Wall clock time and date at job start Mon Mar 30 2020 03:37:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86801 * 120.00054 * 2 1
4 4 H 1.48500 * 109.47221 * 270.00236 * 3 2 1
5 5 H 1.48499 * 109.47257 * 29.99883 * 3 2 1
6 6 H 1.48497 * 109.47126 * 149.99918 * 3 2 1
7 7 C 1.37877 * 119.99896 * 179.97438 * 2 1 3
8 8 H 1.08010 * 119.99728 * 179.97438 * 7 2 1
9 9 C 1.50693 * 120.00349 * 0.02562 * 7 2 1
10 10 N 1.46495 * 109.47375 * 179.97438 * 9 7 2
11 11 C 1.34779 * 119.99828 * 179.97438 * 10 9 7
12 12 O 1.21270 * 120.00369 * 359.97438 * 11 10 9
13 13 C 1.50710 * 119.99613 * 179.97438 * 11 10 9
14 14 N 1.46900 * 109.46730 * 180.02562 * 13 11 10
15 15 C 1.48624 * 110.99623 * 170.00204 * 14 13 11
16 16 C 1.54922 * 102.81649 * 158.55636 * 15 14 13
17 17 C 1.52177 * 103.31507 * 322.80808 * 16 15 14
18 18 O 1.20759 * 127.08918 * 202.18962 * 17 16 15
19 19 C 1.47901 * 110.99729 * 286.80518 * 14 13 11
20 20 H 0.97003 * 119.99771 * 0.02562 * 1 2 3
21 21 H 1.09005 * 109.47180 * 59.99745 * 9 7 2
22 22 H 1.09002 * 109.46949 * 300.00195 * 9 7 2
23 23 H 0.97002 * 119.99976 * 0.02562 * 10 9 7
24 24 H 1.08996 * 109.47219 * 60.00109 * 13 11 10
25 25 H 1.09000 * 109.46970 * 300.00220 * 13 11 10
26 26 H 1.08997 * 110.74477 * 40.22633 * 15 14 13
27 27 H 1.09002 * 110.74508 * 276.88394 * 15 14 13
28 28 H 1.09002 * 110.67967 * 81.31462 * 16 15 14
29 29 H 1.08999 * 110.68063 * 204.31175 * 16 15 14
30 30 H 1.09003 * 109.87037 * 334.37447 * 19 14 13
31 31 H 1.08998 * 109.86661 * 95.34595 * 19 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2511 -2.4991 0.0005
10 7 2.2030 -3.6126 0.0005
11 6 1.7537 -4.8833 0.0011
12 8 0.5615 -5.1050 0.0020
13 6 2.7331 -6.0288 0.0005
14 7 1.9986 -7.3010 0.0006
15 6 2.9156 -8.4454 -0.2409
16 6 2.1249 -9.6468 0.3349
17 6 1.4410 -9.0607 1.5615
18 8 1.0279 -9.6637 2.5228
19 6 1.3884 -7.5605 1.3226
20 1 -0.4850 0.8401 -0.0004
21 1 0.6247 -2.5571 -0.8897
22 1 0.6240 -2.5567 0.8903
23 1 3.1567 -3.4354 0.0009
24 1 3.3604 -5.9709 0.8899
25 1 3.3591 -5.9711 -0.8900
26 1 3.8542 -8.3080 0.2961
27 1 3.0956 -8.5775 -1.3078
28 1 1.3870 -10.0022 -0.3843
29 1 2.8018 -10.4522 0.6198
30 1 1.9519 -7.0426 2.0988
31 1 0.3533 -7.2191 1.3263
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396448041.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:48
Heat of formation + Delta-G solvation = -64.998213 kcal
Electronic energy + Delta-G solvation = -15121.259018 eV
Core-core repulsion = 12402.923751 eV
Total energy + Delta-G solvation = -2718.335268 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.110 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.14288 -38.76279 -37.06220 -34.16624 -32.37527 -31.51118 -28.68979 -27.60032
-25.61369 -22.61031 -21.58662 -20.07276 -19.60902 -17.19080 -16.53061 -16.49567
-15.60403 -15.22721 -14.95526 -14.69184 -14.33847 -13.90652 -13.56966 -13.38747
-12.91995 -12.42536 -12.07704 -11.98139 -11.88600 -11.68247 -11.32337 -10.99286
-10.88110 -10.33218 -9.71013 -9.41565 -9.15414 -8.75154 -8.54547 -7.89396
-6.18190 -4.25366 1.71206 3.22956 3.28966 3.31194 3.33431 3.50731
3.90845 4.15564 4.33722 4.40992 4.63567 4.86237 5.12565 5.18056
5.26436 5.34103 5.40127 5.52426 5.53805 5.62666 5.86230 6.51239
6.65508 7.27232 7.29732 7.41988 7.50387 7.65105 7.95513 8.60644
8.76903 9.09172 9.41507 10.92005
Molecular weight = 226.11amu
Principal moments of inertia in cm(-1)
A = 0.066419 B = 0.004670 C = 0.004536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 421.463727 B = 5994.427495 C = 6171.551209
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.064 3.936
3 Si 0.904 3.096
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.273 1.273
7 C -0.544 4.544
8 H 0.063 0.937
9 C 0.251 3.749
10 N -0.715 5.715
11 C 0.497 3.503
12 O -0.538 6.538
13 C 0.024 3.976
14 N -0.485 5.485
15 C 0.035 3.965
16 C -0.183 4.183
17 C 0.368 3.632
18 O -0.443 6.443
19 C -0.020 4.020
20 H 0.266 0.734
21 H 0.027 0.973
22 H 0.026 0.974
23 H 0.390 0.610
24 H 0.064 0.936
25 H 0.105 0.895
26 H 0.053 0.947
27 H 0.097 0.903
28 H 0.114 0.886
29 H 0.097 0.903
30 H 0.078 0.922
31 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.878 -14.532 -0.436 17.035
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.204 1.204
5 H -0.210 1.210
6 H -0.198 1.198
7 C -0.583 4.583
8 H 0.081 0.919
9 C 0.130 3.870
10 N -0.364 5.364
11 C 0.281 3.719
12 O -0.415 6.415
13 C -0.107 4.107
14 N -0.211 5.211
15 C -0.093 4.093
16 C -0.221 4.221
17 C 0.242 3.758
18 O -0.314 6.314
19 C -0.148 4.148
20 H 0.076 0.924
21 H 0.045 0.955
22 H 0.044 0.956
23 H 0.222 0.778
24 H 0.082 0.918
25 H 0.123 0.877
26 H 0.071 0.929
27 H 0.115 0.885
28 H 0.132 0.868
29 H 0.115 0.885
30 H 0.096 0.904
31 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 7.211 -14.807 -0.325 16.473
hybrid contribution 1.584 1.173 0.484 2.029
sum 8.795 -13.635 0.159 16.226
Atomic orbital electron populations
1.69974 1.06124 1.27331 1.48817 1.24952 0.94904 0.99457 0.94681
0.86416 0.79603 0.82658 0.78230 1.20444 1.21000 1.19768 1.21224
0.93245 0.90475 1.53311 0.91918 1.19091 0.88270 0.81873 0.97740
1.46447 1.11090 1.06059 1.72812 1.20226 0.89512 0.84044 0.78122
1.90658 1.16555 1.84615 1.49710 1.22310 0.95602 0.89637 1.03183
1.64713 1.28122 1.00750 1.27469 1.23293 0.94264 0.89316 1.02423
1.23089 1.01458 0.99176 0.98336 1.25216 0.73207 0.91821 0.85554
1.90436 1.39429 1.69427 1.32150 1.23481 1.04867 0.95103 0.91373
0.92421 0.95502 0.95592 0.77814 0.91764 0.87703 0.92857 0.88499
0.86795 0.88459 0.90402 0.85631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16
2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16
3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16
4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16
8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16
9 C 0.25 6.54 5.43 -5.20 -0.03 6.52 16
10 N -0.71 -14.42 5.55 -61.47 -0.34 -14.77 16
11 C 0.50 9.43 7.66 -10.98 -0.08 9.34 16
12 O -0.54 -12.53 15.35 5.57 0.09 -12.44 16
13 C 0.02 0.31 5.26 -4.97 -0.03 0.29 16
14 N -0.49 -6.18 4.94 -233.09 -1.15 -7.33 16
15 C 0.03 0.30 6.57 -1.85 -0.01 0.28 16
16 C -0.18 -1.55 6.94 -26.14 -0.18 -1.73 16
17 C 0.37 4.43 8.05 -27.66 -0.22 4.20 16
18 O -0.44 -6.66 17.99 6.00 0.11 -6.56 16
19 C -0.02 -0.26 5.78 -3.78 -0.02 -0.28 16
20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
23 H 0.39 6.59 8.32 -40.82 -0.34 6.25 16
24 H 0.06 0.69 7.72 -51.93 -0.40 0.29 16
25 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16
26 H 0.05 0.38 8.01 -51.93 -0.42 -0.04 16
27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16
29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.08 0.98 7.50 -51.93 -0.39 0.59 16
31 H 0.13 1.96 7.58 -51.93 -0.39 1.57 16
LS Contribution 272.22 15.07 4.10 4.10
Total: -1.00 -33.15 272.22 -6.48 -39.63
By element:
Atomic # 1 Polarization: 5.58 SS G_CDS: -4.01 Total: 1.57 kcal
Atomic # 6 Polarization: 6.40 SS G_CDS: -0.99 Total: 5.41 kcal
Atomic # 7 Polarization: -46.54 SS G_CDS: -0.76 Total: -47.30 kcal
Atomic # 8 Polarization: -19.19 SS G_CDS: 0.19 Total: -19.00 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal
Total LS contribution 4.10 Total: 4.10 kcal
Total: -33.15 -6.48 -39.63 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396448041.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.370 kcal
(2) G-P(sol) polarization free energy of solvation -33.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.518 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds