Wall clock time and date at job start Mon Mar 30 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47293 * 2 1 4 4 H 1.08998 * 109.47441 * 305.71508 * 3 2 1 5 5 C 1.50701 * 109.47094 * 65.71895 * 3 2 1 6 6 H 1.07998 * 120.00322 * 27.88051 * 5 3 2 7 7 C 1.37887 * 119.99567 * 207.88271 * 5 3 2 8 8 N 1.31514 * 120.00280 * 6.35024 * 7 5 3 9 9 Si 1.86801 * 119.99782 * 186.34688 * 7 5 3 10 10 H 1.48498 * 109.47151 * 60.00014 * 9 7 5 11 11 H 1.48495 * 109.47161 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47251 * 300.00182 * 9 7 5 13 13 C 1.50707 * 109.47313 * 185.71380 * 3 2 1 14 14 C 1.38413 * 120.02436 * 119.99452 * 13 3 2 15 15 F 1.35102 * 120.01533 * 359.96277 * 14 13 3 16 16 C 1.38471 * 119.97725 * 179.97438 * 14 13 3 17 17 C 1.38216 * 120.02109 * 0.28293 * 16 14 13 18 18 C 1.38201 * 120.04695 * 359.44368 * 17 16 14 19 19 C 1.38418 * 120.02511 * 299.98308 * 13 3 2 20 20 F 1.35099 * 120.01279 * 359.97438 * 19 13 3 21 21 H 1.08997 * 109.47820 * 174.10660 * 1 2 3 22 22 H 1.09009 * 109.47371 * 294.11164 * 1 2 3 23 23 H 1.09004 * 109.47005 * 54.10336 * 1 2 3 24 24 H 1.08999 * 109.47382 * 239.99691 * 2 1 3 25 25 H 1.09008 * 109.46847 * 119.99828 * 2 1 3 26 26 H 0.96991 * 120.00110 * 179.97438 * 8 7 5 27 27 H 1.07997 * 119.99269 * 180.02562 * 16 14 13 28 28 H 1.08000 * 119.96968 * 179.70115 * 17 16 14 29 29 H 1.08005 * 119.98717 * 180.25673 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5956 1.9850 -0.8344 5 6 1.6566 2.1108 1.2951 6 1 1.5284 1.5204 2.1903 7 6 1.4695 3.4763 1.3372 8 7 1.5022 4.1791 0.2261 9 14 1.1693 4.3279 2.9725 10 1 2.3288 4.0968 3.8710 11 1 0.9996 5.7858 2.7475 12 1 -0.0597 3.7778 3.5989 13 6 3.5404 1.4448 -0.1415 14 6 4.1334 2.0791 -1.2193 15 9 3.3674 2.6959 -2.1457 16 6 5.5122 2.0811 -1.3481 17 6 6.2958 1.4450 -0.4038 18 6 5.7050 0.8162 0.6758 19 6 4.3265 0.8128 0.8065 20 9 3.7490 0.1940 1.8595 21 1 -0.3634 -1.0222 -0.1055 22 1 -0.3634 0.4198 0.9381 23 1 -0.3633 0.6026 -0.8325 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.3702 5.1395 0.2556 27 1 5.9751 2.5763 -2.1888 28 1 7.3708 1.4430 -0.5076 29 1 6.3185 0.3230 1.4153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261283418.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:41 Heat of formation + Delta-G solvation = -98.971167 kcal Electronic energy + Delta-G solvation = -15904.583978 eV Core-core repulsion = 13041.395266 eV Total energy + Delta-G solvation = -2863.188712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.63453 -49.63199 -39.60991 -36.75565 -33.87006 -31.73384 -30.97496 -28.35271 -25.75897 -23.60888 -23.09072 -21.41662 -18.96285 -18.70987 -17.55300 -16.73274 -16.60409 -16.38821 -16.25595 -15.94562 -15.22360 -15.00027 -14.74287 -14.39174 -13.43590 -13.40461 -13.02893 -12.95074 -12.82361 -12.64613 -12.57327 -12.30118 -12.00900 -11.56034 -11.22159 -11.02297 -10.54578 -9.48204 -9.37883 -8.12837 -6.21928 0.24542 0.40648 1.37792 1.38975 1.46426 2.39949 2.68396 3.16577 3.35175 3.75874 4.01678 4.08606 4.20802 4.43568 4.44452 4.63272 4.72836 5.07249 5.08781 5.19923 5.28134 5.32339 5.35617 5.39370 5.46566 5.57508 5.71939 5.85802 6.13387 6.30183 6.89261 7.42769 8.93540 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.012408 C = 0.011751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.332879 B = 2256.087727 C = 2382.143588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 C 0.064 3.936 4 H 0.034 0.966 5 C -0.507 4.507 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.269 1.269 13 C -0.128 4.128 14 C 0.087 3.913 15 F -0.148 7.148 16 C -0.167 4.167 17 C -0.076 4.076 18 C -0.166 4.166 19 C 0.101 3.899 20 F -0.140 7.140 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.260 0.740 27 H 0.157 0.843 28 H 0.183 0.817 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 -5.992 -1.098 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.045 3.955 4 H 0.052 0.948 5 C -0.544 4.544 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.130 4.130 14 C 0.068 3.932 15 F -0.126 7.126 16 C -0.186 4.186 17 C -0.093 4.093 18 C -0.185 4.185 19 C 0.082 3.918 20 F -0.119 7.119 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.175 0.825 28 H 0.200 0.800 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.466 -5.806 -1.163 10.331 hybrid contribution -0.834 0.922 0.740 1.447 sum 7.632 -4.884 -0.423 9.071 Atomic orbital electron populations 1.21508 0.95334 1.00388 1.01079 1.21531 0.96765 0.96516 0.99743 1.17868 0.86216 0.93513 0.97885 0.94761 1.21114 1.46170 0.92147 0.95015 0.92964 1.25726 0.95007 0.98527 0.99033 1.70089 1.50136 1.06911 1.27696 0.85820 0.78907 0.77439 0.80843 1.19958 1.21020 1.19350 1.20894 1.00587 0.98003 0.93549 1.17757 0.89732 0.97271 0.88444 1.91431 1.76487 1.80812 1.63918 1.21457 0.90235 1.03734 1.03195 1.21102 1.01560 0.95101 0.91585 1.21483 0.91420 1.03883 1.01689 1.17526 0.91614 0.97262 0.85394 1.91404 1.85555 1.80158 1.54788 0.91661 0.93609 0.94539 0.93897 0.92722 0.93111 0.82510 0.80024 0.81917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.64 71.98 0.69 -4.40 15 2 C -0.11 -4.75 5.09 30.59 0.16 -4.59 15 3 C 0.06 3.29 1.89 -12.29 -0.02 3.26 15 4 H 0.03 2.00 6.42 -2.39 -0.02 1.98 15 5 C -0.51 -28.07 6.43 25.60 0.16 -27.90 15 6 H 0.05 2.91 7.72 -2.91 -0.02 2.89 15 7 C 0.02 0.96 5.45 84.66 0.46 1.42 15 8 N -0.91 -54.02 12.87 21.45 0.28 -53.75 15 9 Si 0.94 44.69 29.54 68.60 2.03 46.71 15 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 15 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 15 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 13 C -0.13 -5.99 4.78 -19.78 -0.09 -6.08 15 14 C 0.09 3.81 7.24 22.37 0.16 3.98 15 15 F -0.15 -7.15 16.19 44.97 0.73 -6.42 15 16 C -0.17 -5.44 10.03 22.32 0.22 -5.22 15 17 C -0.08 -2.01 10.04 22.26 0.22 -1.79 15 18 C -0.17 -5.12 10.02 22.32 0.22 -4.90 15 19 C 0.10 4.18 6.81 22.37 0.15 4.33 15 20 F -0.14 -6.06 14.37 44.97 0.65 -5.42 15 21 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.04 1.96 7.60 -2.38 -0.02 1.94 15 23 H 0.04 1.51 8.14 -2.38 -0.02 1.49 15 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.05 2.37 6.48 -2.38 -0.02 2.36 15 26 H 0.26 14.82 8.31 -92.71 -0.77 14.05 15 27 H 0.16 4.08 8.06 -2.91 -0.02 4.05 15 28 H 0.18 2.93 8.06 -2.91 -0.02 2.91 15 29 H 0.16 3.82 8.06 -2.91 -0.02 3.80 15 Total: -1.00 -64.80 256.85 7.17 -57.63 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: 1.15 Total: 3.13 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 2.34 Total: -41.89 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.28 Total: -53.75 kcal Atomic # 9 Polarization: -13.21 SS G_CDS: 1.37 Total: -11.84 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.80 7.17 -57.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261283418.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.339 kcal (2) G-P(sol) polarization free energy of solvation -64.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds