Wall clock time and date at job start Mon Mar 30 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31517 * 120.00292 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00277 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46965 * 90.00152 * 8 6 4 10 10 H 1.48503 * 109.47392 * 210.00172 * 8 6 4 11 11 H 1.48504 * 109.47211 * 330.00313 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 N 1.29026 * 124.91391 * 89.69760 * 15 14 13 17 17 C 1.31787 * 117.12116 * 179.81148 * 16 15 14 18 18 C 1.33640 * 114.50103 * 0.46986 * 17 16 15 19 19 S 1.70980 * 124.91507 * 269.99853 * 15 14 13 20 20 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 21 21 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 0.96997 * 120.00409 * 180.02562 * 7 6 4 24 24 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 27 27 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 28 28 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 29 29 H 1.07999 * 122.75002 * 180.22486 * 17 16 15 30 30 H 1.07994 * 126.03961 * 179.71332 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 6 2.6589 0.4055 -4.7518 16 7 3.6821 1.1252 -5.0678 17 6 3.5712 1.8918 -6.1341 18 6 2.3852 1.8218 -6.7460 19 16 1.3834 0.6764 -5.8577 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9034 -0.5279 4.4375 24 1 1.4495 -1.4979 -1.4101 25 1 1.0871 0.6163 -2.5526 26 1 2.7589 1.0462 -2.1182 27 1 3.5904 -0.9271 -3.3691 28 1 1.9183 -1.3564 -3.8030 29 1 4.3717 2.5276 -6.4823 30 1 2.0923 2.3708 -7.6287 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388672610.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:42 Heat of formation + Delta-G solvation = 47.079664 kcal Electronic energy + Delta-G solvation = -13043.974374 eV Core-core repulsion = 10773.252038 eV Total energy + Delta-G solvation = -2270.722335 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.70634 -36.64972 -33.52920 -31.81914 -29.78768 -27.71812 -25.13996 -24.44028 -22.05188 -20.28960 -19.89422 -17.98627 -16.68811 -15.71769 -15.09873 -14.93236 -14.59624 -14.00990 -13.85457 -13.12405 -12.91515 -12.52507 -12.19572 -11.81929 -11.67609 -11.60169 -11.08445 -10.77876 -10.47989 -10.11790 -9.68221 -9.52664 -9.46695 -9.16890 -8.92711 -8.55403 -7.47417 -6.03054 -4.00462 0.62586 1.28141 1.66998 2.77575 3.26177 3.36762 3.39333 4.08415 4.41652 4.87008 5.02574 5.23149 5.26967 5.27644 5.39457 5.53657 5.74120 6.07105 6.17077 6.21131 6.21882 6.35901 6.50002 6.74384 7.10472 7.69451 7.70829 7.87992 8.29417 8.69843 9.08341 9.59462 11.10517 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.052622 B = 0.005388 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.974171 B = 5195.129888 C = 5290.642415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.183 3.817 3 H 0.034 0.966 4 C -0.498 4.498 5 H 0.083 0.917 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.670 5.670 13 C 0.066 3.934 14 C -0.046 4.046 15 C 0.071 3.929 16 N -0.476 5.476 17 C 0.042 3.958 18 C -0.271 4.271 19 S 0.109 5.891 20 H 0.026 0.974 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.263 0.737 24 H 0.331 0.669 25 H 0.021 0.979 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.174 0.826 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 4.159 -19.723 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.074 3.926 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.101 0.899 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.300 5.300 13 C -0.065 4.065 14 C -0.087 4.087 15 C -0.208 4.208 16 N -0.190 5.190 17 C -0.110 4.110 18 C -0.410 4.410 19 S 0.362 5.638 20 H 0.045 0.955 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.148 0.852 25 H 0.039 0.961 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.102 0.898 29 H 0.191 0.809 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.603 3.836 -19.141 19.694 hybrid contribution -0.961 1.648 -0.404 1.950 sum -3.564 5.483 -19.545 20.610 Atomic orbital electron populations 1.22860 1.01454 1.00954 0.98909 1.19652 0.88580 0.95179 0.89195 0.94808 1.20977 1.31193 1.13782 0.87686 0.89939 1.24933 0.96003 0.96577 0.95882 1.69881 1.45885 1.40380 0.97826 0.86905 0.80555 0.84018 0.76904 1.20777 1.22394 1.19529 1.60590 1.58047 1.08746 1.02578 1.21899 0.98544 0.96199 0.89882 1.20360 1.05017 0.94597 0.88738 1.27275 0.91615 1.00685 1.01206 1.66321 1.28745 1.07952 1.15993 1.21851 0.97511 0.99572 0.92029 1.27031 0.98210 1.07871 1.07888 1.84053 1.19899 1.37967 1.21834 0.95518 0.92606 0.93603 0.92689 0.85154 0.96136 0.90850 0.87614 0.89823 0.80878 0.80803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.90 8.64 37.16 0.32 -3.58 16 2 C 0.18 4.31 2.17 -68.86 -0.15 4.16 16 3 H 0.03 0.84 6.86 -51.93 -0.36 0.49 16 4 C -0.50 -14.08 9.42 -34.44 -0.32 -14.41 16 5 H 0.08 2.56 8.06 -52.48 -0.42 2.13 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 8 Si 0.89 22.07 24.37 -169.99 -4.14 17.92 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 10 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.67 -13.33 6.23 -107.94 -0.67 -14.01 16 13 C 0.07 1.11 5.47 -3.82 -0.02 1.09 16 14 C -0.05 -0.63 6.06 -27.88 -0.17 -0.80 16 15 C 0.07 0.95 6.64 -13.46 -0.09 0.86 16 16 N -0.48 -6.87 10.54 -11.86 -0.13 -7.00 16 17 C 0.04 0.47 11.35 -19.18 -0.22 0.26 16 18 C -0.27 -2.67 11.37 29.12 0.33 -2.33 16 19 S 0.11 1.18 23.18 -107.50 -2.49 -1.31 16 20 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 21 H 0.05 1.14 8.13 -51.93 -0.42 0.72 16 22 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.33 6.00 8.47 -39.29 -0.33 5.67 16 25 H 0.02 0.33 7.44 -51.93 -0.39 -0.06 16 26 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 27 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -31.38 263.79 -6.87 -38.25 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.77 Total: 2.05 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.42 Total: -12.90 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.02 Total: -47.98 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.92 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.38 -6.87 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388672610.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.328 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds