Wall clock time and date at job start Mon Mar 30 2020 03:01:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.37711 * 124.87082 * 2 1
4 4 C 1.39119 * 125.70532 * 359.97438 * 3 2 1
5 5 H 1.08006 * 119.99760 * 325.65280 * 4 3 2
6 6 C 1.40643 * 120.00370 * 145.65455 * 4 3 2
7 7 N 1.30470 * 119.99399 * 339.04044 * 6 4 3
8 8 Si 1.86797 * 120.00335 * 159.03826 * 6 4 3
9 9 H 1.48504 * 109.46778 * 0.02562 * 8 6 4
10 10 H 1.48498 * 109.47104 * 119.99826 * 8 6 4
11 11 H 1.48494 * 109.47080 * 240.00368 * 8 6 4
12 12 C 1.41219 * 108.59255 * 180.02562 * 3 2 1
13 13 C 1.43205 * 126.91345 * 180.02562 * 12 3 2
14 14 N 4.77451 * 151.57674 * 0.02562 * 2 1 3
15 15 C 1.46656 * 106.17697 * 359.97438 * 12 3 2
16 16 C 1.39875 * 133.40675 * 180.02562 * 15 12 3
17 17 C 1.36613 * 119.79017 * 180.02562 * 16 15 12
18 18 C 1.38873 * 120.45227 * 0.02562 * 17 16 15
19 19 C 1.37904 * 120.71609 * 0.02562 * 18 17 16
20 20 C 1.38070 * 124.87170 * 179.69907 * 2 1 3
21 21 H 1.08994 * 109.47577 * 90.02005 * 1 2 3
22 22 H 1.08998 * 109.47276 * 210.02665 * 1 2 3
23 23 H 1.09010 * 109.46730 * 330.02387 * 1 2 3
24 24 H 0.97001 * 119.99709 * 180.02562 * 7 6 4
25 25 H 1.08002 * 120.10810 * 0.02562 * 16 15 12
26 26 H 1.08000 * 119.77539 * 180.02562 * 17 16 15
27 27 H 1.08003 * 119.63860 * 179.97438 * 18 17 16
28 28 H 1.08000 * 120.04775 * 179.97438 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2523 1.1298 0.0000
4 6 1.7897 2.4418 -0.0005
5 1 0.8819 2.6941 -0.5287
6 6 2.5039 3.4397 0.6867
7 7 3.3346 3.1099 1.6371
8 14 2.2633 5.2371 0.2385
9 1 1.2739 5.3442 -0.8637
10 1 1.7655 5.9804 1.4238
11 1 3.5586 5.8154 -0.2005
12 6 3.6079 0.7340 -0.0006
13 6 4.7544 1.5920 -0.0003
14 7 5.6639 2.2726 0.0010
15 6 3.6053 -0.7326 -0.0003
16 6 4.6198 -1.6955 -0.0002
17 6 4.2958 -3.0227 -0.0005
18 6 2.9659 -3.4226 -0.0014
19 6 1.9500 -2.4900 -0.0026
20 6 2.2544 -1.1328 0.0059
21 1 -0.3634 -0.0004 -1.0276
22 1 -0.3634 -0.8897 0.5142
23 1 -0.3633 0.8903 0.5135
24 1 3.8269 3.7981 2.1113
25 1 5.6559 -1.3909 0.0001
26 1 5.0793 -3.7660 0.0000
27 1 2.7247 -4.4753 -0.0021
28 1 0.9194 -2.8130 -0.0038
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261193294.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:17
Heat of formation + Delta-G solvation = 66.236854 kcal
Electronic energy + Delta-G solvation = -14644.899491 eV
Core-core repulsion = 12239.563923 eV
Total energy + Delta-G solvation = -2405.335568 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 226.080 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.95185 -36.29647 -34.83257 -33.61826 -31.55985 -29.58221 -28.82821 -25.86367
-25.43327 -21.53840 -21.08494 -19.98530 -17.65606 -16.51641 -15.80498 -15.05951
-14.46446 -14.30921 -14.08374 -13.14661 -13.03480 -12.69531 -12.33661 -12.00919
-11.81163 -11.52336 -11.46600 -11.22435 -11.16676 -11.04622 -10.59959 -10.24228
-10.17123 -9.78843 -9.34264 -8.51144 -7.37184 -7.09942 -6.59960 -4.78845
2.10010 2.48732 2.82214 2.97459 3.03287 3.39009 3.70205 3.88929
4.49784 4.57903 4.74915 5.40832 5.53101 5.55500 5.75314 5.81193
5.87018 6.04657 6.13600 6.25895 6.50408 6.66776 6.68210 6.78600
7.05734 7.25011 7.36948 7.55136 7.64249 7.76963 8.10036 8.28678
8.52836 8.69662 9.46389 9.84837
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.034192 B = 0.010088 C = 0.008081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 818.699477 B = 2775.012523 C = 3463.999199
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.515 5.515
3 C 0.351 3.649
4 C -0.467 4.467
5 H 0.094 0.906
6 C 0.089 3.911
7 N -0.746 5.746
8 Si 0.914 3.086
9 H -0.255 1.255
10 H -0.270 1.270
11 H -0.266 1.266
12 C -0.274 4.274
13 C 0.356 3.644
14 N -0.540 5.540
15 C -0.015 4.015
16 C -0.120 4.120
17 C -0.139 4.139
18 C -0.154 4.154
19 C -0.124 4.124
20 C 0.075 3.925
21 H 0.051 0.949
22 H 0.065 0.935
23 H 0.081 0.919
24 H 0.292 0.708
25 H 0.106 0.894
26 H 0.106 0.894
27 H 0.107 0.893
28 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.267 -5.023 -1.370 8.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.048 4.048
2 N -0.205 5.205
3 C 0.241 3.759
4 C -0.498 4.498
5 H 0.112 0.888
6 C -0.138 4.138
7 N -0.367 5.367
8 Si 0.737 3.263
9 H -0.179 1.179
10 H -0.195 1.195
11 H -0.191 1.191
12 C -0.283 4.283
13 C 0.048 3.952
14 N -0.221 5.221
15 C -0.021 4.021
16 C -0.139 4.139
17 C -0.158 4.158
18 C -0.173 4.173
19 C -0.146 4.146
20 C -0.027 4.027
21 H 0.069 0.931
22 H 0.083 0.917
23 H 0.099 0.901
24 H 0.104 0.896
25 H 0.124 0.876
26 H 0.124 0.876
27 H 0.126 0.874
28 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -5.010 -3.930 -1.179 6.475
hybrid contribution -0.522 0.462 -0.003 0.697
sum -5.532 -3.468 -1.182 6.635
Atomic orbital electron populations
1.21576 0.78855 1.03041 1.01297 1.44215 1.04801 1.04287 1.67158
1.17625 0.86665 0.85197 0.86392 1.18639 1.11036 0.89791 1.30377
0.88840 1.25870 0.93082 1.02268 0.92542 1.69569 1.16748 1.37697
1.12691 0.86135 0.79948 0.80404 0.79790 1.17882 1.19505 1.19050
1.15685 0.87504 0.87331 1.37776 1.24239 0.90718 0.90833 0.89433
1.80912 1.13060 1.10327 1.17843 1.18821 0.91634 0.91952 0.99734
1.20110 0.97583 0.92017 1.04218 1.20339 0.95723 0.95135 1.04639
1.20393 0.92452 0.97555 1.06924 1.19850 0.98363 0.89621 1.06726
1.18145 0.90154 0.87750 1.06691 0.93072 0.91652 0.90081 0.89605
0.87601 0.87616 0.87445 0.87761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.52 10.76 59.85 0.64 2.16 15
2 N -0.52 -10.96 3.21 -118.68 -0.38 -11.34 15
3 C 0.35 8.55 6.28 -83.77 -0.53 8.03 15
4 C -0.47 -11.06 8.41 -38.35 -0.32 -11.38 15
5 H 0.09 2.03 7.94 -52.48 -0.42 1.61 15
6 C 0.09 2.12 4.67 -17.22 -0.08 2.04 15
7 N -0.75 -18.96 10.82 55.59 0.60 -18.36 15
8 Si 0.91 18.12 29.61 -169.99 -5.03 13.09 15
9 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15
10 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15
11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15
12 C -0.27 -7.04 5.90 -103.44 -0.61 -7.65 15
13 C 0.36 9.59 12.72 -22.47 -0.29 9.31 15
14 N -0.54 -14.80 18.51 41.84 0.77 -14.03 15
15 C -0.02 -0.36 6.31 -104.88 -0.66 -1.02 15
16 C -0.12 -2.52 10.06 -39.56 -0.40 -2.92 15
17 C -0.14 -2.50 9.98 -39.93 -0.40 -2.90 15
18 C -0.15 -2.64 10.02 -39.47 -0.40 -3.03 15
19 C -0.12 -2.26 9.87 -39.38 -0.39 -2.65 15
20 C 0.07 1.60 6.78 -83.73 -0.57 1.03 15
21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15
22 H 0.06 0.89 7.93 -51.93 -0.41 0.48 15
23 H 0.08 1.26 7.69 -51.92 -0.40 0.86 15
24 H 0.29 7.01 8.29 -40.82 -0.34 6.67 15
25 H 0.11 2.15 8.06 -52.49 -0.42 1.73 15
26 H 0.11 1.59 8.06 -52.49 -0.42 1.17 15
27 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15
28 H 0.10 1.60 7.94 -52.49 -0.42 1.19 15
LS Contribution 257.33 15.07 3.88 3.88
Total: -1.00 -28.35 257.33 -6.62 -34.97
By element:
Atomic # 1 Polarization: 3.25 SS G_CDS: -2.47 Total: 0.78 kcal
Atomic # 6 Polarization: -4.99 SS G_CDS: -3.99 Total: -8.99 kcal
Atomic # 7 Polarization: -44.73 SS G_CDS: 1.00 Total: -43.74 kcal
Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -28.35 -6.62 -34.97 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261193294.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.212 kcal
(2) G-P(sol) polarization free energy of solvation -28.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds