Wall clock time and date at job start Mon Mar 30 2020 03:37:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86801 * 120.00054 * 2 1
4 4 H 1.48500 * 109.47221 * 270.00236 * 3 2 1
5 5 H 1.48499 * 109.47257 * 29.99883 * 3 2 1
6 6 H 1.48497 * 109.47126 * 149.99918 * 3 2 1
7 7 C 1.37877 * 119.99896 * 179.97438 * 2 1 3
8 8 H 1.08010 * 119.99728 * 179.97438 * 7 2 1
9 9 C 1.50693 * 120.00349 * 0.02562 * 7 2 1
10 10 N 1.46495 * 109.47375 * 179.97438 * 9 7 2
11 11 C 1.34779 * 119.99828 * 179.97438 * 10 9 7
12 12 O 1.21270 * 120.00369 * 359.97438 * 11 10 9
13 13 C 1.50710 * 119.99613 * 179.97438 * 11 10 9
14 14 N 1.46900 * 109.46730 * 180.02562 * 13 11 10
15 15 C 1.48624 * 110.99623 * 170.00204 * 14 13 11
16 16 C 1.54922 * 102.81649 * 158.55636 * 15 14 13
17 17 C 1.52177 * 103.31507 * 322.80808 * 16 15 14
18 18 O 1.20759 * 127.08918 * 202.18962 * 17 16 15
19 19 C 1.47901 * 110.99729 * 286.80518 * 14 13 11
20 20 H 0.97003 * 119.99771 * 0.02562 * 1 2 3
21 21 H 1.09005 * 109.47180 * 59.99745 * 9 7 2
22 22 H 1.09002 * 109.46949 * 300.00195 * 9 7 2
23 23 H 0.97002 * 119.99976 * 0.02562 * 10 9 7
24 24 H 1.08996 * 109.47219 * 60.00109 * 13 11 10
25 25 H 1.09000 * 109.46970 * 300.00220 * 13 11 10
26 26 H 1.08997 * 110.74477 * 40.22633 * 15 14 13
27 27 H 1.09002 * 110.74508 * 276.88394 * 15 14 13
28 28 H 1.09002 * 110.67967 * 81.31462 * 16 15 14
29 29 H 1.08999 * 110.68063 * 204.31175 * 16 15 14
30 30 H 1.09003 * 109.87037 * 334.37447 * 19 14 13
31 31 H 1.08998 * 109.86661 * 95.34595 * 19 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2511 -2.4991 0.0005
10 7 2.2030 -3.6126 0.0005
11 6 1.7537 -4.8833 0.0011
12 8 0.5615 -5.1050 0.0020
13 6 2.7331 -6.0288 0.0005
14 7 1.9986 -7.3010 0.0006
15 6 2.9156 -8.4454 -0.2409
16 6 2.1249 -9.6468 0.3349
17 6 1.4410 -9.0607 1.5615
18 8 1.0279 -9.6637 2.5228
19 6 1.3884 -7.5605 1.3226
20 1 -0.4850 0.8401 -0.0004
21 1 0.6247 -2.5571 -0.8897
22 1 0.6240 -2.5567 0.8903
23 1 3.1567 -3.4354 0.0009
24 1 3.3604 -5.9709 0.8899
25 1 3.3591 -5.9711 -0.8900
26 1 3.8542 -8.3080 0.2961
27 1 3.0956 -8.5775 -1.3078
28 1 1.3870 -10.0022 -0.3843
29 1 2.8018 -10.4522 0.6198
30 1 1.9519 -7.0426 2.0988
31 1 0.3533 -7.2191 1.3263
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396448041.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:48
Heat of formation + Delta-G solvation = -92.270838 kcal
Electronic energy + Delta-G solvation = -15122.441648 eV
Core-core repulsion = 12402.923751 eV
Total energy + Delta-G solvation = -2719.517897 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.110 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.19532 -40.20248 -38.16093 -36.06506 -34.33007 -32.51341 -29.86631 -29.18361
-26.93350 -24.42895 -22.54086 -21.38835 -20.87261 -18.91292 -17.62806 -17.57461
-17.21465 -16.80436 -16.35041 -15.98846 -15.76492 -14.98304 -14.80658 -14.70702
-14.19693 -13.96027 -13.79807 -13.44727 -12.91735 -12.74861 -12.68141 -12.49331
-12.37537 -12.21195 -11.47345 -10.79270 -10.71653 -10.65391 -9.79249 -9.50235
-8.28253 -6.44901 0.75764 1.44154 1.46495 1.57607 1.83561 2.26934
2.45564 2.92003 3.06959 3.11414 3.54356 3.84507 4.01304 4.12282
4.25974 4.40517 4.48030 4.71761 4.81734 4.93227 5.00355 5.13273
5.26044 5.50748 5.58728 5.70149 5.84179 5.87172 6.33718 6.67108
6.98225 7.25260 7.57277 8.84018
Molecular weight = 226.11amu
Principal moments of inertia in cm(-1)
A = 0.066419 B = 0.004670 C = 0.004536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 421.463727 B = 5994.427495 C = 6171.551209
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.003 3.997
3 Si 0.985 3.015
4 H -0.270 1.270
5 H -0.286 1.286
6 H -0.254 1.254
7 C -0.555 4.555
8 H 0.086 0.914
9 C 0.267 3.733
10 N -0.710 5.710
11 C 0.491 3.509
12 O -0.589 6.589
13 C 0.040 3.960
14 N -0.510 5.510
15 C 0.039 3.961
16 C -0.170 4.170
17 C 0.372 3.628
18 O -0.480 6.480
19 C -0.022 4.022
20 H 0.268 0.732
21 H -0.015 1.015
22 H -0.016 1.016
23 H 0.409 0.591
24 H 0.096 0.904
25 H 0.141 0.859
26 H 0.078 0.922
27 H 0.118 0.882
28 H 0.123 0.877
29 H 0.125 0.875
30 H 0.080 0.920
31 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.285 -15.123 -1.128 19.516
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.197 4.197
3 Si 0.808 3.192
4 H -0.196 1.196
5 H -0.212 1.212
6 H -0.178 1.178
7 C -0.593 4.593
8 H 0.104 0.896
9 C 0.144 3.856
10 N -0.361 5.361
11 C 0.277 3.723
12 O -0.470 6.470
13 C -0.091 4.091
14 N -0.236 5.236
15 C -0.087 4.087
16 C -0.207 4.207
17 C 0.248 3.752
18 O -0.354 6.354
19 C -0.151 4.151
20 H 0.077 0.923
21 H 0.003 0.997
22 H 0.002 0.998
23 H 0.245 0.755
24 H 0.114 0.886
25 H 0.159 0.841
26 H 0.097 0.903
27 H 0.136 0.864
28 H 0.141 0.859
29 H 0.143 0.857
30 H 0.098 0.902
31 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 10.683 -15.433 -1.032 18.798
hybrid contribution 0.468 1.298 0.686 1.541
sum 11.152 -14.135 -0.346 18.008
Atomic orbital electron populations
1.70146 1.08364 1.28522 1.50124 1.26078 0.95732 1.03971 0.93898
0.85156 0.78502 0.76951 0.78599 1.19574 1.21179 1.17783 1.21642
0.94375 0.90560 1.52688 0.89621 1.18491 0.88743 0.84484 0.93869
1.46167 1.11154 1.05488 1.73270 1.21463 0.90075 0.84857 0.75871
1.90642 1.19447 1.85354 1.51516 1.22245 0.93730 0.86816 1.06312
1.64616 1.30116 1.02006 1.26826 1.23465 0.94180 0.86901 1.04135
1.23105 1.01715 0.99882 0.96022 1.25509 0.72333 0.91264 0.86053
1.90423 1.41225 1.69800 1.33961 1.23377 1.03065 0.96416 0.92244
0.92318 0.99670 0.99796 0.75505 0.88620 0.84081 0.90341 0.86353
0.85940 0.85680 0.90179 0.89418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16
2 C 0.00 0.15 5.46 84.66 0.46 0.61 16
3 Si 0.98 41.85 29.54 68.60 2.03 43.88 16
4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16
5 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16
6 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16
7 C -0.55 -29.76 9.28 25.60 0.24 -29.52 16
8 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16
9 C 0.27 14.53 5.43 85.63 0.46 15.00 16
10 N -0.71 -28.62 5.55 -466.80 -2.59 -31.21 16
11 C 0.49 18.56 7.66 87.66 0.67 19.23 16
12 O -0.59 -28.69 15.35 -3.00 -0.05 -28.74 16
13 C 0.04 0.91 5.26 85.56 0.45 1.36 16
14 N -0.51 -11.87 4.94 -891.36 -4.40 -16.27 16
15 C 0.04 0.50 6.57 86.63 0.57 1.07 16
16 C -0.17 -2.31 6.94 30.98 0.21 -2.10 16
17 C 0.37 8.59 8.05 29.99 0.24 8.83 16
18 O -0.48 -14.44 17.99 -1.45 -0.03 -14.46 16
19 C -0.02 -0.58 5.78 85.78 0.50 -0.08 16
20 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16
21 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16
22 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16
23 H 0.41 13.10 8.32 -92.71 -0.77 12.33 16
24 H 0.10 1.65 7.72 -2.39 -0.02 1.63 16
25 H 0.14 2.27 8.08 -2.39 -0.02 2.25 16
26 H 0.08 0.67 8.01 -2.39 -0.02 0.65 16
27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16
28 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16
29 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16
30 H 0.08 1.99 7.50 -2.39 -0.02 1.97 16
31 H 0.09 2.95 7.58 -2.39 -0.02 2.93 16
Total: -1.00 -77.05 272.22 -0.58 -77.63
By element:
Atomic # 1 Polarization: 10.51 SS G_CDS: 0.37 Total: 10.88 kcal
Atomic # 6 Polarization: 10.58 SS G_CDS: 3.81 Total: 14.39 kcal
Atomic # 7 Polarization: -96.87 SS G_CDS: -6.70 Total: -103.57 kcal
Atomic # 8 Polarization: -43.13 SS G_CDS: -0.07 Total: -43.20 kcal
Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal
Total: -77.05 -0.58 -77.63 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396448041.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.645 kcal
(2) G-P(sol) polarization free energy of solvation -77.051 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.695 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.271 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds