Wall clock time and date at job start Mon Mar 30 2020 03:01:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.37711 * 124.87082 * 2 1
4 4 C 1.39119 * 125.70532 * 359.97438 * 3 2 1
5 5 H 1.08006 * 119.99760 * 325.65280 * 4 3 2
6 6 C 1.40643 * 120.00370 * 145.65455 * 4 3 2
7 7 N 1.30470 * 119.99399 * 339.04044 * 6 4 3
8 8 Si 1.86797 * 120.00335 * 159.03826 * 6 4 3
9 9 H 1.48504 * 109.46778 * 0.02562 * 8 6 4
10 10 H 1.48498 * 109.47104 * 119.99826 * 8 6 4
11 11 H 1.48494 * 109.47080 * 240.00368 * 8 6 4
12 12 C 1.41219 * 108.59255 * 180.02562 * 3 2 1
13 13 C 1.43205 * 126.91345 * 180.02562 * 12 3 2
14 14 N 4.77451 * 151.57674 * 0.02562 * 2 1 3
15 15 C 1.46656 * 106.17697 * 359.97438 * 12 3 2
16 16 C 1.39875 * 133.40675 * 180.02562 * 15 12 3
17 17 C 1.36613 * 119.79017 * 180.02562 * 16 15 12
18 18 C 1.38873 * 120.45227 * 0.02562 * 17 16 15
19 19 C 1.37904 * 120.71609 * 0.02562 * 18 17 16
20 20 C 1.38070 * 124.87170 * 179.69907 * 2 1 3
21 21 H 1.08994 * 109.47577 * 90.02005 * 1 2 3
22 22 H 1.08998 * 109.47276 * 210.02665 * 1 2 3
23 23 H 1.09010 * 109.46730 * 330.02387 * 1 2 3
24 24 H 0.97001 * 119.99709 * 180.02562 * 7 6 4
25 25 H 1.08002 * 120.10810 * 0.02562 * 16 15 12
26 26 H 1.08000 * 119.77539 * 180.02562 * 17 16 15
27 27 H 1.08003 * 119.63860 * 179.97438 * 18 17 16
28 28 H 1.08000 * 120.04775 * 179.97438 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2523 1.1298 0.0000
4 6 1.7897 2.4418 -0.0005
5 1 0.8819 2.6941 -0.5287
6 6 2.5039 3.4397 0.6867
7 7 3.3346 3.1099 1.6371
8 14 2.2633 5.2371 0.2385
9 1 1.2739 5.3442 -0.8637
10 1 1.7655 5.9804 1.4238
11 1 3.5586 5.8154 -0.2005
12 6 3.6079 0.7340 -0.0006
13 6 4.7544 1.5920 -0.0003
14 7 5.6639 2.2726 0.0010
15 6 3.6053 -0.7326 -0.0003
16 6 4.6198 -1.6955 -0.0002
17 6 4.2958 -3.0227 -0.0005
18 6 2.9659 -3.4226 -0.0014
19 6 1.9500 -2.4900 -0.0026
20 6 2.2544 -1.1328 0.0059
21 1 -0.3634 -0.0004 -1.0276
22 1 -0.3634 -0.8897 0.5142
23 1 -0.3633 0.8903 0.5135
24 1 3.8269 3.7981 2.1113
25 1 5.6559 -1.3909 0.0001
26 1 5.0793 -3.7660 0.0000
27 1 2.7247 -4.4753 -0.0021
28 1 0.9194 -2.8130 -0.0038
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261193294.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:17
Heat of formation + Delta-G solvation = 51.176778 kcal
Electronic energy + Delta-G solvation = -14645.552545 eV
Core-core repulsion = 12239.563923 eV
Total energy + Delta-G solvation = -2405.988622 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 226.080 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.55137 -37.85228 -36.78348 -35.42819 -33.14829 -31.11695 -30.45365 -27.41458
-27.06828 -23.20259 -22.68870 -21.56054 -19.39383 -18.12498 -17.45849 -16.62610
-16.11550 -15.82229 -15.63662 -14.67881 -14.54214 -14.38922 -14.01581 -13.58756
-13.46055 -13.26681 -13.14345 -13.00414 -12.85153 -12.57304 -12.15920 -11.82724
-11.70866 -11.43007 -11.06964 -10.11445 -9.06466 -8.81127 -8.25955 -6.60823
0.52802 0.95465 1.20094 1.34707 1.49627 1.65453 2.08046 2.27215
2.52820 2.77127 3.15327 3.52778 4.04163 4.09999 4.37241 4.41134
4.58318 4.67946 4.75633 4.87734 4.97627 4.98781 5.06860 5.20768
5.47278 5.63532 5.80145 5.95821 6.04530 6.20509 6.38243 6.55885
6.81848 7.05872 7.43464 8.08364
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.034192 B = 0.010088 C = 0.008081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 818.699477 B = 2775.012523 C = 3463.999199
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.517 5.517
3 C 0.337 3.663
4 C -0.483 4.483
5 H 0.110 0.890
6 C 0.053 3.947
7 N -0.787 5.787
8 Si 0.975 3.025
9 H -0.236 1.236
10 H -0.255 1.255
11 H -0.287 1.287
12 C -0.317 4.317
13 C 0.354 3.646
14 N -0.573 5.573
15 C -0.057 4.057
16 C -0.140 4.140
17 C -0.134 4.134
18 C -0.137 4.137
19 C -0.121 4.121
20 C 0.062 3.938
21 H 0.071 0.929
22 H 0.093 0.907
23 H 0.080 0.920
24 H 0.290 0.710
25 H 0.096 0.904
26 H 0.139 0.861
27 H 0.153 0.847
28 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.466 -7.158 -1.803 11.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 N -0.206 5.206
3 C 0.225 3.775
4 C -0.515 4.515
5 H 0.128 0.872
6 C -0.170 4.170
7 N -0.409 5.409
8 Si 0.795 3.205
9 H -0.158 1.158
10 H -0.179 1.179
11 H -0.213 1.213
12 C -0.327 4.327
13 C 0.049 3.951
14 N -0.256 5.256
15 C -0.063 4.063
16 C -0.159 4.159
17 C -0.153 4.153
18 C -0.156 4.156
19 C -0.142 4.142
20 C -0.040 4.040
21 H 0.090 0.910
22 H 0.112 0.888
23 H 0.099 0.901
24 H 0.101 0.899
25 H 0.114 0.886
26 H 0.157 0.843
27 H 0.171 0.829
28 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -7.253 -6.101 -1.615 9.614
hybrid contribution 0.142 0.858 0.122 0.878
sum -7.111 -5.243 -1.492 8.960
Atomic orbital electron populations
1.21903 0.75852 1.04490 1.03047 1.44407 1.06541 1.03339 1.66335
1.17828 0.86855 0.86464 0.86324 1.18973 1.11836 0.89993 1.30694
0.87175 1.26739 0.92330 1.06044 0.91910 1.69659 1.18341 1.38666
1.14276 0.85240 0.79125 0.75637 0.80506 1.15808 1.17927 1.21305
1.16157 0.87845 0.88809 1.39892 1.24740 0.90885 0.90592 0.88907
1.80846 1.13903 1.11150 1.19703 1.19103 0.93746 0.91287 1.02130
1.20287 0.96906 0.93364 1.05393 1.20761 0.97591 0.94259 1.02664
1.20982 0.91488 0.99670 1.03456 1.20329 1.00732 0.88024 1.05136
1.18536 0.89358 0.89148 1.06941 0.91048 0.88833 0.90080 0.89909
0.88579 0.84275 0.82903 0.84088
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 2.57 10.76 127.77 1.38 3.95 15
2 N -0.52 -21.47 3.21 -529.40 -1.70 -23.17 15
3 C 0.34 16.69 6.28 39.16 0.25 16.94 15
4 C -0.48 -23.11 8.41 23.07 0.19 -22.91 15
5 H 0.11 4.71 7.94 -2.91 -0.02 4.68 15
6 C 0.05 2.55 4.67 85.48 0.40 2.95 15
7 N -0.79 -41.61 10.82 21.95 0.24 -41.37 15
8 Si 0.97 37.51 29.61 68.60 2.03 39.54 15
9 H -0.24 -8.23 7.11 99.48 0.71 -7.52 15
10 H -0.26 -9.11 7.11 99.48 0.71 -8.40 15
11 H -0.29 -11.96 7.11 99.48 0.71 -11.26 15
12 C -0.32 -16.93 5.90 -19.10 -0.11 -17.04 15
13 C 0.35 20.14 12.72 88.33 1.12 21.26 15
14 N -0.57 -33.08 18.51 19.00 0.35 -32.72 15
15 C -0.06 -2.70 6.31 -20.03 -0.13 -2.83 15
16 C -0.14 -5.87 10.06 22.29 0.22 -5.64 15
17 C -0.13 -4.38 9.98 22.04 0.22 -4.16 15
18 C -0.14 -4.00 10.02 22.34 0.22 -3.78 15
19 C -0.12 -3.91 9.87 22.40 0.22 -3.69 15
20 C 0.06 2.57 6.78 39.02 0.26 2.83 15
21 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15
22 H 0.09 2.19 7.93 -2.39 -0.02 2.17 15
23 H 0.08 2.37 7.69 -2.38 -0.02 2.35 15
24 H 0.29 14.60 8.29 -92.71 -0.77 13.83 15
25 H 0.10 4.05 8.06 -2.91 -0.02 4.02 15
26 H 0.14 3.60 8.06 -2.91 -0.02 3.58 15
27 H 0.15 3.16 8.06 -2.91 -0.02 3.14 15
28 H 0.14 3.49 7.94 -2.91 -0.02 3.47 15
Total: -1.00 -64.34 257.33 6.36 -57.99
By element:
Atomic # 1 Polarization: 10.68 SS G_CDS: 1.18 Total: 11.86 kcal
Atomic # 6 Polarization: -16.38 SS G_CDS: 4.25 Total: -12.12 kcal
Atomic # 7 Polarization: -96.16 SS G_CDS: -1.11 Total: -97.27 kcal
Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal
Total: -64.34 6.36 -57.99 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261193294.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.166 kcal
(2) G-P(sol) polarization free energy of solvation -64.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.822 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.989 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.177 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds