Wall clock time and date at job start Mon Mar 30 2020 02:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47118 * 2 1 4 4 C 1.50705 * 109.46557 * 240.00044 * 2 1 3 5 5 C 1.33643 * 122.74967 * 85.66381 * 4 2 1 6 6 S 1.76198 * 107.92502 * 179.97438 * 5 4 2 7 7 C 1.70980 * 90.28301 * 0.27649 * 6 5 4 8 8 N 1.29030 * 110.16541 * 359.83465 * 7 6 5 9 9 N 1.46896 * 109.47001 * 120.00552 * 2 1 3 10 10 C 1.46903 * 110.99889 * 304.39927 * 9 2 1 11 11 C 1.46905 * 110.99930 * 180.45222 * 9 2 1 12 12 C 1.50694 * 109.47046 * 189.99743 * 11 9 2 13 13 H 1.07997 * 120.00099 * 359.97438 * 12 11 9 14 14 C 1.37883 * 120.00080 * 179.97438 * 12 11 9 15 15 N 1.31505 * 120.00012 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99735 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47439 * 89.99855 * 16 14 12 18 18 H 1.48502 * 109.47382 * 209.99908 * 16 14 12 19 19 H 1.48507 * 109.47277 * 329.99963 * 16 14 12 20 20 H 1.09007 * 109.46857 * 59.99509 * 1 2 3 21 21 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46728 * 300.00236 * 1 2 3 23 23 H 1.08006 * 126.03527 * 0.03582 * 5 4 2 24 24 H 1.08001 * 124.91960 * 179.84063 * 7 6 5 25 25 H 1.08999 * 109.47162 * 303.08370 * 10 9 2 26 26 H 1.09003 * 109.46799 * 63.08030 * 10 9 2 27 27 H 1.09001 * 109.47128 * 183.08372 * 10 9 2 28 28 H 1.09004 * 109.46722 * 309.99555 * 11 9 2 29 29 H 1.09001 * 109.47433 * 69.99254 * 11 9 2 30 30 H 0.97006 * 119.99796 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1931 -0.0948 -2.4058 6 16 2.7935 -1.2812 -3.5618 7 6 2.7609 -2.4890 -2.3520 8 7 2.3428 -1.9911 -1.2375 9 7 2.0197 -0.6926 1.1993 10 6 1.4646 -0.0900 2.4187 11 6 3.4882 -0.7028 1.2387 12 6 3.9548 -1.6225 2.3375 13 1 3.2327 -2.1466 2.9461 14 6 5.3036 -1.7948 2.5660 15 7 5.7107 -2.5978 3.5246 16 14 6.5524 -0.8888 1.5130 17 1 6.8674 0.4219 2.1360 18 1 7.7930 -1.6985 1.4095 19 1 5.9898 -0.6696 0.1562 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.9915 0.9464 -2.6105 24 1 3.0487 -3.5195 -2.4993 25 1 1.7155 0.9704 2.4466 26 1 0.3809 -0.2071 2.4209 27 1 1.8855 -0.5861 3.2932 28 1 3.8748 -1.0543 0.2821 29 1 3.8536 0.3062 1.4297 30 1 6.6597 -2.7193 3.6851 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308257018.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:28 Heat of formation + Delta-G solvation = 37.555450 kcal Electronic energy + Delta-G solvation = -13825.313952 eV Core-core repulsion = 11554.178616 eV Total energy + Delta-G solvation = -2271.135336 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.03808 -38.21994 -34.86358 -32.89497 -30.64310 -29.03343 -27.42536 -25.72488 -23.66169 -22.13884 -20.29158 -19.17187 -18.45025 -17.02776 -16.62104 -16.23468 -15.62660 -15.41877 -14.76432 -14.45264 -14.25212 -14.07747 -13.57489 -13.46431 -13.13234 -12.77739 -12.51231 -12.33944 -12.10311 -11.84877 -11.72019 -11.41344 -10.79990 -10.35214 -10.28673 -9.64762 -8.94762 -8.28770 -6.29097 -0.13123 0.59697 0.84065 1.26638 1.29089 1.39829 1.98396 2.31055 3.03898 3.18496 3.48950 4.00739 4.30960 4.33019 4.44173 4.47146 4.59333 4.66237 4.83905 4.93177 4.96170 5.04307 5.19566 5.22172 5.36883 5.58523 6.01111 6.42826 6.65833 6.75470 7.06460 7.32769 8.88418 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.010776 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.973748 B = 2597.838382 C = 3351.570171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.142 3.858 3 H 0.054 0.946 4 C 0.057 3.943 5 C -0.261 4.261 6 S 0.149 5.851 7 C 0.003 3.997 8 N -0.477 5.477 9 N -0.533 5.533 10 C 0.037 3.963 11 C 0.184 3.816 12 C -0.504 4.504 13 H 0.037 0.963 14 C 0.008 3.992 15 N -0.948 5.948 16 Si 0.943 3.057 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.262 1.262 20 H 0.081 0.919 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.202 0.798 24 H 0.214 0.786 25 H 0.023 0.977 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.025 0.975 29 H -0.027 1.027 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 7.396 -15.740 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.031 3.969 3 H 0.072 0.928 4 C -0.075 4.075 5 C -0.400 4.400 6 S 0.401 5.599 7 C -0.295 4.295 8 N -0.190 5.190 9 N -0.257 5.257 10 C -0.111 4.111 11 C 0.057 3.943 12 C -0.542 4.542 13 H 0.055 0.945 14 C -0.188 4.188 15 N -0.589 5.589 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.186 1.186 20 H 0.100 0.900 21 H 0.068 0.932 22 H 0.094 0.906 23 H 0.219 0.781 24 H 0.231 0.769 25 H 0.042 0.958 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.043 0.957 29 H -0.009 1.009 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.750 6.470 -16.276 19.153 hybrid contribution 0.918 1.020 0.957 1.673 sum -6.832 7.490 -15.319 18.370 Atomic orbital electron populations 1.21797 0.91230 1.02305 1.03252 1.20370 0.96984 0.93406 0.86151 0.92796 1.20401 1.01642 0.89263 0.96172 1.27107 1.10893 1.06274 0.95771 1.83458 1.59865 1.01124 1.15407 1.28962 1.03396 1.06179 0.90948 1.66155 1.13138 1.13186 1.26534 1.61770 1.08660 1.53651 1.01597 1.22294 1.00165 0.96138 0.92540 1.19803 0.85454 0.92957 0.96123 1.21234 0.92009 1.25522 1.15464 0.94490 1.25759 1.00429 0.96165 0.96478 1.70043 1.15897 1.39525 1.33476 0.85779 0.78534 0.79071 0.79904 1.18961 1.20294 1.18642 0.89980 0.93215 0.90634 0.78106 0.76928 0.95815 0.89782 0.93443 0.95655 1.00936 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.80 71.98 0.63 -2.78 16 2 C 0.14 4.88 2.42 44.17 0.11 4.99 16 3 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 4 C 0.06 1.97 4.63 41.52 0.19 2.16 16 5 C -0.26 -6.80 11.14 66.78 0.74 -6.05 16 6 S 0.15 3.37 23.22 -56.49 -1.31 2.06 16 7 C 0.00 0.10 12.23 130.65 1.60 1.69 16 8 N -0.48 -18.39 9.09 -191.54 -1.74 -20.13 16 9 N -0.53 -23.45 4.38 -906.02 -3.97 -27.42 16 10 C 0.04 1.43 8.85 127.69 1.13 2.56 16 11 C 0.18 9.48 3.50 85.55 0.30 9.78 16 12 C -0.50 -30.81 8.97 25.60 0.23 -30.58 16 13 H 0.04 2.51 7.39 -2.91 -0.02 2.49 16 14 C 0.01 0.52 5.47 84.66 0.46 0.98 16 15 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 16 Si 0.94 46.56 27.47 68.60 1.88 48.44 16 17 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 19 H -0.26 -12.50 6.54 99.48 0.65 -11.85 16 20 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 21 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.07 1.79 6.41 -2.39 -0.02 1.77 16 23 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 24 H 0.21 5.05 8.06 -2.91 -0.02 5.03 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 2.71 6.42 -2.39 -0.02 2.70 16 27 H 0.05 2.16 6.69 -2.39 -0.02 2.15 16 28 H 0.03 1.36 5.18 -2.39 -0.01 1.34 16 29 H -0.03 -1.37 7.55 -2.39 -0.02 -1.39 16 30 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 Total: -1.00 -74.26 261.49 1.63 -72.63 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.07 Total: 2.69 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 5.39 Total: -17.24 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -5.41 Total: -108.59 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.31 Total: 2.06 kcal Total: -74.26 1.63 -72.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308257018.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.190 kcal (2) G-P(sol) polarization free energy of solvation -74.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds