Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47139 * 2 1 4 4 C 1.50705 * 109.47248 * 119.99687 * 2 1 3 5 5 H 1.07996 * 119.99877 * 119.99769 * 4 2 1 6 6 C 1.37879 * 120.00060 * 300.00275 * 4 2 1 7 7 N 1.31509 * 119.99989 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99917 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47083 * 89.99951 * 8 6 4 10 10 H 1.48495 * 109.46687 * 210.00154 * 8 6 4 11 11 H 1.48498 * 109.47063 * 329.99931 * 8 6 4 12 12 N 1.46504 * 109.47327 * 239.99918 * 2 1 3 13 13 C 1.39518 * 119.99837 * 84.99676 * 12 2 1 14 14 N 1.32372 * 120.49726 * 0.02562 * 13 12 2 15 15 N 1.28697 * 120.45890 * 179.97438 * 14 13 12 16 16 C 1.32233 * 121.57475 * 359.97438 * 15 14 13 17 17 O 1.35580 * 119.51371 * 180.02562 * 16 15 14 18 18 N 1.32644 * 120.97804 * 0.02562 * 16 15 14 19 19 C 1.32699 * 119.42491 * 0.02562 * 18 16 15 20 20 O 1.35597 * 120.72239 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.47270 * 299.99814 * 1 2 3 22 22 H 1.09003 * 109.47265 * 60.00076 * 1 2 3 23 23 H 1.09001 * 109.47139 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00191 * 179.97438 * 7 6 4 25 25 H 0.96996 * 119.99555 * 265.00181 * 12 2 1 26 26 H 0.96708 * 113.99894 * 269.98186 * 17 16 15 27 27 H 0.96698 * 114.00113 * 89.99413 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8491 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1516 0.0054 -2.3980 14 7 1.8400 1.2900 -2.4684 15 7 1.9636 1.9314 -3.5773 16 6 2.4019 1.3385 -4.6750 17 8 2.5164 2.0545 -5.8206 18 7 2.7311 0.0536 -4.6720 19 6 2.6178 -0.6458 -3.5500 20 8 2.9465 -1.9609 -3.5172 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9032 -0.5279 4.4376 25 1 2.2490 -1.6318 -1.1525 26 1 1.7200 2.0489 -6.3692 27 1 3.8715 -2.1297 -3.2915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307747982.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = 12.359790 kcal Electronic energy + Delta-G solvation = -15407.424958 eV Core-core repulsion = 12588.903842 eV Total energy + Delta-G solvation = -2818.521116 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.085 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.64586 -38.31894 -37.41074 -36.33668 -33.87857 -32.96243 -30.98947 -28.75852 -25.36971 -25.11571 -23.93562 -21.02675 -19.78019 -18.96107 -18.39839 -17.67034 -16.21277 -15.97153 -15.59778 -15.32691 -13.95848 -13.70925 -13.23515 -12.97090 -12.43291 -12.30834 -12.28031 -11.83691 -11.74002 -11.33539 -11.16021 -10.85881 -10.48771 -10.23881 -9.70272 -9.36236 -9.01954 -8.80126 -7.61756 -6.31343 -4.36161 0.55968 1.04331 2.87322 3.17214 3.22167 3.30127 3.32620 3.40904 3.61009 4.22510 4.38714 4.74567 5.03103 5.21028 5.57127 6.15190 6.23474 6.39145 6.57590 6.75965 7.01546 7.18830 7.29103 7.35388 7.43423 7.92244 8.24775 8.64049 8.78547 9.27203 10.80415 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.042169 B = 0.007701 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.836028 B = 3635.237505 C = 4094.571086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.239 3.761 3 H 0.056 0.944 4 C -0.541 4.541 5 H 0.081 0.919 6 C 0.082 3.918 7 N -0.888 5.888 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.258 1.258 12 N -0.654 5.654 13 C 0.291 3.709 14 N -0.229 5.229 15 N -0.235 5.235 16 C 0.363 3.637 17 O -0.453 6.453 18 N -0.473 5.473 19 C 0.297 3.703 20 O -0.464 6.464 21 H 0.052 0.948 22 H 0.036 0.964 23 H 0.054 0.946 24 H 0.269 0.731 25 H 0.414 0.586 26 H 0.401 0.599 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 0.742 -12.520 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.579 4.579 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.183 1.183 12 N -0.283 5.283 13 C 0.040 3.960 14 N -0.094 5.094 15 N -0.093 5.093 16 C 0.054 3.946 17 O -0.252 6.252 18 N -0.213 5.213 19 C 0.087 3.913 20 O -0.269 6.269 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.252 0.748 26 H 0.258 0.742 27 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.889 1.868 -12.237 12.411 hybrid contribution -0.231 -0.651 0.032 0.692 sum -1.120 1.217 -12.205 12.317 Atomic orbital electron populations 1.22491 0.98880 1.01143 0.99613 1.19354 0.90455 0.94765 0.81895 0.92589 1.20942 1.33885 1.14760 0.88323 0.90066 1.24804 0.95361 0.96749 0.95385 1.69851 1.44482 1.39959 0.98152 0.86894 0.80529 0.83468 0.77817 1.20176 1.21990 1.18271 1.45299 1.65050 1.12588 1.05321 1.21286 0.93937 0.92144 0.88657 1.73801 1.17185 1.03693 1.14722 1.73200 1.09371 1.30793 0.95932 1.21160 1.00199 0.84399 0.88823 1.84844 1.41560 1.68934 1.29852 1.67718 1.16043 1.07915 1.29627 1.19484 0.99187 0.85574 0.87028 1.84804 1.33871 1.16552 1.91721 0.92990 0.94466 0.92647 0.92076 0.74813 0.74176 0.73506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.98 37.16 0.33 -3.07 15 2 C 0.24 5.24 2.19 -69.08 -0.15 5.09 15 3 H 0.06 1.33 6.64 -51.93 -0.34 0.98 15 4 C -0.54 -13.80 9.31 -34.44 -0.32 -14.12 15 5 H 0.08 2.18 7.98 -52.49 -0.42 1.76 15 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 15 7 N -0.89 -25.36 13.96 55.43 0.77 -24.59 15 8 Si 0.88 20.68 24.37 -169.99 -4.14 16.53 15 9 H -0.28 -6.25 6.87 56.52 0.39 -5.86 15 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 11 H -0.26 -5.91 6.53 56.52 0.37 -5.54 15 12 N -0.65 -11.98 5.23 -54.59 -0.29 -12.27 15 13 C 0.29 5.15 7.58 -154.10 -1.17 3.98 15 14 N -0.23 -4.43 10.54 31.48 0.33 -4.10 15 15 N -0.23 -4.24 11.56 29.17 0.34 -3.90 15 16 C 0.36 5.85 8.81 -91.04 -0.80 5.05 15 17 O -0.45 -5.90 13.64 -18.44 -0.25 -6.15 15 18 N -0.47 -7.58 10.58 -14.46 -0.15 -7.73 15 19 C 0.30 4.59 7.87 -16.40 -0.13 4.46 15 20 O -0.46 -5.72 12.92 -18.49 -0.24 -5.96 15 21 H 0.05 1.13 3.27 -51.93 -0.17 0.96 15 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 25 H 0.41 6.79 7.99 -40.82 -0.33 6.46 15 26 H 0.40 2.99 9.06 45.56 0.41 3.41 15 27 H 0.41 3.00 9.06 45.56 0.41 3.42 15 LS Contribution 242.11 15.07 3.65 3.65 Total: -1.00 -31.29 242.11 -2.78 -34.07 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -0.46 Total: 6.97 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.33 Total: 3.48 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 1.00 Total: -52.59 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.49 Total: -12.11 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.14 Total: 16.53 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.29 -2.78 -34.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307747982.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.430 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds