Wall clock time and date at job start Mon Mar 30 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47151 * 2 1 4 4 C 1.50696 * 109.47479 * 239.99868 * 2 1 3 5 5 H 1.08002 * 119.99848 * 239.99997 * 4 2 1 6 6 C 1.37871 * 120.00010 * 59.99714 * 4 2 1 7 7 N 1.31510 * 120.00161 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99996 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47276 * 90.00001 * 8 6 4 10 10 H 1.48502 * 109.47066 * 210.00055 * 8 6 4 11 11 H 1.48497 * 109.46959 * 329.99918 * 8 6 4 12 12 N 1.46897 * 109.47007 * 119.99440 * 2 1 3 13 13 C 1.46899 * 111.00223 * 205.66651 * 12 2 1 14 14 H 1.08996 * 109.47092 * 325.50787 * 13 12 2 15 15 C 1.53004 * 109.47261 * 85.50709 * 13 12 2 16 16 C 1.50703 * 109.47254 * 205.51093 * 13 12 2 17 17 C 1.33645 * 126.03868 * 140.02757 * 16 13 12 18 18 N 1.31775 * 114.49904 * 179.97438 * 17 16 13 19 19 C 1.29033 * 117.12641 * 359.97438 * 18 17 16 20 20 S 1.70972 * 110.16539 * 0.02562 * 19 18 17 21 21 H 1.09005 * 109.46763 * 174.32785 * 1 2 3 22 22 H 1.09002 * 109.47422 * 294.32853 * 1 2 3 23 23 H 1.08995 * 109.46920 * 54.32979 * 1 2 3 24 24 H 0.97005 * 120.00336 * 180.02562 * 7 6 4 25 25 H 1.00899 * 111.00026 * 81.71362 * 12 2 1 26 26 H 1.08996 * 109.47144 * 304.44007 * 15 13 12 27 27 H 1.08996 * 109.46749 * 64.43609 * 15 13 12 28 28 H 1.09000 * 109.46961 * 184.43403 * 15 13 12 29 29 H 1.07999 * 122.74556 * 359.97438 * 17 16 13 30 30 H 1.08001 * 124.91498 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 1.3431 -2.1619 -4.4117 10 1 2.4868 -0.1415 -5.1122 11 1 3.6295 -1.7583 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 3.3605 -0.2201 1.5695 14 1 3.9242 0.0166 0.6672 15 6 3.2381 1.0337 2.4379 16 6 4.0775 -1.2978 2.3414 17 6 5.3679 -1.6243 2.2221 18 7 5.7587 -2.6047 3.0111 19 6 4.8699 -3.1231 3.7897 20 16 3.3627 -2.3491 3.5613 21 1 -0.3633 -1.0227 -0.1016 22 1 -0.3634 0.4234 0.9364 23 1 -0.3633 0.5992 -0.8348 24 1 0.7090 1.1612 -3.4844 25 1 2.0122 -1.6927 1.0679 26 1 2.6514 1.7854 1.9099 27 1 2.7436 0.7794 3.3753 28 1 4.2320 1.4293 2.6470 29 1 6.0357 -1.1254 1.5354 30 1 5.0517 -3.9298 4.4844 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388786302.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:54 Heat of formation + Delta-G solvation = 19.354021 kcal Electronic energy + Delta-G solvation = -13514.028134 eV Core-core repulsion = 11242.103525 eV Total energy + Delta-G solvation = -2271.924609 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58623 -38.24219 -35.21412 -32.81002 -30.08992 -28.88210 -27.16261 -26.28389 -23.08165 -21.78963 -20.89264 -19.01062 -18.48779 -17.01400 -16.48329 -16.14216 -15.53666 -15.02113 -14.78146 -14.45988 -14.26720 -13.57334 -13.38887 -12.99531 -12.88497 -12.76687 -12.51911 -12.27977 -12.11249 -11.97804 -11.84983 -11.12557 -10.54905 -10.51920 -10.13368 -9.82243 -9.20367 -8.10549 -6.30456 -0.16970 0.49865 0.92959 1.36355 1.38578 1.46956 1.89889 2.37978 3.12356 3.42940 3.59503 3.88179 4.40968 4.47749 4.48997 4.65690 4.83996 4.92970 5.04580 5.16332 5.20976 5.24378 5.36503 5.48184 5.66143 6.03649 6.11799 6.29695 6.69703 6.77934 6.93944 7.41090 8.88683 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.007874 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.308064 B = 3555.318277 C = 3953.306213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H 0.010 0.990 4 C -0.559 4.559 5 H 0.047 0.953 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.161 3.839 14 H 0.043 0.957 15 C -0.124 4.124 16 C -0.221 4.221 17 C 0.016 3.984 18 N -0.499 5.499 19 C 0.004 3.996 20 S 0.178 5.822 21 H 0.024 0.976 22 H 0.032 0.968 23 H 0.055 0.945 24 H 0.263 0.737 25 H 0.329 0.671 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.174 0.826 30 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -4.909 11.636 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H 0.028 0.972 4 C -0.598 4.598 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.199 1.199 12 N -0.304 5.304 13 C 0.049 3.951 14 H 0.061 0.939 15 C -0.182 4.182 16 C -0.343 4.343 17 C -0.136 4.136 18 N -0.213 5.213 19 C -0.293 4.293 20 S 0.430 5.570 21 H 0.043 0.957 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.146 0.854 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.191 0.809 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.987 -4.717 12.426 13.876 hybrid contribution 1.365 -0.246 -2.516 2.873 sum 5.352 -4.964 9.910 12.308 Atomic orbital electron populations 1.21508 0.97341 0.99205 0.99022 1.18975 0.92634 0.92903 0.84939 0.97165 1.22070 1.31923 1.12714 0.93058 0.93520 1.25611 0.95026 0.95486 1.01600 1.70000 1.37100 1.23661 1.24145 0.85718 0.78690 0.78524 0.79660 1.20127 1.20739 1.19927 1.61119 1.21691 1.09391 1.38210 1.19785 0.88989 0.91557 0.94791 0.93947 1.21727 1.01612 0.95553 0.99308 1.26225 0.98223 1.05081 1.04799 1.21862 0.94058 0.96612 1.01032 1.66368 1.36660 1.10705 1.07574 1.29025 0.92352 1.05101 1.02780 1.83976 1.13642 1.27042 1.32312 0.95698 0.94927 0.92644 0.92766 0.85435 0.93215 0.91762 0.91394 0.80916 0.75143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.41 9.21 71.98 0.66 -4.75 16 2 C 0.21 10.51 2.38 44.17 0.11 10.62 16 3 H 0.01 0.56 7.14 -2.39 -0.02 0.54 16 4 C -0.56 -29.96 8.30 25.60 0.21 -29.75 16 5 H 0.05 2.51 7.73 -2.91 -0.02 2.49 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -51.42 11.38 21.44 0.24 -51.18 16 8 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 12 N -0.67 -27.45 5.89 -477.16 -2.81 -30.26 16 13 C 0.16 5.84 2.88 44.17 0.13 5.97 16 14 H 0.04 1.77 7.65 -2.39 -0.02 1.75 16 15 C -0.12 -3.94 9.40 71.98 0.68 -3.27 16 16 C -0.22 -6.94 5.20 24.64 0.13 -6.81 16 17 C 0.02 0.48 11.24 83.66 0.94 1.42 16 18 N -0.50 -14.51 10.54 -203.75 -2.15 -16.66 16 19 C 0.00 0.10 12.23 130.65 1.60 1.69 16 20 S 0.18 4.42 22.85 -56.49 -1.29 3.13 16 21 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.05 2.93 6.24 -2.39 -0.01 2.91 16 24 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 25 H 0.33 13.49 7.84 -89.69 -0.70 12.79 16 26 H 0.05 1.73 7.43 -2.39 -0.02 1.71 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.17 5.02 8.06 -2.91 -0.02 4.99 16 30 H 0.23 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -59.41 268.69 1.35 -58.06 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.43 Total: 14.79 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 4.90 Total: -23.16 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -4.72 Total: -98.10 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.29 Total: 3.13 kcal Total: -59.41 1.35 -58.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388786302.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.411 kcal (2) G-P(sol) polarization free energy of solvation -59.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds