Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81397 * 109.47252 * 2 1 4 4 C 1.81400 * 103.00125 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47309 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47151 * 179.97438 * 5 4 3 7 7 C 1.36417 * 126.55507 * 265.02685 * 6 5 4 8 8 C 1.36219 * 107.19395 * 179.97438 * 7 6 5 9 9 N 1.32760 * 108.61786 * 0.26155 * 8 7 6 10 10 C 1.32988 * 109.22557 * 359.56535 * 9 8 7 11 11 C 1.39992 * 125.96482 * 180.17310 * 10 9 8 12 12 H 1.08003 * 119.99981 * 174.56154 * 11 10 9 13 13 C 1.40240 * 120.00195 * 354.56343 * 11 10 9 14 14 N 1.30691 * 119.99838 * 6.06697 * 13 11 10 15 15 Si 1.86797 * 120.00064 * 186.06552 * 13 11 10 16 16 H 1.48502 * 109.47038 * 94.98512 * 15 13 11 17 17 H 1.48503 * 109.47156 * 214.97914 * 15 13 11 18 18 H 1.48494 * 109.47439 * 334.98029 * 15 13 11 19 19 H 1.09003 * 109.46989 * 60.00561 * 1 2 3 20 20 H 1.09002 * 109.47173 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47595 * 300.00748 * 1 2 3 22 22 H 1.08998 * 109.47595 * 239.99252 * 2 1 3 23 23 H 1.09003 * 109.46989 * 119.99439 * 2 1 3 24 24 H 1.08992 * 109.47638 * 59.99584 * 4 3 2 25 25 H 1.09007 * 109.46842 * 299.99515 * 4 3 2 26 26 H 1.09002 * 109.46932 * 59.99799 * 5 4 3 27 27 H 1.08997 * 109.46423 * 299.99950 * 5 4 3 28 28 H 1.07996 * 126.40373 * 359.93529 * 7 6 5 29 29 H 1.07995 * 125.69533 * 179.97438 * 8 7 6 30 30 H 0.97001 * 119.99979 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.6065 2.8816 0.0002 6 7 6.0621 2.7165 0.0015 7 6 6.8793 2.7201 1.0938 8 6 8.1522 2.5354 0.6451 9 7 8.1237 2.4273 -0.6778 10 6 6.8661 2.5275 -1.0984 11 6 6.4362 2.4585 -2.4289 12 1 5.3804 2.4640 -2.6562 13 6 7.3764 2.3822 -3.4666 14 7 8.6472 2.2560 -3.1889 15 14 6.8125 2.4611 -5.2457 16 1 6.9122 3.8596 -5.7350 17 1 7.6742 1.5831 -6.0775 18 1 5.4030 2.0032 -5.3389 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 4.2407 0.9541 -0.8888 25 1 4.2398 0.9544 0.8911 26 1 4.3030 3.4337 0.8898 27 1 4.3037 3.4325 -0.8902 28 1 6.5742 2.8465 2.1220 29 1 9.0374 2.4896 1.2620 30 1 9.2977 2.2036 -3.9066 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308249465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = 27.978040 kcal Electronic energy + Delta-G solvation = -13201.525013 eV Core-core repulsion = 10929.974369 eV Total energy + Delta-G solvation = -2271.550644 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.79958 -35.53750 -35.21859 -33.67998 -30.73758 -30.57885 -26.89321 -25.25314 -23.75389 -21.86699 -21.07436 -18.69239 -17.58313 -17.20226 -16.44679 -16.14463 -15.66213 -15.42534 -15.04496 -14.54998 -14.38968 -13.86949 -13.64040 -13.13726 -13.07967 -12.83138 -12.54659 -12.41123 -12.26733 -12.21590 -11.86785 -11.12228 -11.02668 -9.95554 -9.78949 -9.04654 -8.73991 -8.35401 -6.30909 0.51468 1.34652 1.42516 1.53150 1.57280 1.80295 2.25693 2.69478 2.75965 3.56465 3.71224 3.87633 3.99897 4.07111 4.26102 4.44381 4.50373 4.54030 4.72140 4.80675 4.86581 4.91063 5.18283 5.22185 5.35301 5.68170 6.13645 6.26535 6.66399 6.99228 7.35416 8.27608 8.61386 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.023035 B = 0.008242 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.271146 B = 3396.513644 C = 4394.617171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 S -0.271 6.271 4 C -0.085 4.085 5 C 0.146 3.854 6 N -0.505 5.505 7 C -0.153 4.153 8 C -0.055 4.055 9 N -0.567 5.567 10 C 0.343 3.657 11 C -0.489 4.489 12 H 0.086 0.914 13 C 0.033 3.967 14 N -0.791 5.791 15 Si 0.988 3.012 16 H -0.265 1.265 17 H -0.271 1.271 18 H -0.253 1.253 19 H 0.062 0.938 20 H 0.092 0.908 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.177 0.823 29 H 0.153 0.847 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 -3.246 3.707 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.233 4.233 3 S -0.046 6.046 4 C -0.234 4.234 5 C 0.022 3.978 6 N -0.195 5.195 7 C -0.284 4.284 8 C -0.205 4.205 9 N -0.289 5.289 10 C 0.098 3.902 11 C -0.528 4.528 12 H 0.104 0.896 13 C -0.186 4.186 14 N -0.417 5.417 15 Si 0.809 3.191 16 H -0.190 1.190 17 H -0.195 1.195 18 H -0.176 1.176 19 H 0.081 0.919 20 H 0.111 0.889 21 H 0.085 0.915 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.194 0.806 29 H 0.170 0.830 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.978 -2.439 3.234 14.553 hybrid contribution 0.431 -0.944 0.022 1.038 sum -13.547 -3.382 3.256 14.337 Atomic orbital electron populations 1.21519 0.90410 1.03847 1.03136 1.23438 1.01367 0.92996 1.05498 1.86625 1.03793 1.16039 1.98180 1.23571 0.93847 1.01275 1.04739 1.21078 0.77440 0.95229 1.04089 1.45653 1.06278 1.60754 1.06834 1.22463 0.91456 1.21964 0.92484 1.22610 0.96405 1.08174 0.93353 1.71179 1.18937 1.29293 1.09473 1.20599 0.84339 0.96351 0.88902 1.18495 0.94737 1.51826 0.87762 0.89597 1.26740 0.94215 0.92348 1.05321 1.70159 1.02938 1.33351 1.35249 0.85114 0.79455 0.79016 0.75545 1.19023 1.19535 1.17614 0.91917 0.88893 0.91503 0.90008 0.89307 0.91336 0.90017 0.88160 0.90186 0.80635 0.83007 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.92 71.98 0.71 -1.31 16 2 C -0.08 -1.74 6.66 71.98 0.48 -1.26 16 3 S -0.27 -7.39 21.74 -56.49 -1.23 -8.61 16 4 C -0.08 -2.82 6.26 71.98 0.45 -2.37 16 5 C 0.15 5.43 5.84 86.38 0.50 5.93 16 6 N -0.51 -23.93 2.81 -520.83 -1.46 -25.39 16 7 C -0.15 -6.95 11.60 83.51 0.97 -5.98 16 8 C -0.05 -2.82 11.85 84.08 1.00 -1.82 16 9 N -0.57 -34.32 9.43 -194.17 -1.83 -36.15 16 10 C 0.34 19.57 7.43 133.59 0.99 20.57 16 11 C -0.49 -27.20 8.99 23.18 0.21 -26.99 16 12 H 0.09 4.42 7.38 -2.91 -0.02 4.40 16 13 C 0.03 1.78 5.49 85.35 0.47 2.25 16 14 N -0.79 -46.05 11.92 21.88 0.26 -45.79 16 15 Si 0.99 40.02 29.57 68.60 2.03 42.04 16 16 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 17 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 19 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 20 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.08 3.07 7.68 -2.39 -0.02 3.06 16 28 H 0.18 6.35 8.06 -2.91 -0.02 6.33 16 29 H 0.15 6.89 8.06 -2.91 -0.02 6.86 16 30 H 0.28 14.60 8.29 -92.71 -0.77 13.83 16 Total: -1.00 -68.79 275.42 4.66 -64.13 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.11 Total: 20.76 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.78 Total: -10.99 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -3.03 Total: -107.33 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.23 Total: -8.61 kcal Total: -68.79 4.66 -64.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308249465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.105 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds