Wall clock time and date at job start Mon Mar 30 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00130 * 2 1 4 4 C 1.53003 * 109.47294 * 122.99848 * 3 2 1 5 5 H 1.08996 * 109.46779 * 305.50923 * 4 3 2 6 6 C 1.50692 * 109.47170 * 65.50871 * 4 3 2 7 7 H 1.08008 * 119.99757 * 65.12191 * 6 4 3 8 8 C 1.37871 * 120.00238 * 245.12044 * 6 4 3 9 9 N 1.31514 * 120.00055 * 354.67439 * 8 6 4 10 10 Si 1.86807 * 120.00148 * 174.67955 * 8 6 4 11 11 H 1.48494 * 109.46848 * 269.99827 * 10 8 6 12 12 H 1.48499 * 109.47166 * 29.99720 * 10 8 6 13 13 H 1.48499 * 109.46845 * 149.99744 * 10 8 6 14 14 C 1.53002 * 109.46817 * 185.51051 * 4 3 2 15 15 H 1.08996 * 110.33070 * 297.75968 * 14 4 3 16 16 C 1.54499 * 110.36902 * 59.99826 * 14 4 3 17 17 C 1.54573 * 102.14623 * 134.17568 * 16 14 4 18 18 H 1.08999 * 110.44172 * 214.28458 * 17 16 14 19 19 O 1.42900 * 110.43336 * 91.89039 * 17 16 14 20 20 O 1.45839 * 104.44484 * 333.15607 * 17 16 14 21 21 C 1.34061 * 109.90614 * 30.59925 * 20 17 16 22 22 O 1.20826 * 125.09225 * 159.19531 * 21 20 17 23 23 H 1.07993 * 120.00151 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.99932 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.99932 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47249 * 2.99115 * 3 2 1 27 27 H 1.09006 * 109.46774 * 242.99790 * 3 2 1 28 28 H 0.96996 * 120.00532 * 180.02562 * 9 8 6 29 29 H 1.08994 * 110.86908 * 252.34520 * 16 14 4 30 30 H 1.09006 * 110.86444 * 16.01523 * 16 14 4 31 31 H 0.96707 * 113.99780 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9989 1.3540 1.2098 5 1 2.4259 1.1749 2.1195 6 6 4.0600 0.2935 1.0675 7 1 4.7812 0.3553 0.2659 8 6 4.1103 -0.7556 1.9606 9 7 3.3005 -0.7767 2.9967 10 14 5.3288 -2.1473 1.6992 11 1 4.6993 -3.2073 0.8715 12 1 6.5334 -1.6265 1.0043 13 1 5.7222 -2.7142 3.0142 14 6 3.6612 2.7311 1.2870 15 1 4.2705 2.9085 0.4008 16 6 2.5905 3.8353 1.4333 17 6 3.1792 4.7115 2.5625 18 1 2.3811 5.1221 3.1810 19 8 3.9755 5.7636 2.0139 20 8 4.0087 3.7965 3.3381 21 6 4.5040 2.8407 2.5391 22 8 5.4773 2.1674 2.7824 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3565 2.1329 0.0536 27 1 2.6493 1.3864 -0.9157 28 1 3.3361 -1.5145 3.6252 29 1 2.4926 4.4060 0.5099 30 1 1.6323 3.4098 1.7315 31 1 4.3706 6.3451 2.6780 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383845620.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:18 Heat of formation + Delta-G solvation = -147.150160 kcal Electronic energy + Delta-G solvation = -16219.245853 eV Core-core repulsion = 13465.055459 eV Total energy + Delta-G solvation = -2754.190395 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92364 -38.61858 -37.54349 -36.52234 -34.32494 -33.82447 -30.44536 -27.56220 -26.83545 -23.65935 -22.69191 -21.23712 -20.22979 -19.14930 -18.47763 -17.88079 -17.13861 -16.74685 -16.42357 -15.86130 -15.22203 -14.72607 -14.57600 -14.26533 -13.71548 -13.68640 -12.96884 -12.83460 -12.77128 -12.49599 -12.42395 -12.27189 -12.01495 -11.80641 -11.57845 -11.08608 -10.98544 -10.67668 -10.51527 -9.85176 -8.10700 -6.12203 1.33441 1.35314 1.38111 1.45155 1.73436 2.39375 2.44072 2.99995 3.21884 3.47143 3.67450 3.94882 4.30811 4.41614 4.44570 4.62936 4.86847 4.92248 4.99599 5.00706 5.20767 5.26323 5.52695 5.69404 5.78286 5.91015 6.04506 6.20397 6.38431 6.67770 6.81302 6.98438 7.52271 8.97947 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.011728 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.130506 B = 2386.920043 C = 3259.136817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.122 4.122 3 C -0.073 4.073 4 C 0.050 3.950 5 H 0.043 0.957 6 C -0.504 4.504 7 H 0.041 0.959 8 C 0.031 3.969 9 N -0.919 5.919 10 Si 0.928 3.072 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.292 1.292 14 C -0.135 4.135 15 H 0.097 0.903 16 C -0.132 4.132 17 C 0.248 3.752 18 H 0.159 0.841 19 O -0.568 6.568 20 O -0.395 6.395 21 C 0.491 3.509 22 O -0.492 6.492 23 H 0.092 0.908 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.256 0.744 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 11.499 -3.511 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.141 4.141 3 C -0.110 4.110 4 C 0.031 3.969 5 H 0.062 0.938 6 C -0.542 4.542 7 H 0.059 0.941 8 C -0.168 4.168 9 N -0.558 5.558 10 Si 0.755 3.245 11 H -0.194 1.194 12 H -0.202 1.202 13 H -0.218 1.218 14 C -0.155 4.155 15 H 0.115 0.885 16 C -0.169 4.169 17 C 0.155 3.845 18 H 0.176 0.824 19 O -0.378 6.378 20 O -0.316 6.316 21 C 0.333 3.667 22 O -0.376 6.376 23 H 0.110 0.890 24 H 0.129 0.871 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.705 10.835 -3.579 12.757 hybrid contribution 1.290 -1.047 0.722 1.811 sum -4.415 9.788 -2.857 11.111 Atomic orbital electron populations 1.23753 0.95134 1.01911 1.04807 1.22854 0.95914 0.98832 0.96453 1.20808 0.97382 0.94341 0.98492 1.18768 0.93756 0.88277 0.96069 0.93824 1.21154 1.13708 1.07690 1.11696 0.94082 1.25380 0.96493 1.00198 0.94692 1.69957 1.40058 1.32275 1.13559 0.86019 0.80443 0.80879 0.77163 1.19412 1.20201 1.21824 1.22670 0.97151 0.99926 0.95755 0.88512 1.23142 0.98764 0.94505 1.00487 1.24957 0.86707 0.81647 0.91238 0.82370 1.86590 1.69848 1.41886 1.39486 1.87100 1.63737 1.39975 1.40753 1.23528 0.81980 0.76394 0.84814 1.90592 1.26189 1.44103 1.76677 0.88997 0.87111 0.90635 0.90654 0.92265 0.93458 0.85982 0.86847 0.74306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.20 14.32 67.78 0.97 -6.23 16 2 C -0.12 -4.84 9.08 25.65 0.23 -4.61 16 3 C -0.07 -2.73 4.97 29.85 0.15 -2.58 16 4 C 0.05 2.30 1.52 -11.54 -0.02 2.29 16 5 H 0.04 2.29 6.92 -2.39 -0.02 2.28 16 6 C -0.50 -27.48 6.36 25.60 0.16 -27.32 16 7 H 0.04 2.29 7.82 -2.91 -0.02 2.26 16 8 C 0.03 1.79 5.45 84.65 0.46 2.25 16 9 N -0.92 -54.72 12.62 21.45 0.27 -54.45 16 10 Si 0.93 46.55 29.54 68.60 2.03 48.57 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 14 C -0.13 -5.33 2.56 -10.83 -0.03 -5.36 16 15 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 16 C -0.13 -3.54 5.51 31.64 0.17 -3.36 16 17 C 0.25 6.26 5.05 72.52 0.37 6.62 16 18 H 0.16 2.59 8.14 -2.39 -0.02 2.57 16 19 O -0.57 -12.82 13.63 -126.54 -1.72 -14.54 16 20 O -0.39 -15.17 10.99 -42.49 -0.47 -15.64 16 21 C 0.49 22.94 7.75 71.44 0.55 23.50 16 22 O -0.49 -27.86 17.00 21.64 0.37 -27.50 16 23 H 0.09 2.82 8.06 -2.91 -0.02 2.80 16 24 H 0.11 3.03 7.84 -2.91 -0.02 3.01 16 25 H 0.08 3.47 7.82 -2.91 -0.02 3.44 16 26 H 0.08 2.26 6.39 -2.39 -0.02 2.24 16 27 H 0.06 2.16 8.14 -2.38 -0.02 2.15 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.12 2.62 8.11 -2.39 -0.02 2.60 16 30 H 0.11 2.78 7.27 -2.38 -0.02 2.77 16 31 H 0.40 5.62 9.12 -74.05 -0.68 4.95 16 Total: -1.00 -72.70 269.75 3.96 -68.74 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.46 Total: 9.61 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 3.03 Total: -14.80 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.27 Total: -54.45 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -1.82 Total: -57.67 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -72.70 3.96 -68.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383845620.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.407 kcal (2) G-P(sol) polarization free energy of solvation -72.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds