Wall clock time and date at job start Mon Mar 30 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35484 * 124.69938 * 2 1 4 4 C 1.38990 * 109.33382 * 180.02562 * 3 2 1 5 5 C 1.40939 * 126.91572 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99943 * 180.02562 * 5 4 3 7 7 C 1.39736 * 119.99795 * 0.02798 * 5 4 3 8 8 N 1.31045 * 120.00307 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99782 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46950 * 60.00013 * 9 7 5 11 11 H 1.48499 * 109.46873 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47038 * 299.99916 * 9 7 5 13 13 C 1.47576 * 106.17060 * 0.02562 * 4 3 2 14 14 C 1.39407 * 133.61141 * 180.02562 * 13 4 3 15 15 C 1.36504 * 120.00916 * 179.24427 * 14 13 4 16 16 C 1.40079 * 120.24628 * 0.62265 * 15 14 13 17 17 C 1.43197 * 119.86241 * 179.61699 * 16 15 14 18 18 N 6.01432 * 99.22801 * 179.69390 * 2 1 3 19 19 C 1.39393 * 120.27286 * 359.58754 * 16 15 14 20 20 C 1.38220 * 124.69464 * 179.70668 * 2 1 3 21 21 H 1.09002 * 109.47391 * 90.02115 * 1 2 3 22 22 H 1.09001 * 109.46813 * 330.02171 * 1 2 3 23 23 H 1.09004 * 109.47041 * 210.02298 * 1 2 3 24 24 H 1.08000 * 125.33182 * 0.02562 * 3 2 1 25 25 H 0.97001 * 120.00503 * 179.97438 * 8 7 5 26 26 H 1.08005 * 119.99439 * 359.94140 * 14 13 4 27 27 H 1.08004 * 119.87907 * 180.19041 * 15 14 13 28 28 H 1.08007 * 120.14082 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2363 1.1139 0.0000 4 6 3.5765 0.7456 -0.0006 5 6 4.6913 1.6078 -0.0013 6 1 5.6907 1.1983 -0.0021 7 6 4.5036 2.9925 -0.0008 8 7 3.2910 3.4894 -0.0003 9 14 5.9813 4.1354 -0.0010 10 1 6.8007 3.8848 -1.2139 11 1 5.5163 5.5457 -0.0011 12 1 6.8015 3.8842 1.2111 13 6 3.5972 -0.7300 -0.0016 14 6 4.6200 -1.6773 -0.0021 15 6 4.3177 -3.0084 0.0126 16 6 2.9814 -3.4285 0.0149 17 6 2.6736 -4.8270 0.0220 18 7 2.4295 -5.9364 0.0317 19 6 1.9500 -2.4908 0.0110 20 6 2.2517 -1.1364 0.0058 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 1.8674 2.1290 0.0004 25 1 3.1607 4.4506 0.0004 26 1 5.6517 -1.3580 -0.0026 27 1 5.1117 -3.7405 0.0153 28 1 0.9204 -2.8171 0.0124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292922.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:27 Heat of formation + Delta-G solvation = 66.134193 kcal Electronic energy + Delta-G solvation = -14227.113985 eV Core-core repulsion = 11821.773965 eV Total energy + Delta-G solvation = -2405.340020 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.59251 -38.49917 -36.78027 -35.61830 -33.12733 -31.10765 -29.93757 -28.47120 -25.67735 -23.90236 -22.58896 -21.23654 -19.37047 -18.22845 -17.38055 -16.70472 -16.08247 -15.83183 -15.40277 -14.83848 -14.77399 -14.60296 -14.29205 -13.64678 -13.50224 -13.40051 -13.10139 -12.92055 -12.86009 -12.57151 -11.98879 -11.76492 -11.62529 -11.44413 -11.14561 -10.16437 -8.75710 -8.48630 -8.36972 -5.93502 0.00342 0.79460 1.46365 1.47760 1.57417 1.68836 2.04373 2.32404 2.38190 2.48328 3.09215 3.13384 3.66011 4.06581 4.21143 4.32803 4.58613 4.59335 4.62980 4.77541 4.94072 4.95965 5.28456 5.36407 5.50210 5.71874 5.87931 5.93776 6.17087 6.48831 6.55117 6.76187 7.07487 7.19420 7.27085 8.61423 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.037258 B = 0.007532 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.333422 B = 3716.423072 C = 4452.592081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.481 5.481 3 C -0.082 4.082 4 C -0.028 4.028 5 C -0.451 4.451 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.859 5.859 9 Si 0.984 3.016 10 H -0.266 1.266 11 H -0.275 1.275 12 H -0.266 1.266 13 C -0.137 4.137 14 C -0.068 4.068 15 C -0.126 4.126 16 C -0.037 4.037 17 C 0.296 3.704 18 N -0.474 5.474 19 C -0.074 4.074 20 C 0.065 3.935 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.181 0.819 25 H 0.279 0.721 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 -3.203 0.078 3.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.164 5.164 3 C -0.207 4.207 4 C -0.033 4.033 5 C -0.484 4.484 6 H 0.089 0.911 7 C -0.193 4.193 8 N -0.490 5.490 9 Si 0.807 3.193 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.191 1.191 13 C -0.144 4.144 14 C -0.086 4.086 15 C -0.148 4.148 16 C -0.042 4.042 17 C -0.017 4.017 18 N -0.151 5.151 19 C -0.098 4.098 20 C -0.044 4.044 21 H 0.088 0.912 22 H 0.101 0.899 23 H 0.110 0.890 24 H 0.197 0.803 25 H 0.090 0.910 26 H 0.144 0.856 27 H 0.163 0.837 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.098 -4.591 0.091 5.539 hybrid contribution 0.563 1.307 -0.022 1.423 sum -2.535 -3.284 0.069 4.149 Atomic orbital electron populations 1.21986 0.76651 1.04438 1.03085 1.43666 1.06342 1.03812 1.62608 1.23303 0.90289 0.90384 1.16741 1.18553 0.93215 0.89119 1.02379 1.18979 0.93266 0.91076 1.45059 0.91090 1.26430 0.99470 0.99814 0.93606 1.69483 1.23080 1.14180 1.42288 0.85194 0.78092 0.76628 0.79413 1.19104 1.19998 1.19083 1.19927 0.93188 0.94476 1.06855 1.20164 0.98320 0.91555 0.98604 1.20468 0.94301 0.95284 1.04763 1.15401 0.94204 0.83306 1.11309 1.25656 0.91971 0.92354 0.91741 1.81190 1.09309 1.12605 1.11957 1.19936 0.98971 0.88178 1.02696 1.18173 0.90740 0.88361 1.07168 0.91170 0.89941 0.89032 0.80275 0.91048 0.85615 0.83721 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.25 10.97 127.77 1.40 3.65 15 2 N -0.48 -19.45 3.15 -536.07 -1.69 -21.14 15 3 C -0.08 -4.01 10.31 84.31 0.87 -3.14 15 4 C -0.03 -1.42 6.10 -19.97 -0.12 -1.55 15 5 C -0.45 -23.73 9.42 23.29 0.22 -23.51 15 6 H 0.07 3.58 7.84 -2.91 -0.02 3.56 15 7 C 0.01 0.70 5.49 85.17 0.47 1.17 15 8 N -0.86 -43.57 10.33 21.80 0.23 -43.35 15 9 Si 0.98 38.62 29.56 68.60 2.03 40.65 15 10 H -0.27 -10.23 7.11 99.48 0.71 -9.52 15 11 H -0.28 -10.37 7.11 99.48 0.71 -9.66 15 12 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 13 C -0.14 -6.14 6.33 -19.97 -0.13 -6.26 15 14 C -0.07 -2.56 10.02 22.15 0.22 -2.34 15 15 C -0.13 -3.96 9.68 22.31 0.22 -3.75 15 16 C -0.04 -1.17 5.74 -21.31 -0.12 -1.29 15 17 C 0.30 9.06 15.31 88.33 1.35 10.41 15 18 N -0.47 -15.67 18.54 19.00 0.35 -15.31 15 19 C -0.07 -2.41 9.57 22.67 0.22 -2.20 15 20 C 0.07 2.61 6.77 38.83 0.26 2.87 15 21 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.08 2.18 8.13 -2.39 -0.02 2.16 15 23 H 0.09 2.08 7.93 -2.38 -0.02 2.06 15 24 H 0.18 9.20 5.67 -2.91 -0.02 9.18 15 25 H 0.28 13.04 8.30 -92.71 -0.77 12.27 15 26 H 0.13 4.45 8.06 -2.91 -0.02 4.42 15 27 H 0.15 3.67 8.06 -2.91 -0.02 3.64 15 28 H 0.14 3.72 7.94 -2.91 -0.02 3.69 15 Total: -1.00 -57.99 258.68 6.96 -51.03 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.18 Total: 14.04 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.86 Total: -25.93 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.11 Total: -79.80 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -57.99 6.96 -51.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292922.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.169 kcal (2) G-P(sol) polarization free energy of solvation -57.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds