Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 119.99711 * 2 1 4 4 C 1.53006 * 109.47085 * 125.00088 * 3 2 1 5 5 H 1.09004 * 109.47198 * 54.99574 * 4 3 2 6 6 C 1.50700 * 109.46814 * 294.99502 * 4 3 2 7 7 H 1.08005 * 119.99691 * 121.87625 * 6 4 3 8 8 C 1.37871 * 120.00473 * 301.60189 * 6 4 3 9 9 N 1.31517 * 119.99894 * 353.94891 * 8 6 4 10 10 Si 1.86801 * 120.00496 * 173.94788 * 8 6 4 11 11 H 1.48502 * 109.46944 * 94.98573 * 10 8 6 12 12 H 1.48494 * 109.47331 * 214.98580 * 10 8 6 13 13 H 1.48498 * 109.46858 * 334.98896 * 10 8 6 14 14 C 1.52997 * 109.46955 * 174.99911 * 4 3 2 15 15 H 1.08998 * 110.32980 * 56.49984 * 14 4 3 16 16 C 1.54496 * 110.36433 * 178.73977 * 14 4 3 17 17 C 1.54781 * 102.04815 * 134.12853 * 16 14 4 18 18 H 1.09000 * 110.36708 * 91.98913 * 17 16 14 19 19 O 1.42900 * 110.57376 * 214.42341 * 17 16 14 20 20 O 1.45840 * 104.49329 * 333.25814 * 17 16 14 21 21 C 1.34061 * 109.90247 * 30.54699 * 20 17 16 22 22 O 1.20830 * 125.09389 * 159.13807 * 21 20 17 23 23 H 1.08004 * 119.99881 * 180.02562 * 1 2 3 24 24 H 1.07998 * 120.00254 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00254 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.47707 * 4.99836 * 3 2 1 27 27 H 1.09002 * 109.46834 * 244.99598 * 3 2 1 28 28 H 0.97000 * 120.00317 * 179.97438 * 9 8 6 29 29 H 1.09000 * 110.86591 * 252.33798 * 16 14 4 30 30 H 1.08998 * 110.86899 * 16.01917 * 16 14 4 31 31 H 0.96705 * 113.99997 * 176.60857 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 3.6826 0.4573 1.1404 6 6 2.2568 1.3221 2.4721 7 1 2.4187 0.5349 3.1937 8 6 1.3422 2.3199 2.7342 9 7 1.2336 3.3439 1.9161 10 14 0.2571 2.2176 4.2513 11 1 0.8807 2.9859 5.3586 12 1 -1.0789 2.7883 3.9439 13 1 0.1071 0.7972 4.6576 14 6 3.8874 2.6017 1.1110 15 1 3.2499 3.4855 1.0889 16 6 4.8553 2.6666 2.3134 17 6 6.1891 3.0598 1.6336 18 1 6.3065 4.1435 1.6269 19 8 7.2930 2.4436 2.2997 20 8 6.0682 2.5522 0.2717 21 6 4.7827 2.5674 -0.1085 22 8 4.3968 2.5560 -1.2535 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6212 1.4026 -0.9314 28 1 0.5899 4.0458 2.1002 29 1 4.5403 3.4303 3.0246 30 1 4.9385 1.6938 2.7979 31 1 8.1489 2.6146 1.8833 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379512329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = -139.456328 kcal Electronic energy + Delta-G solvation = -16301.623552 eV Core-core repulsion = 13547.766787 eV Total energy + Delta-G solvation = -2753.856765 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.00795 -38.81923 -37.62794 -36.72374 -34.37716 -33.43983 -30.46382 -27.43135 -26.88693 -23.42512 -22.93762 -21.37955 -20.42398 -19.04457 -18.24707 -17.91827 -17.73510 -16.63030 -16.27045 -15.80014 -15.09657 -14.95658 -14.36787 -14.36286 -13.92622 -13.31051 -13.20273 -12.99668 -12.67604 -12.51853 -12.36845 -12.26622 -11.93509 -11.61219 -11.55778 -11.17159 -11.04805 -10.74141 -10.32685 -9.77580 -8.01851 -6.15515 1.14115 1.44100 1.50325 1.57058 1.72166 2.09988 2.48338 3.08096 3.20585 3.42070 3.68671 3.93412 4.24346 4.40934 4.53187 4.67383 4.83807 5.06837 5.17816 5.18817 5.22699 5.44810 5.55360 5.70682 5.81003 5.97167 6.12242 6.23299 6.41281 6.55103 6.64156 6.85711 7.53457 8.98166 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.011414 C = 0.008803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.807314 B = 2452.593746 C = 3179.963520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.123 4.123 3 C -0.099 4.099 4 C 0.071 3.929 5 H 0.013 0.987 6 C -0.510 4.510 7 H 0.049 0.951 8 C 0.044 3.956 9 N -0.899 5.899 10 Si 0.935 3.065 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.277 1.277 14 C -0.134 4.134 15 H 0.127 0.873 16 C -0.112 4.112 17 C 0.260 3.740 18 H 0.127 0.873 19 O -0.544 6.544 20 O -0.394 6.394 21 C 0.488 3.512 22 O -0.497 6.497 23 H 0.107 0.893 24 H 0.077 0.923 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.263 0.737 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 0.831 1.583 6.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.141 4.141 3 C -0.136 4.136 4 C 0.053 3.947 5 H 0.032 0.968 6 C -0.548 4.548 7 H 0.068 0.932 8 C -0.157 4.157 9 N -0.538 5.538 10 Si 0.762 3.238 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.154 4.154 15 H 0.145 0.855 16 C -0.150 4.150 17 C 0.165 3.835 18 H 0.144 0.856 19 O -0.353 6.353 20 O -0.314 6.314 21 C 0.332 3.668 22 O -0.384 6.384 23 H 0.125 0.875 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.129 0.727 1.329 6.314 hybrid contribution -0.360 0.175 0.384 0.555 sum 5.769 0.902 1.713 6.085 Atomic orbital electron populations 1.23622 0.95824 1.00887 1.04578 1.22908 0.96314 0.98149 0.96767 1.20900 0.99736 0.95983 0.96995 1.18487 0.91932 0.89774 0.94555 0.96837 1.21041 1.21592 1.09437 1.02699 0.93244 1.25296 0.97398 0.94777 0.98194 1.69811 1.36063 1.10065 1.37851 0.85902 0.78875 0.77988 0.81049 1.20087 1.21511 1.20210 1.22733 0.96694 1.06533 0.89426 0.85529 1.22703 0.90092 1.04585 0.97607 1.24834 0.88810 0.95223 0.74587 0.85563 1.86643 1.18659 1.78141 1.51876 1.86833 1.30430 1.77815 1.36362 1.23795 0.82165 0.69900 0.90935 1.90573 1.77036 1.46885 1.23886 0.87459 0.90483 0.88144 0.90755 0.94142 0.92756 0.88024 0.89962 0.74085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.46 14.32 67.78 0.97 -7.49 16 2 C -0.12 -5.30 8.95 25.65 0.23 -5.07 16 3 C -0.10 -4.71 4.84 29.85 0.14 -4.57 16 4 C 0.07 3.37 1.51 -11.54 -0.02 3.35 16 5 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 6 C -0.51 -25.17 7.28 25.60 0.19 -24.99 16 7 H 0.05 2.48 7.82 -2.91 -0.02 2.46 16 8 C 0.04 2.15 5.10 84.65 0.43 2.58 16 9 N -0.90 -45.33 9.44 21.45 0.20 -45.13 16 10 Si 0.93 40.29 29.54 68.60 2.03 42.32 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 14 C -0.13 -5.74 2.27 -10.83 -0.02 -5.76 16 15 H 0.13 6.00 6.15 -2.39 -0.01 5.98 16 16 C -0.11 -4.01 5.89 31.71 0.19 -3.83 16 17 C 0.26 7.53 5.05 72.59 0.37 7.90 16 18 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 19 O -0.54 -13.64 13.64 -126.54 -1.73 -15.36 16 20 O -0.39 -14.39 10.99 -42.49 -0.47 -14.86 16 21 C 0.49 20.87 7.74 71.44 0.55 21.42 16 22 O -0.50 -23.94 15.90 21.63 0.34 -23.60 16 23 H 0.11 3.58 8.06 -2.91 -0.02 3.56 16 24 H 0.08 3.25 7.84 -2.91 -0.02 3.23 16 25 H 0.10 3.97 8.06 -2.91 -0.02 3.95 16 26 H 0.07 3.89 5.71 -2.39 -0.01 3.88 16 27 H 0.04 1.99 5.86 -2.39 -0.01 1.97 16 28 H 0.26 12.85 8.31 -92.71 -0.77 12.08 16 29 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.08 3.15 7.61 -2.39 -0.02 3.13 16 31 H 0.41 5.96 9.12 -74.05 -0.68 5.29 16 Total: -1.00 -58.65 262.76 3.87 -54.78 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.46 Total: 18.31 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.03 Total: -16.46 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.20 Total: -45.13 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -1.85 Total: -53.81 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -58.65 3.87 -54.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379512329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.679 kcal (2) G-P(sol) polarization free energy of solvation -58.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds