Wall clock time and date at job start Mon Mar 30 2020 03:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37711 * 124.87082 * 2 1 4 4 C 1.39119 * 125.70532 * 359.97438 * 3 2 1 5 5 H 1.08006 * 119.99760 * 325.65280 * 4 3 2 6 6 C 1.40643 * 120.00370 * 145.65455 * 4 3 2 7 7 N 1.30470 * 119.99399 * 339.04044 * 6 4 3 8 8 Si 1.86797 * 120.00335 * 159.03826 * 6 4 3 9 9 H 1.48504 * 109.46778 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47104 * 119.99826 * 8 6 4 11 11 H 1.48494 * 109.47080 * 240.00368 * 8 6 4 12 12 C 1.41219 * 108.59255 * 180.02562 * 3 2 1 13 13 C 1.43205 * 126.91345 * 180.02562 * 12 3 2 14 14 N 4.77451 * 151.57674 * 0.02562 * 2 1 3 15 15 C 1.46656 * 106.17697 * 359.97438 * 12 3 2 16 16 C 1.39875 * 133.40675 * 180.02562 * 15 12 3 17 17 C 1.36613 * 119.79017 * 180.02562 * 16 15 12 18 18 C 1.38873 * 120.45227 * 0.02562 * 17 16 15 19 19 C 1.37904 * 120.71609 * 0.02562 * 18 17 16 20 20 C 1.38070 * 124.87170 * 179.69907 * 2 1 3 21 21 H 1.08994 * 109.47577 * 90.02005 * 1 2 3 22 22 H 1.08998 * 109.47276 * 210.02665 * 1 2 3 23 23 H 1.09010 * 109.46730 * 330.02387 * 1 2 3 24 24 H 0.97001 * 119.99709 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.10810 * 0.02562 * 16 15 12 26 26 H 1.08000 * 119.77539 * 180.02562 * 17 16 15 27 27 H 1.08003 * 119.63860 * 179.97438 * 18 17 16 28 28 H 1.08000 * 120.04775 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2523 1.1298 0.0000 4 6 1.7897 2.4418 -0.0005 5 1 0.8819 2.6941 -0.5287 6 6 2.5039 3.4397 0.6867 7 7 3.3346 3.1099 1.6371 8 14 2.2633 5.2371 0.2385 9 1 1.2739 5.3442 -0.8637 10 1 1.7655 5.9804 1.4238 11 1 3.5586 5.8154 -0.2005 12 6 3.6079 0.7340 -0.0006 13 6 4.7544 1.5920 -0.0003 14 7 5.6639 2.2726 0.0010 15 6 3.6053 -0.7326 -0.0003 16 6 4.6198 -1.6955 -0.0002 17 6 4.2958 -3.0227 -0.0005 18 6 2.9659 -3.4226 -0.0014 19 6 1.9500 -2.4900 -0.0026 20 6 2.2544 -1.1328 0.0059 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5135 24 1 3.8269 3.7981 2.1113 25 1 5.6559 -1.3909 0.0001 26 1 5.0793 -3.7660 0.0000 27 1 2.7247 -4.4753 -0.0021 28 1 0.9194 -2.8130 -0.0038 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261193294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:17 Heat of formation + Delta-G solvation = 51.176778 kcal Electronic energy + Delta-G solvation = -14645.552545 eV Core-core repulsion = 12239.563923 eV Total energy + Delta-G solvation = -2405.988622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.55137 -37.85228 -36.78348 -35.42819 -33.14829 -31.11695 -30.45365 -27.41458 -27.06828 -23.20259 -22.68870 -21.56054 -19.39383 -18.12498 -17.45849 -16.62610 -16.11550 -15.82229 -15.63662 -14.67881 -14.54214 -14.38922 -14.01581 -13.58756 -13.46055 -13.26681 -13.14345 -13.00414 -12.85153 -12.57304 -12.15920 -11.82724 -11.70866 -11.43007 -11.06964 -10.11445 -9.06466 -8.81127 -8.25955 -6.60823 0.52802 0.95465 1.20094 1.34707 1.49627 1.65453 2.08046 2.27215 2.52820 2.77127 3.15327 3.52778 4.04163 4.09999 4.37241 4.41134 4.58318 4.67946 4.75633 4.87734 4.97627 4.98781 5.06860 5.20768 5.47278 5.63532 5.80145 5.95821 6.04530 6.20509 6.38243 6.55885 6.81848 7.05872 7.43464 8.08364 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.010088 C = 0.008081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.699477 B = 2775.012523 C = 3463.999199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.517 5.517 3 C 0.337 3.663 4 C -0.483 4.483 5 H 0.110 0.890 6 C 0.053 3.947 7 N -0.787 5.787 8 Si 0.975 3.025 9 H -0.236 1.236 10 H -0.255 1.255 11 H -0.287 1.287 12 C -0.317 4.317 13 C 0.354 3.646 14 N -0.573 5.573 15 C -0.057 4.057 16 C -0.140 4.140 17 C -0.134 4.134 18 C -0.137 4.137 19 C -0.121 4.121 20 C 0.062 3.938 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.290 0.710 25 H 0.096 0.904 26 H 0.139 0.861 27 H 0.153 0.847 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 -7.158 -1.803 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.206 5.206 3 C 0.225 3.775 4 C -0.515 4.515 5 H 0.128 0.872 6 C -0.170 4.170 7 N -0.409 5.409 8 Si 0.795 3.205 9 H -0.158 1.158 10 H -0.179 1.179 11 H -0.213 1.213 12 C -0.327 4.327 13 C 0.049 3.951 14 N -0.256 5.256 15 C -0.063 4.063 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.142 4.142 20 C -0.040 4.040 21 H 0.090 0.910 22 H 0.112 0.888 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.157 0.843 27 H 0.171 0.829 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.253 -6.101 -1.615 9.614 hybrid contribution 0.142 0.858 0.122 0.878 sum -7.111 -5.243 -1.492 8.960 Atomic orbital electron populations 1.21903 0.75852 1.04490 1.03047 1.44407 1.06541 1.03339 1.66335 1.17828 0.86855 0.86464 0.86324 1.18973 1.11836 0.89993 1.30694 0.87175 1.26739 0.92330 1.06044 0.91910 1.69659 1.18341 1.38666 1.14276 0.85240 0.79125 0.75637 0.80506 1.15808 1.17927 1.21305 1.16157 0.87845 0.88809 1.39892 1.24740 0.90885 0.90592 0.88907 1.80846 1.13903 1.11150 1.19703 1.19103 0.93746 0.91287 1.02130 1.20287 0.96906 0.93364 1.05393 1.20761 0.97591 0.94259 1.02664 1.20982 0.91488 0.99670 1.03456 1.20329 1.00732 0.88024 1.05136 1.18536 0.89358 0.89148 1.06941 0.91048 0.88833 0.90080 0.89909 0.88579 0.84275 0.82903 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.57 10.76 127.77 1.38 3.95 15 2 N -0.52 -21.47 3.21 -529.40 -1.70 -23.17 15 3 C 0.34 16.69 6.28 39.16 0.25 16.94 15 4 C -0.48 -23.11 8.41 23.07 0.19 -22.91 15 5 H 0.11 4.71 7.94 -2.91 -0.02 4.68 15 6 C 0.05 2.55 4.67 85.48 0.40 2.95 15 7 N -0.79 -41.61 10.82 21.95 0.24 -41.37 15 8 Si 0.97 37.51 29.61 68.60 2.03 39.54 15 9 H -0.24 -8.23 7.11 99.48 0.71 -7.52 15 10 H -0.26 -9.11 7.11 99.48 0.71 -8.40 15 11 H -0.29 -11.96 7.11 99.48 0.71 -11.26 15 12 C -0.32 -16.93 5.90 -19.10 -0.11 -17.04 15 13 C 0.35 20.14 12.72 88.33 1.12 21.26 15 14 N -0.57 -33.08 18.51 19.00 0.35 -32.72 15 15 C -0.06 -2.70 6.31 -20.03 -0.13 -2.83 15 16 C -0.14 -5.87 10.06 22.29 0.22 -5.64 15 17 C -0.13 -4.38 9.98 22.04 0.22 -4.16 15 18 C -0.14 -4.00 10.02 22.34 0.22 -3.78 15 19 C -0.12 -3.91 9.87 22.40 0.22 -3.69 15 20 C 0.06 2.57 6.78 39.02 0.26 2.83 15 21 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 22 H 0.09 2.19 7.93 -2.39 -0.02 2.17 15 23 H 0.08 2.37 7.69 -2.38 -0.02 2.35 15 24 H 0.29 14.60 8.29 -92.71 -0.77 13.83 15 25 H 0.10 4.05 8.06 -2.91 -0.02 4.02 15 26 H 0.14 3.60 8.06 -2.91 -0.02 3.58 15 27 H 0.15 3.16 8.06 -2.91 -0.02 3.14 15 28 H 0.14 3.49 7.94 -2.91 -0.02 3.47 15 Total: -1.00 -64.34 257.33 6.36 -57.99 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.18 Total: 11.86 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.25 Total: -12.12 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -1.11 Total: -97.27 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -64.34 6.36 -57.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261193294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.166 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds