Wall clock time and date at job start Mon Mar 30 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47293 * 2 1 4 4 H 1.08998 * 109.47441 * 305.71508 * 3 2 1 5 5 C 1.50701 * 109.47094 * 65.71895 * 3 2 1 6 6 H 1.07998 * 120.00322 * 27.88051 * 5 3 2 7 7 C 1.37887 * 119.99567 * 207.88271 * 5 3 2 8 8 N 1.31514 * 120.00280 * 6.35024 * 7 5 3 9 9 Si 1.86801 * 119.99782 * 186.34688 * 7 5 3 10 10 H 1.48498 * 109.47151 * 60.00014 * 9 7 5 11 11 H 1.48495 * 109.47161 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47251 * 300.00182 * 9 7 5 13 13 C 1.50707 * 109.47313 * 185.71380 * 3 2 1 14 14 C 1.38413 * 120.02436 * 119.99452 * 13 3 2 15 15 F 1.35102 * 120.01533 * 359.96277 * 14 13 3 16 16 C 1.38471 * 119.97725 * 179.97438 * 14 13 3 17 17 C 1.38216 * 120.02109 * 0.28293 * 16 14 13 18 18 C 1.38201 * 120.04695 * 359.44368 * 17 16 14 19 19 C 1.38418 * 120.02511 * 299.98308 * 13 3 2 20 20 F 1.35099 * 120.01279 * 359.97438 * 19 13 3 21 21 H 1.08997 * 109.47820 * 174.10660 * 1 2 3 22 22 H 1.09009 * 109.47371 * 294.11164 * 1 2 3 23 23 H 1.09004 * 109.47005 * 54.10336 * 1 2 3 24 24 H 1.08999 * 109.47382 * 239.99691 * 2 1 3 25 25 H 1.09008 * 109.46847 * 119.99828 * 2 1 3 26 26 H 0.96991 * 120.00110 * 179.97438 * 8 7 5 27 27 H 1.07997 * 119.99269 * 180.02562 * 16 14 13 28 28 H 1.08000 * 119.96968 * 179.70115 * 17 16 14 29 29 H 1.08005 * 119.98717 * 180.25673 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5956 1.9850 -0.8344 5 6 1.6566 2.1108 1.2951 6 1 1.5284 1.5204 2.1903 7 6 1.4695 3.4763 1.3372 8 7 1.5022 4.1791 0.2261 9 14 1.1693 4.3279 2.9725 10 1 2.3288 4.0968 3.8710 11 1 0.9996 5.7858 2.7475 12 1 -0.0597 3.7778 3.5989 13 6 3.5404 1.4448 -0.1415 14 6 4.1334 2.0791 -1.2193 15 9 3.3674 2.6959 -2.1457 16 6 5.5122 2.0811 -1.3481 17 6 6.2958 1.4450 -0.4038 18 6 5.7050 0.8162 0.6758 19 6 4.3265 0.8128 0.8065 20 9 3.7490 0.1940 1.8595 21 1 -0.3634 -1.0222 -0.1055 22 1 -0.3634 0.4198 0.9381 23 1 -0.3633 0.6026 -0.8325 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.3702 5.1395 0.2556 27 1 5.9751 2.5763 -2.1888 28 1 7.3708 1.4430 -0.5076 29 1 6.3185 0.3230 1.4153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261283418.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:41 Heat of formation + Delta-G solvation = -83.853289 kcal Electronic energy + Delta-G solvation = -15903.928417 eV Core-core repulsion = 13041.395266 eV Total energy + Delta-G solvation = -2862.533152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.01667 -47.93877 -38.08933 -34.97807 -31.86224 -30.16398 -29.50881 -26.49829 -23.88417 -22.07451 -21.54598 -19.62035 -17.28805 -16.91316 -15.86346 -15.12722 -14.96028 -14.66336 -14.50955 -14.26091 -13.55300 -13.29748 -13.17208 -12.51093 -11.96954 -11.58161 -11.38789 -11.29429 -11.05924 -10.96606 -10.90888 -10.43916 -10.23854 -9.85103 -9.38050 -9.07323 -8.47157 -7.99047 -7.76552 -6.05695 -4.09104 1.74577 1.88452 3.30942 3.35545 3.38990 4.16454 4.41767 4.84139 5.21917 5.23685 5.33922 5.53438 5.69004 5.92352 6.16014 6.22504 6.36341 6.52842 6.65367 6.76484 6.77029 6.87512 6.98022 7.01780 7.18719 7.29844 7.66441 7.75768 7.89428 8.31143 8.97785 9.53574 11.01598 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.012408 C = 0.011751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.332879 B = 2256.087727 C = 2382.143588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 C 0.064 3.936 4 H 0.073 0.927 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.878 5.878 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.094 4.094 14 C 0.123 3.877 15 F -0.127 7.127 16 C -0.177 4.177 17 C -0.098 4.098 18 C -0.179 4.179 19 C 0.127 3.873 20 F -0.129 7.129 21 H 0.030 0.970 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.263 0.737 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -5.249 -1.652 8.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.149 4.149 3 C 0.046 3.954 4 H 0.091 0.909 5 C -0.542 4.542 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.514 5.514 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.096 4.096 14 C 0.103 3.897 15 F -0.105 7.105 16 C -0.196 4.196 17 C -0.116 4.116 18 C -0.198 4.198 19 C 0.108 3.892 20 F -0.107 7.107 21 H 0.049 0.951 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.125 -5.047 -1.723 8.121 hybrid contribution -0.207 0.774 0.960 1.251 sum 5.918 -4.273 -0.762 7.339 Atomic orbital electron populations 1.21558 0.96313 0.98545 1.02413 1.21579 0.95862 0.98177 0.99296 1.18040 0.84322 0.92578 1.00480 0.90852 1.20938 1.46692 0.91964 0.94559 0.92092 1.25043 0.94677 0.97783 0.96224 1.69949 1.48349 1.07074 1.26045 0.86706 0.78906 0.78404 0.84394 1.20169 1.21280 1.20064 1.21022 1.01587 0.95494 0.91516 1.17279 0.87983 0.96111 0.88294 1.91491 1.75582 1.80202 1.63262 1.21032 0.92118 1.04481 1.01952 1.20455 0.99160 0.98205 0.93804 1.21015 0.93057 1.05026 1.00750 1.17193 0.90012 0.96320 0.85691 1.91441 1.85064 1.79858 1.54382 0.95138 0.92033 0.93513 0.95047 0.92737 0.92735 0.85557 0.85511 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.64 37.16 0.36 -2.26 15 2 C -0.11 -2.41 5.09 -26.74 -0.14 -2.55 15 3 C 0.06 1.60 1.89 -92.92 -0.18 1.42 15 4 H 0.07 2.02 6.42 -51.93 -0.33 1.69 15 5 C -0.50 -13.58 6.43 -34.44 -0.22 -13.81 15 6 H 0.06 1.66 7.72 -52.49 -0.41 1.25 15 7 C 0.07 1.83 5.45 -17.82 -0.10 1.73 15 8 N -0.88 -25.17 12.87 55.43 0.71 -24.46 15 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 15 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 13 C -0.09 -2.17 4.78 -104.49 -0.50 -2.67 15 14 C 0.12 2.69 7.24 -39.43 -0.29 2.40 15 15 F -0.13 -2.97 16.19 2.25 0.04 -2.93 15 16 C -0.18 -3.14 10.03 -39.50 -0.40 -3.53 15 17 C -0.10 -1.55 10.04 -39.60 -0.40 -1.95 15 18 C -0.18 -3.12 10.02 -39.51 -0.40 -3.51 15 19 C 0.13 2.70 6.81 -39.43 -0.27 2.43 15 20 F -0.13 -2.81 14.37 2.25 0.03 -2.78 15 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.06 1.29 7.60 -51.92 -0.39 0.90 15 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.03 0.63 8.14 -51.93 -0.42 0.20 15 25 H 0.05 1.17 6.48 -51.92 -0.34 0.83 15 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 27 H 0.13 1.89 8.06 -52.49 -0.42 1.47 15 28 H 0.13 1.51 8.06 -52.49 -0.42 1.09 15 29 H 0.13 1.82 8.06 -52.48 -0.42 1.40 15 LS Contribution 256.85 15.07 3.87 3.87 Total: -1.00 -28.67 256.85 -6.03 -34.69 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.14 Total: -2.53 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -2.52 Total: -22.29 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.71 Total: -24.46 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.07 Total: -5.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.67 -6.03 -34.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261283418.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.160 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds