Wall clock time and date at job start Mon Mar 30 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48500 * 109.47221 * 270.00236 * 3 2 1 5 5 H 1.48499 * 109.47257 * 29.99883 * 3 2 1 6 6 H 1.48497 * 109.47126 * 149.99918 * 3 2 1 7 7 C 1.37877 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00349 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99828 * 179.97438 * 10 9 7 12 12 O 1.21270 * 120.00369 * 359.97438 * 11 10 9 13 13 C 1.50710 * 119.99613 * 179.97438 * 11 10 9 14 14 N 1.46900 * 109.46730 * 180.02562 * 13 11 10 15 15 C 1.48624 * 110.99623 * 170.00204 * 14 13 11 16 16 C 1.54922 * 102.81649 * 158.55636 * 15 14 13 17 17 C 1.52177 * 103.31507 * 322.80808 * 16 15 14 18 18 O 1.20759 * 127.08918 * 202.18962 * 17 16 15 19 19 C 1.47901 * 110.99729 * 286.80518 * 14 13 11 20 20 H 0.97003 * 119.99771 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47180 * 59.99745 * 9 7 2 22 22 H 1.09002 * 109.46949 * 300.00195 * 9 7 2 23 23 H 0.97002 * 119.99976 * 0.02562 * 10 9 7 24 24 H 1.08996 * 109.47219 * 60.00109 * 13 11 10 25 25 H 1.09000 * 109.46970 * 300.00220 * 13 11 10 26 26 H 1.08997 * 110.74477 * 40.22633 * 15 14 13 27 27 H 1.09002 * 110.74508 * 276.88394 * 15 14 13 28 28 H 1.09002 * 110.67967 * 81.31462 * 16 15 14 29 29 H 1.08999 * 110.68063 * 204.31175 * 16 15 14 30 30 H 1.09003 * 109.87037 * 334.37447 * 19 14 13 31 31 H 1.08998 * 109.86661 * 95.34595 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0020 13 6 2.7331 -6.0288 0.0005 14 7 1.9986 -7.3010 0.0006 15 6 2.9156 -8.4454 -0.2409 16 6 2.1249 -9.6468 0.3349 17 6 1.4410 -9.0607 1.5615 18 8 1.0279 -9.6637 2.5228 19 6 1.3884 -7.5605 1.3226 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 3.3604 -5.9709 0.8899 25 1 3.3591 -5.9711 -0.8900 26 1 3.8542 -8.3080 0.2961 27 1 3.0956 -8.5775 -1.3078 28 1 1.3870 -10.0022 -0.3843 29 1 2.8018 -10.4522 0.6198 30 1 1.9519 -7.0426 2.0988 31 1 0.3533 -7.2191 1.3263 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396448041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:48 Heat of formation + Delta-G solvation = -64.998213 kcal Electronic energy + Delta-G solvation = -15121.259018 eV Core-core repulsion = 12402.923751 eV Total energy + Delta-G solvation = -2718.335268 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14288 -38.76279 -37.06220 -34.16624 -32.37527 -31.51118 -28.68979 -27.60032 -25.61369 -22.61031 -21.58662 -20.07276 -19.60902 -17.19080 -16.53061 -16.49567 -15.60403 -15.22721 -14.95526 -14.69184 -14.33847 -13.90652 -13.56966 -13.38747 -12.91995 -12.42536 -12.07704 -11.98139 -11.88600 -11.68247 -11.32337 -10.99286 -10.88110 -10.33218 -9.71013 -9.41565 -9.15414 -8.75154 -8.54547 -7.89396 -6.18190 -4.25366 1.71206 3.22956 3.28966 3.31194 3.33431 3.50731 3.90845 4.15564 4.33722 4.40992 4.63567 4.86237 5.12565 5.18056 5.26436 5.34103 5.40127 5.52426 5.53805 5.62666 5.86230 6.51239 6.65508 7.27232 7.29732 7.41988 7.50387 7.65105 7.95513 8.60644 8.76903 9.09172 9.41507 10.92005 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.066419 B = 0.004670 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.463727 B = 5994.427495 C = 6171.551209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.497 3.503 12 O -0.538 6.538 13 C 0.024 3.976 14 N -0.485 5.485 15 C 0.035 3.965 16 C -0.183 4.183 17 C 0.368 3.632 18 O -0.443 6.443 19 C -0.020 4.020 20 H 0.266 0.734 21 H 0.027 0.973 22 H 0.026 0.974 23 H 0.390 0.610 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.878 -14.532 -0.436 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.281 3.719 12 O -0.415 6.415 13 C -0.107 4.107 14 N -0.211 5.211 15 C -0.093 4.093 16 C -0.221 4.221 17 C 0.242 3.758 18 O -0.314 6.314 19 C -0.148 4.148 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.222 0.778 24 H 0.082 0.918 25 H 0.123 0.877 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.211 -14.807 -0.325 16.473 hybrid contribution 1.584 1.173 0.484 2.029 sum 8.795 -13.635 0.159 16.226 Atomic orbital electron populations 1.69974 1.06124 1.27331 1.48817 1.24952 0.94904 0.99457 0.94681 0.86416 0.79603 0.82658 0.78230 1.20444 1.21000 1.19768 1.21224 0.93245 0.90475 1.53311 0.91918 1.19091 0.88270 0.81873 0.97740 1.46447 1.11090 1.06059 1.72812 1.20226 0.89512 0.84044 0.78122 1.90658 1.16555 1.84615 1.49710 1.22310 0.95602 0.89637 1.03183 1.64713 1.28122 1.00750 1.27469 1.23293 0.94264 0.89316 1.02423 1.23089 1.01458 0.99176 0.98336 1.25216 0.73207 0.91821 0.85554 1.90436 1.39429 1.69427 1.32150 1.23481 1.04867 0.95103 0.91373 0.92421 0.95502 0.95592 0.77814 0.91764 0.87703 0.92857 0.88499 0.86795 0.88459 0.90402 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.54 5.43 -5.20 -0.03 6.52 16 10 N -0.71 -14.42 5.55 -61.47 -0.34 -14.77 16 11 C 0.50 9.43 7.66 -10.98 -0.08 9.34 16 12 O -0.54 -12.53 15.35 5.57 0.09 -12.44 16 13 C 0.02 0.31 5.26 -4.97 -0.03 0.29 16 14 N -0.49 -6.18 4.94 -233.09 -1.15 -7.33 16 15 C 0.03 0.30 6.57 -1.85 -0.01 0.28 16 16 C -0.18 -1.55 6.94 -26.14 -0.18 -1.73 16 17 C 0.37 4.43 8.05 -27.66 -0.22 4.20 16 18 O -0.44 -6.66 17.99 6.00 0.11 -6.56 16 19 C -0.02 -0.26 5.78 -3.78 -0.02 -0.28 16 20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.39 6.59 8.32 -40.82 -0.34 6.25 16 24 H 0.06 0.69 7.72 -51.93 -0.40 0.29 16 25 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 26 H 0.05 0.38 8.01 -51.93 -0.42 -0.04 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.98 7.50 -51.93 -0.39 0.59 16 31 H 0.13 1.96 7.58 -51.93 -0.39 1.57 16 LS Contribution 272.22 15.07 4.10 4.10 Total: -1.00 -33.15 272.22 -6.48 -39.63 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.01 Total: 1.57 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -0.99 Total: 5.41 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.76 Total: -47.30 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.19 Total: -19.00 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.15 -6.48 -39.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396448041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.370 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds