Wall clock time and date at job start Mon Mar 30 2020 03:01:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34945 * 126.03847 * 2 1
4 4 C 1.35312 * 107.74515 * 180.14729 * 3 2 1
5 5 C 1.50695 * 126.03745 * 179.87231 * 4 3 2
6 6 S 1.81397 * 109.47452 * 269.71431 * 5 4 3
7 7 C 1.81404 * 103.00143 * 180.02562 * 6 5 4
8 8 C 1.53000 * 109.46946 * 180.02562 * 7 6 5
9 9 C 1.50706 * 109.46735 * 180.02562 * 8 7 6
10 10 H 1.07996 * 119.99928 * 359.97438 * 9 8 7
11 11 C 1.37880 * 119.99611 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00327 * 359.97438 * 11 9 8
13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 8
14 14 H 1.48500 * 109.46999 * 0.02562 * 13 11 9
15 15 H 1.48504 * 109.46979 * 120.00025 * 13 11 9
16 16 H 1.48498 * 109.46942 * 239.99938 * 13 11 9
17 17 C 1.39866 * 107.91945 * 359.61192 * 4 3 2
18 18 N 1.30832 * 108.20688 * 0.24093 * 17 4 3
19 19 H 1.08998 * 109.47176 * 270.25736 * 1 2 3
20 20 H 1.09001 * 109.46889 * 30.25969 * 1 2 3
21 21 H 1.09002 * 109.47228 * 150.26081 * 1 2 3
22 22 H 1.08005 * 126.12255 * 359.97438 * 3 2 1
23 23 H 1.09007 * 109.47042 * 149.71617 * 5 4 3
24 24 H 1.09007 * 109.47150 * 29.72055 * 5 4 3
25 25 H 1.09002 * 109.47124 * 60.00087 * 7 6 5
26 26 H 1.09001 * 109.46975 * 300.00209 * 7 6 5
27 27 H 1.09001 * 109.47194 * 299.99756 * 8 7 6
28 28 H 1.08992 * 109.47399 * 59.99928 * 8 7 6
29 29 H 0.97000 * 120.00354 * 180.02562 * 12 11 9
30 30 H 1.08000 * 125.89518 * 180.26366 * 17 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2590 1.0912 0.0000
4 6 3.5437 0.6665 -0.0033
5 6 4.7679 1.5452 -0.0072
6 16 5.2594 1.8899 -1.7190
7 6 6.7242 2.9412 -1.5192
8 6 7.2678 3.3256 -2.8968
9 6 8.4851 4.1985 -2.7307
10 1 8.8355 4.4539 -1.7416
11 6 9.1512 4.6710 -3.8416
12 7 8.7247 4.3595 -5.0460
13 14 10.6596 5.7536 -3.6358
14 1 10.9312 5.9543 -2.1897
15 1 11.8300 5.0978 -4.2725
16 1 10.4169 7.0685 -4.2817
17 6 3.5346 -0.7321 0.0036
18 7 2.2891 -1.1328 0.0056
19 1 -0.3633 0.0046 1.0276
20 1 -0.3633 0.8877 -0.5179
21 1 -0.3634 -0.8923 -0.5098
22 1 1.9281 2.1193 -0.0004
23 1 5.5820 1.0364 0.5091
24 1 4.5441 2.4825 0.5023
25 1 7.4892 2.3971 -0.9652
26 1 6.4518 3.8435 -0.9717
27 1 7.5401 2.4234 -3.4446
28 1 6.5028 3.8698 -3.4504
29 1 9.1935 4.6917 -5.8275
30 1 4.4054 -1.3710 0.0071
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000388205661.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:30
Heat of formation + Delta-G solvation = 41.562491 kcal
Electronic energy + Delta-G solvation = -12468.222263 eV
Core-core repulsion = 10197.260685 eV
Total energy + Delta-G solvation = -2270.961578 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-42.12853 -35.73891 -34.60508 -32.85740 -32.60549 -29.02122 -27.34166 -26.27483
-23.13169 -22.03742 -21.25606 -18.64376 -17.81938 -16.87544 -16.49667 -16.26427
-15.67043 -15.37818 -14.99820 -14.70182 -14.34992 -13.87886 -13.56287 -13.42766
-13.26216 -13.08750 -12.89636 -12.37158 -12.13335 -11.73136 -11.57307 -11.32123
-10.73514 -10.59401 -10.38765 -9.28897 -8.53001 -8.20808 -6.34460 0.60486
1.05407 1.42636 1.43207 1.56759 1.67633 1.78946 2.19170 2.42559
3.12280 3.59453 3.94339 4.17129 4.30062 4.34075 4.40941 4.45683
4.46846 4.70332 4.72143 4.84422 4.94671 5.09226 5.41988 5.54151
5.61685 5.76991 6.09791 6.14147 6.67917 6.80651 7.35096 8.91115
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.082820 B = 0.004164 C = 0.004125
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 338.002704 B = 6722.331914 C = 6786.022000
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.092 3.908
2 N -0.379 5.379
3 C 0.081 3.919
4 C -0.242 4.242
5 C 0.016 3.984
6 S -0.327 6.327
7 C -0.049 4.049
8 C 0.043 3.957
9 C -0.540 4.540
10 H 0.068 0.932
11 C 0.000 4.000
12 N -0.933 5.933
13 Si 0.973 3.027
14 H -0.258 1.258
15 H -0.279 1.279
16 H -0.278 1.278
17 C 0.056 3.944
18 N -0.332 5.332
19 H 0.091 0.909
20 H 0.112 0.888
21 H 0.089 0.911
22 H 0.205 0.795
23 H 0.093 0.907
24 H 0.098 0.902
25 H 0.075 0.925
26 H 0.077 0.923
27 H -0.007 1.007
28 H -0.005 1.005
29 H 0.265 0.735
30 H 0.195 0.805
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.507 -5.601 13.064 20.310
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.047 4.047
2 N -0.161 5.161
3 C -0.069 4.069
4 C -0.255 4.255
5 C -0.132 4.132
6 S -0.099 6.099
7 C -0.197 4.197
8 C 0.005 3.995
9 C -0.580 4.580
10 H 0.086 0.914
11 C -0.199 4.199
12 N -0.573 5.573
13 Si 0.797 3.203
14 H -0.182 1.182
15 H -0.204 1.204
16 H -0.203 1.203
17 C -0.131 4.131
18 N -0.154 5.154
19 H 0.110 0.890
20 H 0.131 0.869
21 H 0.108 0.892
22 H 0.222 0.778
23 H 0.112 0.888
24 H 0.116 0.884
25 H 0.093 0.907
26 H 0.095 0.905
27 H 0.012 0.988
28 H 0.013 0.987
29 H 0.074 0.926
30 H 0.211 0.789
Dipole moment (debyes) X Y Z Total
from point charges -15.920 -6.942 11.964 21.090
hybrid contribution 1.887 1.482 0.567 2.465
sum -14.033 -5.460 12.531 19.590
Atomic orbital electron populations
1.22225 0.71720 1.05921 1.04844 1.48831 1.08089 1.03271 1.55891
1.22818 0.90316 0.94697 0.99100 1.19511 0.93796 0.93621 1.18529
1.21413 0.97311 1.01505 0.92954 1.87272 1.38606 1.67555 1.16432
1.23291 0.95091 0.99305 1.02039 1.18687 0.94870 0.95108 0.90851
1.21613 1.11957 1.31048 0.93377 0.91363 1.26046 1.01176 0.97903
0.94735 1.70128 1.42038 1.46524 0.98620 0.85286 0.78160 0.77986
0.78910 1.18156 1.20429 1.20319 1.24087 0.95589 0.94902 0.98504
1.77287 1.02141 1.09745 1.26209 0.89039 0.86924 0.89190 0.77805
0.88825 0.88372 0.90681 0.90461 0.98830 0.98671 0.92631 0.78861
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.02 11.47 127.77 1.47 2.49 16
2 N -0.38 -8.04 4.01 -369.56 -1.48 -9.52 16
3 C 0.08 1.70 11.40 83.54 0.95 2.66 16
4 C -0.24 -6.08 5.36 -20.15 -0.11 -6.19 16
5 C 0.02 0.43 6.42 71.23 0.46 0.89 16
6 S -0.33 -12.29 21.72 -56.49 -1.23 -13.52 16
7 C -0.05 -2.08 5.88 71.98 0.42 -1.66 16
8 C 0.04 2.35 4.98 29.85 0.15 2.50 16
9 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16
10 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16
11 C 0.00 -0.03 5.46 84.66 0.46 0.44 16
12 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16
13 Si 0.97 43.99 29.54 68.60 2.03 46.02 16
14 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16
15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16
16 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16
17 C 0.06 1.45 11.96 85.24 1.02 2.47 16
18 N -0.33 -8.92 12.58 -57.03 -0.72 -9.64 16
19 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
20 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16
21 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
22 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16
23 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16
24 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16
25 H 0.07 3.00 8.14 -2.39 -0.02 2.99 16
26 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16
27 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16
28 H -0.01 -0.31 8.14 -2.39 -0.02 -0.32 16
29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16
30 H 0.19 4.27 8.06 -2.91 -0.02 4.25 16
Total: -1.00 -72.11 279.94 5.04 -67.07
By element:
Atomic # 1 Polarization: 2.76 SS G_CDS: 1.11 Total: 3.87 kcal
Atomic # 6 Polarization: -32.03 SS G_CDS: 5.05 Total: -26.98 kcal
Atomic # 7 Polarization: -74.54 SS G_CDS: -1.92 Total: -76.46 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal
Atomic # 16 Polarization: -12.29 SS G_CDS: -1.23 Total: -13.52 kcal
Total: -72.11 5.04 -67.07 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388205661.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.628 kcal
(2) G-P(sol) polarization free energy of solvation -72.110 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.518 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.065 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds