.540 5.540 15 C -0.015 4.015 16 C -0.120 4.120 17 C -0.139 4.139 18 C -0.154 4.154 19 C -0.124 4.124 20 C 0.075 3.925 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.292 0.708 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 -5.023 -1.370 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.205 5.205 3 C 0.241 3.759 4 C -0.498 4.498 5 H 0.112 0.888 6 C -0.138 4.138 7 N -0.367 5.367 8 Si 0.737 3.263 9 H -0.179 1.179 10 H -0.195 1.195 11 H -0.191 1.191 12 C -0.283 4.283 13 C 0.048 3.952 14 N -0.221 5.221 15 C -0.021 4.021 16 C -0.139 4.139 17 C -0.158 4.158 18 C -0.173 4.173 19 C -0.146 4.146 20 C -0.027 4.027 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.010 -3.930 -1.179 6.475 hybrid contribution -0.522 0.462 -0.003 0.697 sum -5.532 -3.468 -1.182 6.635 Atomic orbital electron populations 1.21576 0.78855 1.03041 1.01297 1.44215 1.04801 1.04287 1.67158 1.17625 0.86665 0.85197 0.86392 1.18639 1.11036 0.89791 1.30377 0.88840 1.25870 0.93082 1.02268 0.92542 1.69569 1.16748 1.37697 1.12691 0.86135 0.79948 0.80404 0.79790 1.17882 1.19505 1.19050 1.15685 0.87504 0.87331 1.37776 1.24239 0.90718 0.90833 0.89433 1.80912 1.13060 1.10327 1.17843 1.18821 0.91634 0.91952 0.99734 1.20110 0.97583 0.92017 1.04218 1.20339 0.95723 0.95135 1.04639 1.20393 0.92452 0.97555 1.06924 1.19850 0.98363 0.89621 1.06726 1.18145 0.90154 0.87750 1.06691 0.93072 0.91652 0.90081 0.89605 0.87601 0.87616 0.87445 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.76 59.85 0.64 2.16 15 2 N -0.52 -10.96 3.21 -118.68 -0.38 -11.34 15 3 C 0.35 8.55 6.28 -83.77 -0.53 8.03 15 4 C -0.47 -11.06 8.41 -38.35 -0.32 -11.38 15 5 H 0.09 2.03 7.94 -52.48 -0.42 1.61 15 6 C 0.09 2.12 4.67 -17.22 -0.08 2.04 15 7 N -0.75 -18.96 10.82 55.59 0.60 -18.36 15 8 Si 0.91 18.12 29.61 -169.99 -5.03 13.09 15 9 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 10 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 12 C -0.27 -7.04 5.90 -103.44 -0.61 -7.65 15 13 C 0.36 9.59 12.72 -22.47 -0.29 9.31 15 14 N -0.54 -14.80 18.51 41.84 0.77 -14.03 15 15 C -0.02 -0.36 6.31 -104.88 -0.66 -1.02 15 16 C -0.12 -2.52 10.06 -39.56 -0.40 -2.92 15 17 C -0.14 -2.50 9.98 -39.93 -0.40 -2.90 15 18 C -0.15 -2.64 10.02 -39.47 -0.40 -3.03 15 19 C -0.12 -2.26 9.87 -39.38 -0.39 -2.65 15 20 C 0.07 1.60 6.78 -83.73 -0.57 1.03 15 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.06 0.89 7.93 -51.93 -0.41 0.48 15 23 H 0.08 1.26 7.69 -51.92 -0.40 0.86 15 24 H 0.29 7.01 8.29 -40.82 -0.34 6.67 15 25 H 0.11 2.15 8.06 -52.49 -0.42 1.73 15 26 H 0.11 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15 28 H 0.10 1.60 7.94 -52.49 -0.42 1.19 15 LS Contribution 257.33 15.07 3.88 3.88 Total: -1.00 -28.35 257.33 -6.62 -34.97 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -2.47 Total: 0.78 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.99 Total: -8.99 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 1.00 Total: -43.74 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.35 -6.62 -34.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261193294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.212 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds