Wall clock time and date at job start Mon Mar 30 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34945 * 126.03847 * 2 1 4 4 C 1.35312 * 107.74515 * 180.14729 * 3 2 1 5 5 C 1.50695 * 126.03745 * 179.87231 * 4 3 2 6 6 S 1.81397 * 109.47452 * 269.71431 * 5 4 3 7 7 C 1.81404 * 103.00143 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46946 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99928 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99611 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00327 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46999 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46979 * 120.00025 * 13 11 9 16 16 H 1.48498 * 109.46942 * 239.99938 * 13 11 9 17 17 C 1.39866 * 107.91945 * 359.61192 * 4 3 2 18 18 N 1.30832 * 108.20688 * 0.24093 * 17 4 3 19 19 H 1.08998 * 109.47176 * 270.25736 * 1 2 3 20 20 H 1.09001 * 109.46889 * 30.25969 * 1 2 3 21 21 H 1.09002 * 109.47228 * 150.26081 * 1 2 3 22 22 H 1.08005 * 126.12255 * 359.97438 * 3 2 1 23 23 H 1.09007 * 109.47042 * 149.71617 * 5 4 3 24 24 H 1.09007 * 109.47150 * 29.72055 * 5 4 3 25 25 H 1.09002 * 109.47124 * 60.00087 * 7 6 5 26 26 H 1.09001 * 109.46975 * 300.00209 * 7 6 5 27 27 H 1.09001 * 109.47194 * 299.99756 * 8 7 6 28 28 H 1.08992 * 109.47399 * 59.99928 * 8 7 6 29 29 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 30 30 H 1.08000 * 125.89518 * 180.26366 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7679 1.5452 -0.0072 6 16 5.2594 1.8899 -1.7190 7 6 6.7242 2.9412 -1.5192 8 6 7.2678 3.3256 -2.8968 9 6 8.4851 4.1985 -2.7307 10 1 8.8355 4.4539 -1.7416 11 6 9.1512 4.6710 -3.8416 12 7 8.7247 4.3595 -5.0460 13 14 10.6596 5.7536 -3.6358 14 1 10.9312 5.9543 -2.1897 15 1 11.8300 5.0978 -4.2725 16 1 10.4169 7.0685 -4.2817 17 6 3.5346 -0.7321 0.0036 18 7 2.2891 -1.1328 0.0056 19 1 -0.3633 0.0046 1.0276 20 1 -0.3633 0.8877 -0.5179 21 1 -0.3634 -0.8923 -0.5098 22 1 1.9281 2.1193 -0.0004 23 1 5.5820 1.0364 0.5091 24 1 4.5441 2.4825 0.5023 25 1 7.4892 2.3971 -0.9652 26 1 6.4518 3.8435 -0.9717 27 1 7.5401 2.4234 -3.4446 28 1 6.5028 3.8698 -3.4504 29 1 9.1935 4.6917 -5.8275 30 1 4.4054 -1.3710 0.0071 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388205661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:30 Heat of formation + Delta-G solvation = 41.562491 kcal Electronic energy + Delta-G solvation = -12468.222263 eV Core-core repulsion = 10197.260685 eV Total energy + Delta-G solvation = -2270.961578 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.12853 -35.73891 -34.60508 -32.85740 -32.60549 -29.02122 -27.34166 -26.27483 -23.13169 -22.03742 -21.25606 -18.64376 -17.81938 -16.87544 -16.49667 -16.26427 -15.67043 -15.37818 -14.99820 -14.70182 -14.34992 -13.87886 -13.56287 -13.42766 -13.26216 -13.08750 -12.89636 -12.37158 -12.13335 -11.73136 -11.57307 -11.32123 -10.73514 -10.59401 -10.38765 -9.28897 -8.53001 -8.20808 -6.34460 0.60486 1.05407 1.42636 1.43207 1.56759 1.67633 1.78946 2.19170 2.42559 3.12280 3.59453 3.94339 4.17129 4.30062 4.34075 4.40941 4.45683 4.46846 4.70332 4.72143 4.84422 4.94671 5.09226 5.41988 5.54151 5.61685 5.76991 6.09791 6.14147 6.67917 6.80651 7.35096 8.91115 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.082820 B = 0.004164 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.002704 B = 6722.331914 C = 6786.022000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.379 5.379 3 C 0.081 3.919 4 C -0.242 4.242 5 C 0.016 3.984 6 S -0.327 6.327 7 C -0.049 4.049 8 C 0.043 3.957 9 C -0.540 4.540 10 H 0.068 0.932 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.258 1.258 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.056 3.944 18 N -0.332 5.332 19 H 0.091 0.909 20 H 0.112 0.888 21 H 0.089 0.911 22 H 0.205 0.795 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.077 0.923 27 H -0.007 1.007 28 H -0.005 1.005 29 H 0.265 0.735 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.507 -5.601 13.064 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.161 5.161 3 C -0.069 4.069 4 C -0.255 4.255 5 C -0.132 4.132 6 S -0.099 6.099 7 C -0.197 4.197 8 C 0.005 3.995 9 C -0.580 4.580 10 H 0.086 0.914 11 C -0.199 4.199 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.182 1.182 15 H -0.204 1.204 16 H -0.203 1.203 17 C -0.131 4.131 18 N -0.154 5.154 19 H 0.110 0.890 20 H 0.131 0.869 21 H 0.108 0.892 22 H 0.222 0.778 23 H 0.112 0.888 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.012 0.988 28 H 0.013 0.987 29 H 0.074 0.926 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.920 -6.942 11.964 21.090 hybrid contribution 1.887 1.482 0.567 2.465 sum -14.033 -5.460 12.531 19.590 Atomic orbital electron populations 1.22225 0.71720 1.05921 1.04844 1.48831 1.08089 1.03271 1.55891 1.22818 0.90316 0.94697 0.99100 1.19511 0.93796 0.93621 1.18529 1.21413 0.97311 1.01505 0.92954 1.87272 1.38606 1.67555 1.16432 1.23291 0.95091 0.99305 1.02039 1.18687 0.94870 0.95108 0.90851 1.21613 1.11957 1.31048 0.93377 0.91363 1.26046 1.01176 0.97903 0.94735 1.70128 1.42038 1.46524 0.98620 0.85286 0.78160 0.77986 0.78910 1.18156 1.20429 1.20319 1.24087 0.95589 0.94902 0.98504 1.77287 1.02141 1.09745 1.26209 0.89039 0.86924 0.89190 0.77805 0.88825 0.88372 0.90681 0.90461 0.98830 0.98671 0.92631 0.78861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.47 127.77 1.47 2.49 16 2 N -0.38 -8.04 4.01 -369.56 -1.48 -9.52 16 3 C 0.08 1.70 11.40 83.54 0.95 2.66 16 4 C -0.24 -6.08 5.36 -20.15 -0.11 -6.19 16 5 C 0.02 0.43 6.42 71.23 0.46 0.89 16 6 S -0.33 -12.29 21.72 -56.49 -1.23 -13.52 16 7 C -0.05 -2.08 5.88 71.98 0.42 -1.66 16 8 C 0.04 2.35 4.98 29.85 0.15 2.50 16 9 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 10 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 11 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 12 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 13 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 17 C 0.06 1.45 11.96 85.24 1.02 2.47 16 18 N -0.33 -8.92 12.58 -57.03 -0.72 -9.64 16 19 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 20 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 21 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 23 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.07 3.00 8.14 -2.39 -0.02 2.99 16 26 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 27 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 28 H -0.01 -0.31 8.14 -2.39 -0.02 -0.32 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.19 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -72.11 279.94 5.04 -67.07 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.11 Total: 3.87 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 5.05 Total: -26.98 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -1.92 Total: -76.46 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -12.29 SS G_CDS: -1.23 Total: -13.52 kcal Total: -72.11 5.04 -67.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388205661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.628 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds