Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47139 * 2 1 4 4 C 1.50705 * 109.47248 * 119.99687 * 2 1 3 5 5 H 1.07996 * 119.99877 * 119.99769 * 4 2 1 6 6 C 1.37879 * 120.00060 * 300.00275 * 4 2 1 7 7 N 1.31509 * 119.99989 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99917 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47083 * 89.99951 * 8 6 4 10 10 H 1.48495 * 109.46687 * 210.00154 * 8 6 4 11 11 H 1.48498 * 109.47063 * 329.99931 * 8 6 4 12 12 N 1.46504 * 109.47327 * 239.99918 * 2 1 3 13 13 C 1.39518 * 119.99837 * 84.99676 * 12 2 1 14 14 N 1.32372 * 120.49726 * 0.02562 * 13 12 2 15 15 N 1.28697 * 120.45890 * 179.97438 * 14 13 12 16 16 C 1.32233 * 121.57475 * 359.97438 * 15 14 13 17 17 O 1.35580 * 119.51371 * 180.02562 * 16 15 14 18 18 N 1.32644 * 120.97804 * 0.02562 * 16 15 14 19 19 C 1.32699 * 119.42491 * 0.02562 * 18 16 15 20 20 O 1.35597 * 120.72239 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.47270 * 299.99814 * 1 2 3 22 22 H 1.09003 * 109.47265 * 60.00076 * 1 2 3 23 23 H 1.09001 * 109.47139 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00191 * 179.97438 * 7 6 4 25 25 H 0.96996 * 119.99555 * 265.00181 * 12 2 1 26 26 H 0.96708 * 113.99894 * 269.98186 * 17 16 15 27 27 H 0.96698 * 114.00113 * 89.99413 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8491 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1516 0.0054 -2.3980 14 7 1.8400 1.2900 -2.4684 15 7 1.9636 1.9314 -3.5773 16 6 2.4019 1.3385 -4.6750 17 8 2.5164 2.0545 -5.8206 18 7 2.7311 0.0536 -4.6720 19 6 2.6178 -0.6458 -3.5500 20 8 2.9465 -1.9609 -3.5172 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9032 -0.5279 4.4376 25 1 2.2490 -1.6318 -1.1525 26 1 1.7200 2.0489 -6.3692 27 1 3.8715 -2.1297 -3.2915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307747982.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -20.340127 kcal Electronic energy + Delta-G solvation = -15408.842933 eV Core-core repulsion = 12588.903842 eV Total energy + Delta-G solvation = -2819.939091 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.085 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.93167 -39.46980 -38.59990 -37.79149 -35.18580 -34.71943 -32.65962 -30.19332 -27.21141 -26.46071 -25.27727 -22.67108 -20.90654 -20.37434 -19.60900 -19.16013 -17.95699 -17.20910 -17.13216 -16.66372 -15.44906 -15.25638 -14.92237 -14.26622 -14.12606 -13.84761 -13.56090 -13.39817 -13.11275 -12.76158 -12.55075 -12.36777 -12.18486 -11.81985 -11.51586 -11.24934 -10.80192 -10.29245 -9.02807 -8.36399 -6.43400 -0.68835 -0.23764 1.32545 1.41201 1.49778 1.65494 2.02158 2.08640 2.29031 2.32141 3.00457 3.07685 3.58666 3.95421 4.41025 4.48916 4.60893 4.70952 4.96821 5.31063 5.45931 5.54531 5.74013 6.25920 6.33677 6.46019 6.50176 6.67195 7.22877 7.48060 8.78542 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.042169 B = 0.007701 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.836028 B = 3635.237505 C = 4094.571086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.249 3.751 3 H 0.040 0.960 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.031 3.969 7 N -0.934 5.934 8 Si 0.936 3.064 9 H -0.262 1.262 10 H -0.296 1.296 11 H -0.251 1.251 12 N -0.658 5.658 13 C 0.282 3.718 14 N -0.258 5.258 15 N -0.261 5.261 16 C 0.380 3.620 17 O -0.453 6.453 18 N -0.481 5.481 19 C 0.326 3.674 20 O -0.459 6.459 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.270 0.730 25 H 0.422 0.578 26 H 0.428 0.572 27 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 0.957 -14.357 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.144 3.856 3 H 0.058 0.942 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.169 4.169 7 N -0.573 5.573 8 Si 0.763 3.237 9 H -0.188 1.188 10 H -0.224 1.224 11 H -0.175 1.175 12 N -0.290 5.290 13 C 0.030 3.970 14 N -0.121 5.121 15 N -0.118 5.118 16 C 0.071 3.929 17 O -0.256 6.256 18 N -0.222 5.222 19 C 0.116 3.884 20 O -0.268 6.268 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.261 0.739 26 H 0.289 0.711 27 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -1.318 2.099 -14.144 14.359 hybrid contribution 0.009 -0.794 0.406 0.892 sum -1.310 1.305 -13.738 13.861 Atomic orbital electron populations 1.22393 0.97773 1.01650 0.99808 1.18952 0.91182 0.93602 0.81884 0.94194 1.21201 1.32556 1.13761 0.89795 0.92419 1.25533 0.96754 0.99367 0.95267 1.69969 1.46628 1.41936 0.98729 0.86050 0.79618 0.80438 0.77633 1.18781 1.22392 1.17487 1.44870 1.66543 1.12792 1.04768 1.21299 0.94700 0.92055 0.88911 1.73666 1.18095 1.04603 1.15750 1.73169 1.11345 1.31110 0.96222 1.21311 0.97869 0.84471 0.89262 1.84796 1.43384 1.68353 1.29057 1.67922 1.16869 1.07973 1.29392 1.19418 0.96793 0.86169 0.86021 1.84760 1.36092 1.14419 1.91558 0.93782 0.93143 0.92016 0.92063 0.73862 0.71073 0.70519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.33 8.98 71.98 0.65 -5.68 15 2 C 0.25 10.72 2.19 44.25 0.10 10.82 15 3 H 0.04 1.87 6.64 -2.39 -0.02 1.86 15 4 C -0.53 -27.39 9.31 25.60 0.24 -27.15 15 5 H 0.06 3.15 7.98 -2.91 -0.02 3.13 15 6 C 0.03 1.66 5.45 84.66 0.46 2.12 15 7 N -0.93 -54.24 13.96 21.45 0.30 -53.94 15 8 Si 0.94 42.36 24.37 68.60 1.67 44.04 15 9 H -0.26 -11.23 6.87 99.48 0.68 -10.54 15 10 H -0.30 -13.48 7.11 99.48 0.71 -12.77 15 11 H -0.25 -10.96 6.53 99.48 0.65 -10.32 15 12 N -0.66 -23.32 5.23 -326.63 -1.71 -25.03 15 13 C 0.28 9.50 7.58 133.18 1.01 10.51 15 14 N -0.26 -9.65 10.54 -54.33 -0.57 -10.22 15 15 N -0.26 -9.03 11.56 -174.56 -2.02 -11.05 15 16 C 0.38 11.34 8.81 180.50 1.59 12.93 15 17 O -0.45 -10.52 13.64 -88.88 -1.21 -11.73 15 18 N -0.48 -14.08 10.58 -425.07 -4.50 -18.58 15 19 C 0.33 9.24 7.87 85.06 0.67 9.91 15 20 O -0.46 -9.88 12.92 -89.07 -1.15 -11.03 15 21 H 0.04 1.82 3.27 -2.39 -0.01 1.81 15 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.06 2.35 8.14 -2.39 -0.02 2.34 15 24 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 25 H 0.42 13.31 7.99 -92.71 -0.74 12.57 15 26 H 0.43 5.00 9.06 -74.05 -0.67 4.33 15 27 H 0.43 4.91 9.06 -74.06 -0.67 4.24 15 Total: -1.00 -66.20 242.11 -5.38 -71.58 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -0.90 Total: 12.51 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 4.71 Total: 13.46 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -8.50 Total: -118.82 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -2.36 Total: -22.76 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.67 Total: 44.04 kcal Total: -66.20 -5.38 -71.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307747982.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.236 kcal (2) G-P(sol) polarization free energy of solvation -66.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds