Wall clock time and date at job start Mon Mar 30 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00130 * 2 1 4 4 C 1.53003 * 109.47294 * 122.99848 * 3 2 1 5 5 H 1.08996 * 109.46779 * 305.50923 * 4 3 2 6 6 C 1.50692 * 109.47170 * 65.50871 * 4 3 2 7 7 H 1.08008 * 119.99757 * 65.12191 * 6 4 3 8 8 C 1.37871 * 120.00238 * 245.12044 * 6 4 3 9 9 N 1.31514 * 120.00055 * 354.67439 * 8 6 4 10 10 Si 1.86807 * 120.00148 * 174.67955 * 8 6 4 11 11 H 1.48494 * 109.46848 * 269.99827 * 10 8 6 12 12 H 1.48499 * 109.47166 * 29.99720 * 10 8 6 13 13 H 1.48499 * 109.46845 * 149.99744 * 10 8 6 14 14 C 1.53002 * 109.46817 * 185.51051 * 4 3 2 15 15 H 1.08996 * 110.33070 * 297.75968 * 14 4 3 16 16 C 1.54499 * 110.36902 * 59.99826 * 14 4 3 17 17 C 1.54573 * 102.14623 * 134.17568 * 16 14 4 18 18 H 1.08999 * 110.44172 * 214.28458 * 17 16 14 19 19 O 1.42900 * 110.43336 * 91.89039 * 17 16 14 20 20 O 1.45839 * 104.44484 * 333.15607 * 17 16 14 21 21 C 1.34061 * 109.90614 * 30.59925 * 20 17 16 22 22 O 1.20826 * 125.09225 * 159.19531 * 21 20 17 23 23 H 1.07993 * 120.00151 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.99932 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.99932 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47249 * 2.99115 * 3 2 1 27 27 H 1.09006 * 109.46774 * 242.99790 * 3 2 1 28 28 H 0.96996 * 120.00532 * 180.02562 * 9 8 6 29 29 H 1.08994 * 110.86908 * 252.34520 * 16 14 4 30 30 H 1.09006 * 110.86444 * 16.01523 * 16 14 4 31 31 H 0.96707 * 113.99780 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9989 1.3540 1.2098 5 1 2.4259 1.1749 2.1195 6 6 4.0600 0.2935 1.0675 7 1 4.7812 0.3553 0.2659 8 6 4.1103 -0.7556 1.9606 9 7 3.3005 -0.7767 2.9967 10 14 5.3288 -2.1473 1.6992 11 1 4.6993 -3.2073 0.8715 12 1 6.5334 -1.6265 1.0043 13 1 5.7222 -2.7142 3.0142 14 6 3.6612 2.7311 1.2870 15 1 4.2705 2.9085 0.4008 16 6 2.5905 3.8353 1.4333 17 6 3.1792 4.7115 2.5625 18 1 2.3811 5.1221 3.1810 19 8 3.9755 5.7636 2.0139 20 8 4.0087 3.7965 3.3381 21 6 4.5040 2.8407 2.5391 22 8 5.4773 2.1674 2.7824 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3565 2.1329 0.0536 27 1 2.6493 1.3864 -0.9157 28 1 3.3361 -1.5145 3.6252 29 1 2.4926 4.4060 0.5099 30 1 1.6323 3.4098 1.7315 31 1 4.3706 6.3451 2.6780 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383845620.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:18 Heat of formation + Delta-G solvation = -124.753866 kcal Electronic energy + Delta-G solvation = -16218.274677 eV Core-core repulsion = 13465.055459 eV Total energy + Delta-G solvation = -2753.219218 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.39293 -37.01454 -35.85285 -35.22357 -32.62996 -32.04838 -28.89137 -26.07709 -24.92900 -22.11812 -21.20754 -19.60689 -18.68481 -17.86472 -16.56949 -16.30848 -15.52592 -15.26345 -14.51518 -14.27762 -13.65688 -13.11815 -13.08237 -12.56492 -12.28790 -11.86254 -11.51186 -11.25477 -11.10771 -10.87229 -10.66299 -10.53508 -10.36692 -10.34225 -10.09676 -9.27142 -9.09950 -8.89172 -8.50339 -8.26858 -5.99872 -4.00424 3.06399 3.24508 3.35218 3.43173 3.47953 3.83199 4.05451 4.48875 4.91079 4.97372 5.09514 5.35906 5.66411 5.73070 5.84404 6.09884 6.14424 6.35996 6.40124 6.60461 6.72557 6.86716 7.08341 7.28362 7.57102 7.59734 7.69340 7.78253 7.93542 8.32822 8.57304 9.05156 9.63690 11.09518 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.011728 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.130506 B = 2386.920043 C = 3259.136817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.084 4.084 3 C -0.084 4.084 4 C 0.049 3.951 5 H 0.076 0.924 6 C -0.506 4.506 7 H 0.054 0.946 8 C 0.077 3.923 9 N -0.889 5.889 10 Si 0.888 3.112 11 H -0.282 1.282 12 H -0.273 1.273 13 H -0.287 1.287 14 C -0.135 4.135 15 H 0.096 0.904 16 C -0.143 4.143 17 C 0.250 3.750 18 H 0.112 0.888 19 O -0.562 6.562 20 O -0.382 6.382 21 C 0.498 3.502 22 O -0.431 6.431 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.261 0.739 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 9.529 -2.591 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.102 4.102 3 C -0.122 4.122 4 C 0.030 3.970 5 H 0.094 0.906 6 C -0.544 4.544 7 H 0.073 0.927 8 C -0.125 4.125 9 N -0.527 5.527 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.197 1.197 13 H -0.213 1.213 14 C -0.155 4.155 15 H 0.114 0.886 16 C -0.180 4.180 17 C 0.155 3.845 18 H 0.129 0.871 19 O -0.370 6.370 20 O -0.303 6.303 21 C 0.338 3.662 22 O -0.311 6.311 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.127 0.873 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.820 8.824 -2.643 9.972 hybrid contribution 0.761 -0.552 0.463 1.048 sum -3.059 8.273 -2.180 9.086 Atomic orbital electron populations 1.23493 0.96112 1.00113 1.08920 1.22970 0.94845 0.99743 0.92629 1.20964 0.97476 0.93336 1.00418 1.18871 0.94423 0.87824 0.95857 0.90620 1.20846 1.13632 1.06907 1.12978 0.92738 1.24844 0.95052 0.98228 0.94424 1.69859 1.38349 1.31775 1.12668 0.86644 0.81958 0.82270 0.77489 1.20843 1.19743 1.21328 1.22776 0.96081 0.99499 0.97130 0.88572 1.23121 1.00196 0.96113 0.98576 1.24454 0.86587 0.82276 0.91182 0.87097 1.86637 1.69776 1.42191 1.38394 1.87123 1.63293 1.40014 1.39867 1.22917 0.82653 0.76768 0.83891 1.90643 1.23553 1.41792 1.75072 0.89926 0.89919 0.87283 0.94313 0.92483 0.92909 0.88891 0.88177 0.76662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.46 14.32 29.01 0.42 -4.05 16 2 C -0.08 -1.71 9.08 -36.03 -0.33 -2.03 16 3 C -0.08 -1.66 4.97 -27.88 -0.14 -1.80 16 4 C 0.05 1.13 1.52 -91.77 -0.14 0.99 16 5 H 0.08 1.98 6.92 -51.93 -0.36 1.62 16 6 C -0.51 -13.47 6.36 -34.45 -0.22 -13.69 16 7 H 0.05 1.48 7.82 -52.48 -0.41 1.06 16 8 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 9 N -0.89 -25.68 12.62 55.43 0.70 -24.98 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C -0.13 -2.74 2.56 -90.68 -0.23 -2.98 16 15 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 16 C -0.14 -2.19 5.51 -25.12 -0.14 -2.33 16 17 C 0.25 3.63 5.05 37.98 0.19 3.82 16 18 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 19 O -0.56 -7.42 13.63 -58.70 -0.80 -8.22 16 20 O -0.38 -7.59 10.99 -46.46 -0.51 -8.10 16 21 C 0.50 11.60 7.75 36.31 0.28 11.88 16 22 O -0.43 -11.79 17.00 -18.41 -0.31 -12.11 16 23 H 0.08 1.38 8.06 -52.49 -0.42 0.96 16 24 H 0.08 1.33 7.84 -52.49 -0.41 0.92 16 25 H 0.11 2.44 7.82 -52.49 -0.41 2.03 16 26 H 0.04 0.66 6.39 -51.93 -0.33 0.33 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 30 H 0.10 1.46 7.27 -51.93 -0.38 1.09 16 31 H 0.38 3.37 9.12 45.56 0.42 3.79 16 LS Contribution 269.75 15.07 4.07 4.07 Total: -1.00 -32.04 269.75 -5.42 -37.46 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.13 Total: 2.93 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.40 Total: -8.13 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.70 Total: -24.98 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.62 Total: -28.43 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.04 -5.42 -37.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383845620.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.299 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds