Wall clock time and date at job start Mon Mar 30 2020 02:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31517 * 120.00292 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00277 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46965 * 90.00152 * 8 6 4 10 10 H 1.48503 * 109.47392 * 210.00172 * 8 6 4 11 11 H 1.48504 * 109.47211 * 330.00313 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 N 1.29026 * 124.91391 * 89.69760 * 15 14 13 17 17 C 1.31787 * 117.12116 * 179.81148 * 16 15 14 18 18 C 1.33640 * 114.50103 * 0.46986 * 17 16 15 19 19 S 1.70980 * 124.91507 * 269.99853 * 15 14 13 20 20 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 21 21 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 0.96997 * 120.00409 * 180.02562 * 7 6 4 24 24 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 27 27 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 28 28 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 29 29 H 1.07999 * 122.75002 * 180.22486 * 17 16 15 30 30 H 1.07994 * 126.03961 * 179.71332 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 6 2.6589 0.4055 -4.7518 16 7 3.6821 1.1252 -5.0678 17 6 3.5712 1.8918 -6.1341 18 6 2.3852 1.8218 -6.7460 19 16 1.3834 0.6764 -5.8577 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9034 -0.5279 4.4375 24 1 1.4495 -1.4979 -1.4101 25 1 1.0871 0.6163 -2.5526 26 1 2.7589 1.0462 -2.1182 27 1 3.5904 -0.9271 -3.3691 28 1 1.9183 -1.3564 -3.8030 29 1 4.3717 2.5276 -6.4823 30 1 2.0923 2.3708 -7.6287 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388672610.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:41 Heat of formation + Delta-G solvation = 23.443221 kcal Electronic energy + Delta-G solvation = -13044.999327 eV Core-core repulsion = 10773.252038 eV Total energy + Delta-G solvation = -2271.747288 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.61523 -38.26233 -35.15123 -33.59340 -31.11235 -28.96922 -27.12438 -25.57456 -23.27898 -22.13333 -20.81878 -18.95822 -18.71491 -16.96863 -16.66753 -16.30506 -15.77128 -15.40000 -15.11031 -14.58255 -14.39499 -14.18000 -13.76272 -13.38108 -13.13041 -12.78111 -12.41635 -12.35118 -12.09847 -11.99694 -11.47049 -11.20903 -10.74849 -10.57837 -10.35542 -9.80551 -9.06888 -8.26234 -6.28722 -0.24489 0.43832 0.82112 1.29376 1.36008 1.45573 1.88684 2.32749 3.07833 3.09426 3.65491 4.05600 4.12960 4.31882 4.41032 4.46303 4.55669 4.57373 4.60393 4.69432 4.93170 4.97664 5.11738 5.24976 5.39063 5.67207 5.99794 6.65941 6.75979 6.79645 6.82905 7.36307 8.91226 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.052622 B = 0.005388 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.974171 B = 5195.129888 C = 5290.642415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.186 3.814 3 H 0.023 0.977 4 C -0.504 4.504 5 H 0.037 0.963 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.952 3.048 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.254 1.254 12 N -0.683 5.683 13 C 0.074 3.926 14 C -0.036 4.036 15 C 0.038 3.962 16 N -0.509 5.509 17 C 0.017 3.983 18 C -0.253 4.253 19 S 0.146 5.854 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.035 0.965 23 H 0.265 0.735 24 H 0.342 0.658 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.195 0.805 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 5.646 -22.156 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.077 3.923 3 H 0.041 0.959 4 C -0.543 4.543 5 H 0.056 0.944 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.227 1.227 11 H -0.178 1.178 12 N -0.314 5.314 13 C -0.057 4.057 14 C -0.077 4.077 15 C -0.240 4.240 16 N -0.225 5.225 17 C -0.133 4.133 18 C -0.392 4.392 19 S 0.399 5.601 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.161 0.839 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.211 0.789 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.515 5.311 -21.608 22.704 hybrid contribution -0.297 1.140 0.233 1.201 sum -4.813 6.451 -21.375 22.840 Atomic orbital electron populations 1.22710 0.99044 1.01779 1.00012 1.19411 0.90317 0.93920 0.88691 0.95907 1.21280 1.30285 1.12592 0.90147 0.94443 1.25801 0.97611 0.99997 0.95384 1.70043 1.47973 1.42638 0.98535 0.85821 0.79230 0.79964 0.77091 1.18929 1.22709 1.17793 1.60372 1.58479 1.09668 1.02892 1.21815 0.98886 0.95303 0.89696 1.20169 1.04557 0.95035 0.87972 1.27101 0.93025 1.01581 1.02279 1.66300 1.30018 1.08707 1.17468 1.22219 0.99060 1.00151 0.91881 1.27502 0.97166 1.06545 1.08013 1.83867 1.18259 1.37512 1.20460 0.92066 0.92052 0.94627 0.92589 0.83910 0.94645 0.93071 0.89190 0.87572 0.78871 0.77389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.06 8.64 71.98 0.62 -6.44 16 2 C 0.19 8.64 2.17 44.17 0.10 8.74 16 3 H 0.02 1.12 6.86 -2.39 -0.02 1.10 16 4 C -0.50 -29.19 9.42 25.60 0.24 -28.95 16 5 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 6 C 0.01 0.51 5.45 84.65 0.46 0.97 16 7 N -0.95 -60.26 13.96 21.44 0.30 -59.96 16 8 Si 0.95 45.24 24.37 68.60 1.67 46.91 16 9 H -0.26 -11.73 6.87 99.48 0.68 -11.05 16 10 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 11 H -0.25 -11.29 6.53 99.48 0.65 -10.64 16 12 N -0.68 -26.85 6.23 -495.42 -3.09 -29.94 16 13 C 0.07 2.39 5.47 86.30 0.47 2.86 16 14 C -0.04 -0.96 6.06 29.85 0.18 -0.78 16 15 C 0.04 0.96 6.64 88.52 0.59 1.54 16 16 N -0.51 -14.19 10.54 -191.44 -2.02 -16.21 16 17 C 0.02 0.35 11.35 83.66 0.95 1.30 16 18 C -0.25 -4.12 11.37 66.78 0.76 -3.36 16 19 S 0.15 2.72 23.18 -56.49 -1.31 1.41 16 20 H 0.06 2.02 7.45 -2.39 -0.02 2.00 16 21 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 22 H 0.04 1.49 3.27 -2.39 -0.01 1.48 16 23 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 24 H 0.34 12.05 8.47 -89.69 -0.76 11.29 16 25 H 0.04 1.04 7.44 -2.39 -0.02 1.02 16 26 H 0.05 1.86 8.05 -2.39 -0.02 1.85 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 30 H 0.21 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -69.38 263.79 0.23 -69.15 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.30 Total: 12.74 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 4.37 Total: -24.10 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -4.81 Total: -106.11 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.31 Total: 1.41 kcal Total: -69.38 0.23 -69.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388672610.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.595 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds