Wall clock time and date at job start Mon Mar 30 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81397 * 109.47252 * 2 1 4 4 C 1.81400 * 103.00125 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47309 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47151 * 179.97438 * 5 4 3 7 7 C 1.36417 * 126.55507 * 265.02685 * 6 5 4 8 8 C 1.36219 * 107.19395 * 179.97438 * 7 6 5 9 9 N 1.32760 * 108.61786 * 0.26155 * 8 7 6 10 10 C 1.32988 * 109.22557 * 359.56535 * 9 8 7 11 11 C 1.39992 * 125.96482 * 180.17310 * 10 9 8 12 12 H 1.08003 * 119.99981 * 174.56154 * 11 10 9 13 13 C 1.40240 * 120.00195 * 354.56343 * 11 10 9 14 14 N 1.30691 * 119.99838 * 6.06697 * 13 11 10 15 15 Si 1.86797 * 120.00064 * 186.06552 * 13 11 10 16 16 H 1.48502 * 109.47038 * 94.98512 * 15 13 11 17 17 H 1.48503 * 109.47156 * 214.97914 * 15 13 11 18 18 H 1.48494 * 109.47439 * 334.98029 * 15 13 11 19 19 H 1.09003 * 109.46989 * 60.00561 * 1 2 3 20 20 H 1.09002 * 109.47173 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47595 * 300.00748 * 1 2 3 22 22 H 1.08998 * 109.47595 * 239.99252 * 2 1 3 23 23 H 1.09003 * 109.46989 * 119.99439 * 2 1 3 24 24 H 1.08992 * 109.47638 * 59.99584 * 4 3 2 25 25 H 1.09007 * 109.46842 * 299.99515 * 4 3 2 26 26 H 1.09002 * 109.46932 * 59.99799 * 5 4 3 27 27 H 1.08997 * 109.46423 * 299.99950 * 5 4 3 28 28 H 1.07996 * 126.40373 * 359.93529 * 7 6 5 29 29 H 1.07995 * 125.69533 * 179.97438 * 8 7 6 30 30 H 0.97001 * 119.99979 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.6065 2.8816 0.0002 6 7 6.0621 2.7165 0.0015 7 6 6.8793 2.7201 1.0938 8 6 8.1522 2.5354 0.6451 9 7 8.1237 2.4273 -0.6778 10 6 6.8661 2.5275 -1.0984 11 6 6.4362 2.4585 -2.4289 12 1 5.3804 2.4640 -2.6562 13 6 7.3764 2.3822 -3.4666 14 7 8.6472 2.2560 -3.1889 15 14 6.8125 2.4611 -5.2457 16 1 6.9122 3.8596 -5.7350 17 1 7.6742 1.5831 -6.0775 18 1 5.4030 2.0032 -5.3389 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 4.2407 0.9541 -0.8888 25 1 4.2398 0.9544 0.8911 26 1 4.3030 3.4337 0.8898 27 1 4.3037 3.4325 -0.8902 28 1 6.5742 2.8465 2.1220 29 1 9.0374 2.4896 1.2620 30 1 9.2977 2.2036 -3.9066 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308249465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:15 Heat of formation + Delta-G solvation = 45.526129 kcal Electronic energy + Delta-G solvation = -13200.764071 eV Core-core repulsion = 10929.974369 eV Total energy + Delta-G solvation = -2270.789702 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.86420 -33.80789 -33.27843 -32.85416 -28.98697 -28.61041 -24.92939 -24.04559 -22.49372 -19.88833 -19.21103 -16.81954 -16.11968 -15.58967 -15.07229 -14.72280 -14.26450 -14.14890 -13.52593 -12.83371 -12.60216 -12.46919 -12.07838 -11.79384 -11.58114 -11.33664 -11.16032 -11.07229 -10.85739 -10.43587 -10.10871 -9.88536 -9.19786 -8.00144 -7.76415 -7.57869 -7.04813 -6.39871 -4.27313 1.69561 2.67779 3.05339 3.16878 3.19703 3.65713 4.03273 4.46450 4.73714 4.83845 4.88717 5.17843 5.24287 5.30283 5.59962 5.67329 5.70791 5.72532 5.93579 5.98506 6.25199 6.34141 6.57952 7.15502 7.29690 7.61884 8.08075 8.23869 8.58968 8.97392 9.32299 10.25531 10.53768 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.023035 B = 0.008242 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.271146 B = 3396.513644 C = 4394.617171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 S -0.268 6.268 4 C -0.094 4.094 5 C 0.149 3.851 6 N -0.505 5.505 7 C -0.181 4.181 8 C -0.013 4.013 9 N -0.519 5.519 10 C 0.376 3.624 11 C -0.463 4.463 12 H 0.078 0.922 13 C 0.083 3.917 14 N -0.741 5.741 15 Si 0.908 3.092 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.264 1.264 19 H 0.064 0.936 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.907 -2.959 3.479 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.236 4.236 3 S -0.044 6.044 4 C -0.244 4.244 5 C 0.023 3.977 6 N -0.197 5.197 7 C -0.310 4.310 8 C -0.166 4.166 9 N -0.240 5.240 10 C 0.134 3.866 11 C -0.502 4.502 12 H 0.096 0.904 13 C -0.141 4.141 14 N -0.366 5.366 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.188 1.188 19 H 0.083 0.917 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.680 -2.155 2.974 12.243 hybrid contribution -0.179 -1.019 -0.077 1.037 sum -11.859 -3.173 2.897 12.613 Atomic orbital electron populations 1.21502 0.92394 1.02279 1.03113 1.23261 0.99884 0.95545 1.04957 1.86629 1.06652 1.12882 1.98188 1.23893 0.91489 1.03125 1.05850 1.20834 0.79991 0.93674 1.03203 1.45423 1.04377 1.62194 1.07672 1.21837 0.92249 1.25895 0.91021 1.22144 0.94358 1.06052 0.94015 1.71304 1.17248 1.28125 1.07362 1.20327 0.83786 0.94920 0.87615 1.18124 0.94058 1.50796 0.87215 0.90407 1.25695 0.94425 0.93485 1.00501 1.70025 1.01417 1.31701 1.33464 0.86326 0.79568 0.78827 0.82070 1.19638 1.20284 1.18775 0.91665 0.91314 0.91807 0.90013 0.90300 0.88946 0.90228 0.90676 0.89548 0.84796 0.84893 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.92 37.16 0.37 -0.88 16 2 C -0.09 -1.01 6.66 37.16 0.25 -0.76 16 3 S -0.27 -3.91 21.74 -107.50 -2.34 -6.25 16 4 C -0.09 -1.61 6.26 37.16 0.23 -1.38 16 5 C 0.15 2.86 5.84 -4.04 -0.02 2.84 16 6 N -0.51 -12.08 2.81 -115.97 -0.33 -12.40 16 7 C -0.18 -4.22 11.60 -16.24 -0.19 -4.41 16 8 C -0.01 -0.34 11.85 -17.88 -0.21 -0.55 16 9 N -0.52 -15.30 9.43 -12.72 -0.12 -15.42 16 10 C 0.38 10.52 7.43 -155.60 -1.16 9.37 16 11 C -0.46 -12.61 8.99 -38.17 -0.34 -12.95 16 12 H 0.08 1.97 7.38 -52.48 -0.39 1.59 16 13 C 0.08 2.20 5.49 -17.29 -0.09 2.10 16 14 N -0.74 -20.93 11.92 55.56 0.66 -20.26 16 15 Si 0.91 19.33 29.57 -169.99 -5.03 14.31 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 24 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 25 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.09 1.68 7.68 -51.93 -0.40 1.28 16 28 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 29 H 0.13 3.00 8.06 -52.49 -0.42 2.58 16 30 H 0.27 6.96 8.29 -40.82 -0.34 6.63 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -31.15 275.42 -8.31 -39.46 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.15 Total: 3.04 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.17 Total: -6.62 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.22 Total: -48.09 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.34 Total: -6.25 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.15 -8.31 -39.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308249465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.984 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds