Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99888 * 2 1 4 4 C 1.52995 * 109.47276 * 125.53540 * 3 2 1 5 5 H 1.08999 * 109.47169 * 175.28905 * 4 3 2 6 6 C 1.50704 * 109.46893 * 55.29202 * 4 3 2 7 7 H 1.08004 * 119.99769 * 245.36985 * 6 4 3 8 8 C 1.37872 * 119.99911 * 65.36727 * 6 4 3 9 9 N 1.31508 * 120.00320 * 6.14034 * 8 6 4 10 10 Si 1.86808 * 119.99763 * 186.13219 * 8 6 4 11 11 H 1.48499 * 109.47051 * 180.02562 * 10 8 6 12 12 H 1.48494 * 109.47247 * 300.00360 * 10 8 6 13 13 H 1.48497 * 109.46765 * 60.00235 * 10 8 6 14 14 C 1.53002 * 109.47402 * 295.28959 * 4 3 2 15 15 H 1.09003 * 110.32301 * 66.88884 * 14 4 3 16 16 C 1.54483 * 110.36755 * 304.64804 * 14 4 3 17 17 C 1.54570 * 102.14795 * 225.81639 * 16 14 4 18 18 H 1.08992 * 110.44266 * 267.98885 * 17 16 14 19 19 O 1.42901 * 110.44247 * 145.58655 * 17 16 14 20 20 O 1.45836 * 104.44165 * 26.84941 * 17 16 14 21 21 C 1.34066 * 109.90680 * 329.39701 * 20 17 16 22 22 O 1.20822 * 125.09529 * 200.84885 * 21 20 17 23 23 H 1.08000 * 119.99571 * 180.02562 * 1 2 3 24 24 H 1.07992 * 120.00249 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00436 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46886 * 5.53722 * 3 2 1 27 27 H 1.09000 * 109.47119 * 245.53991 * 3 2 1 28 28 H 0.97002 * 119.99926 * 355.32166 * 9 8 6 29 29 H 1.09008 * 110.87245 * 343.98012 * 16 14 4 30 30 H 1.09006 * 110.87104 * 107.44470 * 16 14 4 31 31 H 0.96700 * 113.99885 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0445 1.3277 1.1738 5 1 3.6479 2.2341 1.1257 6 6 3.9442 0.1209 1.0997 7 1 3.8960 -0.6365 1.8682 8 6 4.8286 -0.0163 0.0510 9 7 4.9744 0.9597 -0.8183 10 14 5.8203 -1.5885 -0.1349 11 1 6.6915 -1.4854 -1.3330 12 1 6.6613 -1.7890 1.0724 13 1 4.8966 -2.7406 -0.2916 14 6 2.2654 1.3030 2.4903 15 1 1.7524 0.3485 2.6088 16 6 1.2516 2.4677 2.5371 17 6 1.4731 3.0349 3.9578 18 1 0.7906 2.5652 4.6659 19 8 1.2970 4.4530 3.9621 20 8 2.8548 2.6925 4.2748 21 6 3.1956 1.5522 3.6576 22 8 4.1084 0.8313 3.9846 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5400 0.9352 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3593 2.1312 0.0992 27 1 2.6137 1.4070 -0.9354 28 1 4.4116 1.7477 -0.7616 29 1 1.4848 3.2161 1.7795 30 1 0.2324 2.1005 2.4167 31 1 1.4238 4.8625 4.8289 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379512331.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -146.482731 kcal Electronic energy + Delta-G solvation = -16265.789206 eV Core-core repulsion = 13511.627754 eV Total energy + Delta-G solvation = -2754.161453 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.15159 -38.85477 -38.12570 -36.79968 -34.34905 -33.76937 -30.29098 -27.66427 -26.65976 -23.76111 -22.94300 -21.75540 -20.31458 -19.19857 -18.58718 -18.37102 -17.78918 -16.48606 -15.84321 -15.67051 -15.46815 -15.38325 -14.72444 -14.43891 -13.83409 -13.62292 -13.33847 -12.95720 -12.70842 -12.62173 -12.40411 -12.20245 -12.04236 -11.94322 -11.54332 -11.24209 -11.11006 -10.49754 -10.35818 -9.98063 -8.51008 -6.21911 1.08371 1.50819 1.57746 1.65046 1.76604 2.02043 2.57522 2.93232 3.19091 3.28375 3.41581 3.77814 4.11656 4.18428 4.28251 4.48763 4.59252 4.76539 4.85989 4.92924 5.02697 5.20980 5.32853 5.45868 5.74569 5.99260 6.05008 6.20082 6.32418 6.50357 6.56884 6.71799 7.51340 8.86275 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.010475 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.789636 B = 2672.363839 C = 3251.570057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.082 4.082 4 C 0.054 3.946 5 H -0.013 1.013 6 C -0.581 4.581 7 H 0.041 0.959 8 C -0.026 4.026 9 N -0.940 5.940 10 Si 1.098 2.902 11 H -0.285 1.285 12 H -0.287 1.287 13 H -0.265 1.265 14 C -0.123 4.123 15 H 0.116 0.884 16 C -0.135 4.135 17 C 0.258 3.742 18 H 0.140 0.860 19 O -0.546 6.546 20 O -0.399 6.399 21 C 0.493 3.507 22 O -0.488 6.488 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.261 0.739 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.105 2.918 7.057 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.143 4.143 3 C -0.120 4.120 4 C 0.036 3.964 5 H 0.005 0.995 6 C -0.619 4.619 7 H 0.060 0.940 8 C -0.224 4.224 9 N -0.579 5.579 10 Si 0.922 3.078 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.190 1.190 14 C -0.142 4.142 15 H 0.134 0.866 16 C -0.172 4.172 17 C 0.164 3.836 18 H 0.157 0.843 19 O -0.355 6.355 20 O -0.319 6.319 21 C 0.335 3.665 22 O -0.372 6.372 23 H 0.124 0.876 24 H 0.126 0.874 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.154 0.846 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -11.510 1.908 5.834 13.044 hybrid contribution -0.385 0.914 1.317 1.649 sum -11.895 2.823 7.151 14.164 Atomic orbital electron populations 1.23832 0.94535 1.02386 1.03589 1.22792 0.95853 0.98051 0.97629 1.20777 0.97061 0.95439 0.98677 1.18592 0.92667 0.95470 0.89692 0.99541 1.22079 1.22869 1.07213 1.09768 0.94017 1.26793 0.98064 1.04330 0.93249 1.70912 1.39605 1.07856 1.39551 0.83160 0.75721 0.72932 0.75950 1.21092 1.21301 1.19027 1.22482 0.95537 1.01537 0.94676 0.86569 1.23096 1.01698 0.96541 0.95894 1.24827 0.77720 0.83021 0.98012 0.84323 1.86618 1.90287 1.18949 1.39691 1.86896 1.35690 1.40760 1.68599 1.23286 0.83514 0.77500 0.82205 1.90638 1.31422 1.46809 1.68364 0.87648 0.87352 0.89699 0.91346 0.93825 0.92798 0.89594 0.84636 0.73867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.84 14.32 67.78 0.97 -4.87 16 2 C -0.13 -4.68 8.06 25.64 0.21 -4.47 16 3 C -0.08 -3.40 4.89 29.85 0.15 -3.26 16 4 C 0.05 2.58 1.17 -11.54 -0.01 2.56 16 5 H -0.01 -0.74 7.63 -2.39 -0.02 -0.75 16 6 C -0.58 -32.07 6.39 25.60 0.16 -31.91 16 7 H 0.04 2.39 7.40 -2.91 -0.02 2.37 16 8 C -0.03 -1.50 5.28 84.65 0.45 -1.05 16 9 N -0.94 -57.04 13.19 21.44 0.28 -56.76 16 10 Si 1.10 52.28 29.91 68.60 2.05 54.33 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 C -0.12 -4.62 2.19 -10.84 -0.02 -4.65 16 15 H 0.12 4.18 7.65 -2.39 -0.02 4.16 16 16 C -0.14 -3.64 5.49 31.63 0.17 -3.47 16 17 C 0.26 6.19 5.05 72.52 0.37 6.56 16 18 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 19 O -0.55 -11.68 13.63 -126.54 -1.73 -13.41 16 20 O -0.40 -14.20 10.99 -42.54 -0.47 -14.66 16 21 C 0.49 21.13 7.77 71.44 0.56 21.69 16 22 O -0.49 -25.26 16.96 21.65 0.37 -24.90 16 23 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 24 H 0.11 2.58 7.84 -2.91 -0.02 2.55 16 25 H 0.08 3.63 7.46 -2.91 -0.02 3.61 16 26 H 0.07 2.37 6.11 -2.39 -0.01 2.36 16 27 H 0.04 2.11 6.19 -2.39 -0.01 2.10 16 28 H 0.26 15.73 5.65 -92.71 -0.52 15.20 16 29 H 0.09 2.57 6.94 -2.38 -0.02 2.56 16 30 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.41 4.82 9.12 -74.06 -0.68 4.14 16 Total: -1.00 -73.40 262.93 4.21 -69.19 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.71 Total: 9.07 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 2.99 Total: -22.87 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.76 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -1.83 Total: -52.97 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 2.05 Total: 54.33 kcal Total: -73.40 4.21 -69.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379512331.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.296 kcal (2) G-P(sol) polarization free energy of solvation -73.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds