Wall clock time and date at job start Mon Mar 30 2020 03:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81401 * 103.00093 * 2 1 4 4 C 1.52998 * 115.54977 * 294.01473 * 3 2 1 5 5 N 1.46498 * 109.46912 * 279.26148 * 4 3 2 6 6 C 1.36937 * 120.00278 * 265.19504 * 5 4 3 7 7 H 1.07998 * 119.99699 * 24.50652 * 6 5 4 8 8 C 1.38816 * 120.00172 * 204.50438 * 6 5 4 9 9 N 1.31618 * 120.00047 * 355.50401 * 8 6 5 10 10 Si 1.86798 * 119.99919 * 175.50455 * 8 6 5 11 11 H 1.48493 * 109.47250 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47075 * 120.00349 * 10 8 6 13 13 H 1.48503 * 109.46927 * 239.99885 * 10 8 6 14 14 C 1.46503 * 119.99876 * 85.20150 * 5 4 3 15 15 C 1.47193 * 109.47401 * 86.96148 * 14 5 4 16 16 N 5.50572 * 83.58484 * 287.78938 * 2 1 3 17 17 C 1.53003 * 117.51749 * 79.71228 * 3 2 1 18 18 C 1.52999 * 60.00108 * 107.48488 * 17 3 2 19 19 H 1.08999 * 109.46651 * 185.42372 * 1 2 3 20 20 H 1.08994 * 109.46985 * 305.42215 * 1 2 3 21 21 H 1.08994 * 109.46858 * 65.42307 * 1 2 3 22 22 H 1.09002 * 109.47199 * 159.26498 * 4 3 2 23 23 H 1.08999 * 109.47233 * 39.26444 * 4 3 2 24 24 H 0.96999 * 120.00325 * 180.02562 * 9 8 6 25 25 H 1.09010 * 109.47060 * 326.96142 * 14 5 4 26 26 H 1.09002 * 109.46994 * 206.96425 * 14 5 4 27 27 H 1.09004 * 117.50035 * 214.97960 * 17 3 2 28 28 H 1.08998 * 117.49679 * 359.97438 * 17 3 2 29 29 H 1.08996 * 117.49731 * 252.51079 * 18 17 3 30 30 H 1.09000 * 117.51885 * 107.48074 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.8232 2.5368 -1.2609 5 7 2.8260 2.3156 -2.3056 6 6 3.8487 3.2106 -2.4737 7 1 4.1634 3.8321 -1.6484 8 6 4.4810 3.3190 -3.7047 9 7 4.1585 2.5014 -4.6844 10 14 5.7896 4.6252 -3.9707 11 1 5.9659 5.4107 -2.7229 12 1 7.0741 3.9728 -4.3312 13 1 5.3688 5.5308 -5.0699 14 6 2.7347 1.1368 -3.1708 15 6 1.8679 1.4387 -4.3215 16 7 1.1989 1.6716 -5.2096 17 6 2.1450 2.5108 1.3351 18 6 3.5066 2.1961 0.7123 19 1 -0.3632 -1.0231 0.0971 20 1 -0.3633 0.5956 0.8374 21 1 -0.3633 0.4274 -0.9345 22 1 1.7641 3.6013 -1.0336 23 1 0.8520 2.1852 -1.6091 24 1 4.6006 2.5769 -5.5445 25 1 2.3136 0.3042 -2.6072 26 1 3.7298 0.8688 -3.5259 27 1 1.8100 3.5479 1.3152 28 1 1.8486 1.9378 2.2137 29 1 4.1063 1.4160 1.1813 30 1 4.0677 3.0258 0.2824 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379363019.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:10 Heat of formation + Delta-G solvation = 64.749638 kcal Electronic energy + Delta-G solvation = -13787.218699 eV Core-core repulsion = 11517.262592 eV Total energy + Delta-G solvation = -2269.956108 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.04459 -37.27034 -35.83405 -33.10971 -29.73300 -29.11125 -28.00215 -24.06381 -23.13094 -21.49835 -19.32497 -17.83333 -17.21110 -16.87112 -15.87395 -15.50778 -15.49058 -15.07468 -14.28406 -14.13447 -13.86284 -13.51032 -13.18344 -13.16052 -12.88750 -12.83443 -12.56043 -12.22620 -12.05581 -11.89804 -11.82013 -11.60676 -10.93212 -10.62851 -10.44956 -9.02517 -8.35228 -7.85287 -5.35944 0.97927 1.48597 1.52332 1.59789 1.80929 2.28460 2.51492 2.61767 2.96668 3.33889 3.83660 3.90650 4.00105 4.17925 4.26684 4.44506 4.47993 4.76992 4.84882 4.93251 4.97325 5.05900 5.12412 5.17452 5.37879 5.49064 5.70050 6.31736 7.10268 7.35441 7.78173 8.22225 9.15342 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.010649 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.967346 B = 2628.667744 C = 3351.754924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.241 6.241 3 C -0.130 4.130 4 C 0.186 3.814 5 N -0.586 5.586 6 C -0.243 4.243 7 H 0.088 0.912 8 C -0.047 4.047 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.294 1.294 13 H -0.308 1.308 14 C 0.260 3.740 15 C 0.269 3.731 16 N -0.561 5.561 17 C -0.139 4.139 18 C -0.126 4.126 19 H 0.112 0.888 20 H 0.088 0.912 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.041 0.959 24 H 0.247 0.753 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 -2.863 14.047 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.012 6.012 3 C -0.243 4.243 4 C 0.058 3.942 5 N -0.305 5.305 6 C -0.373 4.373 7 H 0.105 0.895 8 C -0.241 4.241 9 N -0.583 5.583 10 Si 0.795 3.205 11 H -0.185 1.185 12 H -0.221 1.221 13 H -0.236 1.236 14 C 0.130 3.870 15 C -0.048 4.048 16 N -0.244 5.244 17 C -0.179 4.179 18 C -0.165 4.165 19 H 0.130 0.870 20 H 0.107 0.893 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.917 -3.421 12.612 13.642 hybrid contribution 0.299 1.665 -0.660 1.816 sum -3.618 -1.755 11.952 12.610 Atomic orbital electron populations 1.23398 0.93054 1.06978 1.05109 1.86420 1.08815 1.08688 1.97261 1.24356 1.08672 0.93719 0.97539 1.20554 0.90364 0.97211 0.86069 1.43953 1.27689 1.24182 1.34710 1.19607 1.08931 1.14029 0.94691 0.89465 1.25701 1.02517 1.00263 0.95660 1.69925 1.45539 1.39330 1.03547 0.85214 0.78533 0.79227 0.77532 1.18476 1.22076 1.23606 1.18577 0.96240 0.89094 0.83076 1.31250 0.89463 0.89848 0.94245 1.80779 1.17497 1.12268 1.13893 1.23346 0.99678 1.01154 0.93736 1.22740 0.90194 1.02621 1.00903 0.86950 0.89288 0.91430 0.91937 0.94064 0.94341 0.89136 0.87948 0.87539 0.86923 0.88528 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 10.59 113.37 1.20 -1.29 16 2 S -0.24 -6.77 20.85 -56.49 -1.18 -7.95 16 3 C -0.13 -3.81 2.18 -10.79 -0.02 -3.84 16 4 C 0.19 6.60 5.62 86.38 0.49 7.09 16 5 N -0.59 -25.54 2.45 -712.55 -1.74 -27.28 16 6 C -0.24 -11.63 9.28 84.03 0.78 -10.86 16 7 H 0.09 3.96 6.77 -2.91 -0.02 3.94 16 8 C -0.05 -2.43 5.37 84.86 0.46 -1.97 16 9 N -0.94 -51.68 8.55 21.65 0.19 -51.49 16 10 Si 0.96 42.98 29.56 68.60 2.03 45.01 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 14 C 0.26 11.57 5.45 84.57 0.46 12.03 16 15 C 0.27 13.39 13.54 89.44 1.21 14.60 16 16 N -0.56 -29.92 18.54 20.00 0.37 -29.55 16 17 C -0.14 -3.16 9.94 30.59 0.30 -2.85 16 18 C -0.13 -3.53 9.82 30.59 0.30 -3.22 16 19 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 20 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.07 1.57 7.57 -2.39 -0.02 1.55 16 22 H 0.06 2.19 7.80 -2.39 -0.02 2.18 16 23 H 0.04 1.46 7.37 -2.39 -0.02 1.44 16 24 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 25 H 0.09 3.53 6.58 -2.38 -0.02 3.51 16 26 H 0.10 5.07 6.32 -2.39 -0.02 5.05 16 27 H 0.11 2.21 8.08 -2.38 -0.02 2.19 16 28 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.09 2.95 6.84 -2.39 -0.02 2.93 16 Total: -1.00 -59.74 271.24 5.97 -53.78 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.13 Total: 7.80 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 5.17 Total: 9.69 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -1.19 Total: -108.33 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.18 Total: -7.95 kcal Total: -59.74 5.97 -53.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379363019.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.525 kcal (2) G-P(sol) polarization free energy of solvation -59.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds