Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99888 * 2 1 4 4 C 1.52995 * 109.47276 * 125.53540 * 3 2 1 5 5 H 1.08999 * 109.47169 * 175.28905 * 4 3 2 6 6 C 1.50704 * 109.46893 * 55.29202 * 4 3 2 7 7 H 1.08004 * 119.99769 * 245.36985 * 6 4 3 8 8 C 1.37872 * 119.99911 * 65.36727 * 6 4 3 9 9 N 1.31508 * 120.00320 * 6.14034 * 8 6 4 10 10 Si 1.86808 * 119.99763 * 186.13219 * 8 6 4 11 11 H 1.48499 * 109.47051 * 180.02562 * 10 8 6 12 12 H 1.48494 * 109.47247 * 300.00360 * 10 8 6 13 13 H 1.48497 * 109.46765 * 60.00235 * 10 8 6 14 14 C 1.53002 * 109.47402 * 295.28959 * 4 3 2 15 15 H 1.09003 * 110.32301 * 66.88884 * 14 4 3 16 16 C 1.54483 * 110.36755 * 304.64804 * 14 4 3 17 17 C 1.54570 * 102.14795 * 225.81639 * 16 14 4 18 18 H 1.08992 * 110.44266 * 267.98885 * 17 16 14 19 19 O 1.42901 * 110.44247 * 145.58655 * 17 16 14 20 20 O 1.45836 * 104.44165 * 26.84941 * 17 16 14 21 21 C 1.34066 * 109.90680 * 329.39701 * 20 17 16 22 22 O 1.20822 * 125.09529 * 200.84885 * 21 20 17 23 23 H 1.08000 * 119.99571 * 180.02562 * 1 2 3 24 24 H 1.07992 * 120.00249 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00436 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46886 * 5.53722 * 3 2 1 27 27 H 1.09000 * 109.47119 * 245.53991 * 3 2 1 28 28 H 0.97002 * 119.99926 * 355.32166 * 9 8 6 29 29 H 1.09008 * 110.87245 * 343.98012 * 16 14 4 30 30 H 1.09006 * 110.87104 * 107.44470 * 16 14 4 31 31 H 0.96700 * 113.99885 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0445 1.3277 1.1738 5 1 3.6479 2.2341 1.1257 6 6 3.9442 0.1209 1.0997 7 1 3.8960 -0.6365 1.8682 8 6 4.8286 -0.0163 0.0510 9 7 4.9744 0.9597 -0.8183 10 14 5.8203 -1.5885 -0.1349 11 1 6.6915 -1.4854 -1.3330 12 1 6.6613 -1.7890 1.0724 13 1 4.8966 -2.7406 -0.2916 14 6 2.2654 1.3030 2.4903 15 1 1.7524 0.3485 2.6088 16 6 1.2516 2.4677 2.5371 17 6 1.4731 3.0349 3.9578 18 1 0.7906 2.5652 4.6659 19 8 1.2970 4.4530 3.9621 20 8 2.8548 2.6925 4.2748 21 6 3.1956 1.5522 3.6576 22 8 4.1084 0.8313 3.9846 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5400 0.9352 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3593 2.1312 0.0992 27 1 2.6137 1.4070 -0.9354 28 1 4.4116 1.7477 -0.7616 29 1 1.4848 3.2161 1.7795 30 1 0.2324 2.1005 2.4167 31 1 1.4238 4.8625 4.8289 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379512331.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -124.071244 kcal Electronic energy + Delta-G solvation = -16264.817371 eV Core-core repulsion = 13511.627754 eV Total energy + Delta-G solvation = -2753.189618 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.67302 -37.36079 -36.42110 -35.57836 -32.49572 -32.26888 -28.72048 -26.18177 -24.75335 -22.23257 -21.45722 -20.21414 -18.76002 -17.91747 -17.06496 -16.70203 -16.19264 -14.99289 -14.32188 -14.01409 -13.83736 -13.70456 -13.18442 -12.92587 -12.41177 -12.01641 -11.87278 -11.33514 -11.12632 -11.04002 -10.82203 -10.52013 -10.46721 -10.20584 -10.05315 -9.67958 -9.42047 -8.57292 -8.47762 -8.26862 -6.32674 -4.04950 2.71313 3.07202 3.34474 3.45913 3.50063 3.67189 4.03818 4.54596 4.65757 4.68404 4.78753 5.37644 5.39930 5.53661 5.72272 5.95950 5.99524 6.15977 6.18945 6.45572 6.71422 6.72462 6.98909 7.16734 7.25341 7.31169 7.49037 7.62328 8.10637 8.16407 8.48309 8.86353 9.63156 11.03651 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.010475 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.789636 B = 2672.363839 C = 3251.570057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.085 4.085 3 C -0.097 4.097 4 C 0.057 3.943 5 H 0.027 0.973 6 C -0.585 4.585 7 H 0.057 0.943 8 C 0.023 3.977 9 N -0.912 5.912 10 Si 1.063 2.937 11 H -0.284 1.284 12 H -0.287 1.287 13 H -0.288 1.288 14 C -0.128 4.128 15 H 0.108 0.892 16 C -0.143 4.143 17 C 0.259 3.741 18 H 0.091 0.909 19 O -0.539 6.539 20 O -0.388 6.388 21 C 0.495 3.505 22 O -0.434 6.434 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.269 0.731 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 2.825 6.330 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.103 4.103 3 C -0.135 4.135 4 C 0.038 3.962 5 H 0.045 0.955 6 C -0.623 4.623 7 H 0.076 0.924 8 C -0.181 4.181 9 N -0.549 5.549 10 Si 0.891 3.109 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.214 1.214 14 C -0.148 4.148 15 H 0.126 0.874 16 C -0.180 4.180 17 C 0.163 3.837 18 H 0.108 0.892 19 O -0.345 6.345 20 O -0.309 6.309 21 C 0.335 3.665 22 O -0.315 6.315 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.131 0.869 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.443 1.777 5.084 10.015 hybrid contribution -1.205 0.839 1.483 2.087 sum -9.648 2.616 6.568 11.961 Atomic orbital electron populations 1.23555 0.96062 1.00206 1.09466 1.23142 0.94688 1.00129 0.92304 1.21031 0.97418 0.93197 1.01840 1.18686 0.92288 0.99027 0.86178 0.95522 1.21842 1.22752 1.06591 1.11078 0.92429 1.25683 0.96715 1.02563 0.93097 1.70831 1.38531 1.07275 1.38274 0.83616 0.76304 0.74685 0.76248 1.20927 1.21359 1.21440 1.22621 0.95304 0.99010 0.97894 0.87444 1.23085 1.01192 0.98656 0.95091 1.24354 0.79515 0.81979 0.97802 0.89166 1.86663 1.90813 1.19588 1.37475 1.86924 1.32697 1.42280 1.68986 1.22930 0.84176 0.77421 0.82013 1.90681 1.29243 1.44624 1.66918 0.89813 0.89870 0.86927 0.94307 0.90193 0.91907 0.88368 0.88651 0.76441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.18 14.32 29.01 0.42 -3.77 16 2 C -0.08 -1.65 8.06 -36.03 -0.29 -1.94 16 3 C -0.10 -2.03 4.89 -27.89 -0.14 -2.17 16 4 C 0.06 1.32 1.17 -91.77 -0.11 1.21 16 5 H 0.03 0.70 7.63 -51.93 -0.40 0.30 16 6 C -0.58 -15.60 6.39 -34.44 -0.22 -15.82 16 7 H 0.06 1.60 7.40 -52.48 -0.39 1.21 16 8 C 0.02 0.65 5.28 -17.82 -0.09 0.56 16 9 N -0.91 -26.58 13.19 55.43 0.73 -25.85 16 10 Si 1.06 25.32 29.91 -169.99 -5.08 20.23 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 C -0.13 -2.49 2.19 -90.68 -0.20 -2.69 16 15 H 0.11 2.03 7.65 -51.93 -0.40 1.63 16 16 C -0.14 -2.17 5.49 -25.13 -0.14 -2.31 16 17 C 0.26 3.59 5.05 37.98 0.19 3.78 16 18 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 19 O -0.54 -6.77 13.63 -58.70 -0.80 -7.57 16 20 O -0.39 -7.17 10.99 -46.47 -0.51 -7.68 16 21 C 0.50 10.59 7.77 36.31 0.28 10.87 16 22 O -0.43 -10.90 16.96 -18.41 -0.31 -11.21 16 23 H 0.08 1.24 8.06 -52.49 -0.42 0.82 16 24 H 0.08 1.25 7.84 -52.49 -0.41 0.84 16 25 H 0.11 2.40 7.46 -52.49 -0.39 2.01 16 26 H 0.04 0.71 6.11 -51.93 -0.32 0.39 16 27 H 0.08 1.88 6.19 -51.93 -0.32 1.56 16 28 H 0.27 7.70 5.65 -40.82 -0.23 7.46 16 29 H 0.10 1.60 6.94 -51.92 -0.36 1.24 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.39 3.01 9.12 45.56 0.42 3.43 16 LS Contribution 262.93 15.07 3.96 3.96 Total: -1.00 -31.90 262.93 -5.17 -37.07 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -2.86 Total: 3.32 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.29 Total: -12.28 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.73 Total: -25.85 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -1.62 Total: -26.46 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.90 -5.17 -37.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379512331.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.002 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds