Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99699 * 2 1 4 4 C 1.53007 * 109.47070 * 269.99861 * 3 2 1 5 5 C 1.52996 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47131 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99520 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99935 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99470 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00085 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47349 * 89.99885 * 10 8 6 12 12 H 1.48497 * 109.46988 * 209.99514 * 10 8 6 13 13 H 1.48498 * 109.47580 * 329.99684 * 10 8 6 14 14 C 1.38609 * 119.99983 * 179.97438 * 2 1 3 15 15 N 1.29689 * 124.94704 * 179.97438 * 14 2 1 16 16 C 1.32119 * 116.86486 * 180.02562 * 15 14 2 17 17 C 1.33320 * 114.58192 * 359.97438 * 16 15 14 18 18 S 1.70961 * 124.95151 * 0.02562 * 14 2 1 19 19 H 1.09000 * 109.46767 * 269.99867 * 1 2 3 20 20 H 1.09000 * 109.47198 * 30.00156 * 1 2 3 21 21 H 1.08999 * 109.46749 * 149.99872 * 1 2 3 22 22 H 1.09000 * 109.47027 * 30.00133 * 3 2 1 23 23 H 1.09001 * 109.47083 * 149.99931 * 3 2 1 24 24 H 1.08999 * 109.46725 * 300.00314 * 4 3 2 25 25 H 1.08997 * 109.46670 * 60.00244 * 4 3 2 26 26 H 1.09004 * 109.47641 * 300.00250 * 5 4 3 27 27 H 1.09001 * 109.47096 * 60.00149 * 5 4 3 28 28 H 0.96998 * 119.99643 * 180.02562 * 9 8 6 29 29 H 1.07998 * 122.70404 * 179.97438 * 16 15 14 30 30 H 1.08003 * 125.95439 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4426 5 6 3.2169 3.0358 -1.4425 6 6 3.4686 3.4706 -2.8634 7 1 3.1181 2.8625 -3.6842 8 6 4.1455 4.6450 -3.1153 9 7 4.3656 5.0241 -4.3552 10 14 4.7512 5.6969 -1.6955 11 1 6.1247 5.2767 -1.3187 12 1 4.7656 7.1236 -2.1074 13 1 3.8448 5.5270 -0.5315 14 6 2.1581 -1.2004 0.0005 15 7 3.4502 -1.3122 0.0001 16 6 3.9433 -2.5379 0.0002 17 6 3.0256 -3.5050 0.0013 18 16 1.4343 -2.7492 0.0006 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 1.6084 2.0284 0.5139 23 1 3.1499 1.1385 0.5138 24 1 3.0416 0.9508 -1.9563 25 1 1.5001 1.8407 -1.9563 26 1 2.6274 3.7953 -0.9288 27 1 4.1693 2.9059 -0.9286 28 1 4.8421 5.8501 -4.5325 29 1 5.0042 -2.7400 -0.0005 30 1 3.2233 -4.5668 0.0020 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393723334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = 24.131620 kcal Electronic energy + Delta-G solvation = -13130.407080 eV Core-core repulsion = 10858.689643 eV Total energy + Delta-G solvation = -2271.717437 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56612 -38.11773 -35.65649 -33.65829 -30.67007 -29.57927 -27.28603 -25.66951 -23.53013 -22.05386 -20.63026 -19.29341 -18.84815 -17.15526 -16.49526 -16.17724 -16.00908 -15.59244 -15.24532 -14.82450 -14.40300 -13.87407 -13.80045 -13.46680 -13.19337 -12.86455 -12.49481 -12.24514 -11.91120 -11.79921 -11.51564 -11.38896 -10.89647 -10.77335 -10.43009 -10.09447 -8.49759 -8.30232 -6.35208 0.13253 0.25707 0.94088 1.36671 1.38490 1.50692 1.99784 2.13306 2.36372 3.05075 3.70515 4.07172 4.24920 4.29387 4.55991 4.57776 4.60303 4.72617 4.79089 4.81270 4.91041 5.04034 5.25449 5.48570 5.53155 5.64256 5.86390 6.07306 6.27726 6.72340 7.11815 7.29304 8.86916 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.005793 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.331803 B = 4831.846524 C = 5042.647644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.588 5.588 3 C 0.140 3.860 4 C -0.100 4.100 5 C -0.006 4.006 6 C -0.535 4.535 7 H 0.023 0.977 8 C 0.002 3.998 9 N -0.954 5.954 10 Si 0.956 3.044 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.239 1.239 14 C 0.298 3.702 15 N -0.594 5.594 16 C 0.065 3.935 17 C -0.304 4.304 18 S 0.112 5.888 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.074 0.926 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.032 0.968 27 H 0.015 0.985 28 H 0.267 0.733 29 H 0.186 0.814 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.210 -14.971 13.743 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.306 5.306 3 C 0.015 3.985 4 C -0.139 4.139 5 C -0.044 4.044 6 C -0.573 4.573 7 H 0.042 0.958 8 C -0.195 4.195 9 N -0.595 5.595 10 Si 0.778 3.222 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.162 1.162 14 C -0.071 4.071 15 N -0.321 5.321 16 C -0.085 4.085 17 C -0.445 4.445 18 S 0.360 5.640 19 H 0.099 0.901 20 H 0.109 0.891 21 H 0.093 0.907 22 H 0.118 0.882 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.203 0.797 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.978 -14.589 13.656 21.908 hybrid contribution 1.583 0.463 -0.365 1.690 sum -7.395 -14.126 13.291 20.757 Atomic orbital electron populations 1.22052 0.75694 1.04352 1.03513 1.46264 1.06181 1.01091 1.77048 1.21505 0.97212 0.83502 0.96265 1.21602 0.99220 0.96631 0.96492 1.19437 0.95872 0.94396 0.94732 1.21482 1.36183 1.06715 0.92895 0.95819 1.26092 0.95578 0.99100 0.98711 1.70084 1.43261 1.24557 1.21576 0.85581 0.79589 0.77209 0.79806 1.19527 1.20753 1.16204 1.24061 0.91452 0.93191 0.98384 1.66428 1.10215 1.27182 1.28307 1.21738 1.02264 0.85073 0.99386 1.26810 0.92778 1.05421 1.19533 1.83454 1.10455 0.96269 1.73863 0.90133 0.89115 0.90695 0.88197 0.91308 0.95423 0.93062 0.94993 0.96659 0.92460 0.79688 0.78218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.64 10.41 127.77 1.33 2.97 16 2 N -0.59 -16.61 2.98 -735.77 -2.19 -18.80 16 3 C 0.14 4.50 5.53 86.38 0.48 4.98 16 4 C -0.10 -4.13 5.48 30.60 0.17 -3.97 16 5 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 6 C -0.53 -32.18 9.66 25.60 0.25 -31.93 16 7 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 8 C 0.00 0.09 5.47 84.65 0.46 0.56 16 9 N -0.95 -61.57 13.96 21.45 0.30 -61.27 16 10 Si 0.96 45.03 27.47 68.60 1.88 46.91 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 14 C 0.30 8.98 7.74 179.32 1.39 10.37 16 15 N -0.59 -20.15 9.82 -202.04 -1.98 -22.13 16 16 C 0.06 1.74 11.34 83.54 0.95 2.68 16 17 C -0.30 -6.59 11.34 66.71 0.76 -5.84 16 18 S 0.11 2.50 21.69 -56.49 -1.23 1.27 16 19 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 20 H 0.09 1.63 8.07 -2.39 -0.02 1.61 16 21 H 0.07 1.28 7.04 -2.39 -0.02 1.26 16 22 H 0.10 2.67 8.07 -2.39 -0.02 2.65 16 23 H 0.07 2.41 7.62 -2.39 -0.02 2.39 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.03 1.43 7.20 -2.39 -0.02 1.42 16 27 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 28 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 29 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -73.36 270.08 3.74 -69.62 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.06 Total: 4.75 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 5.90 Total: -20.37 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -3.88 Total: -102.19 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.23 Total: 1.27 kcal Total: -73.36 3.74 -69.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393723334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.757 kcal (2) G-P(sol) polarization free energy of solvation -73.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds