Wall clock time and date at job start Mon Mar 30 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48500 * 109.47221 * 270.00236 * 3 2 1 5 5 H 1.48499 * 109.47257 * 29.99883 * 3 2 1 6 6 H 1.48497 * 109.47126 * 149.99918 * 3 2 1 7 7 C 1.37877 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00349 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99828 * 179.97438 * 10 9 7 12 12 O 1.21270 * 120.00369 * 359.97438 * 11 10 9 13 13 C 1.50710 * 119.99613 * 179.97438 * 11 10 9 14 14 N 1.46900 * 109.46730 * 180.02562 * 13 11 10 15 15 C 1.48624 * 110.99623 * 170.00204 * 14 13 11 16 16 C 1.54922 * 102.81649 * 158.55636 * 15 14 13 17 17 C 1.52177 * 103.31507 * 322.80808 * 16 15 14 18 18 O 1.20759 * 127.08918 * 202.18962 * 17 16 15 19 19 C 1.47901 * 110.99729 * 286.80518 * 14 13 11 20 20 H 0.97003 * 119.99771 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47180 * 59.99745 * 9 7 2 22 22 H 1.09002 * 109.46949 * 300.00195 * 9 7 2 23 23 H 0.97002 * 119.99976 * 0.02562 * 10 9 7 24 24 H 1.08996 * 109.47219 * 60.00109 * 13 11 10 25 25 H 1.09000 * 109.46970 * 300.00220 * 13 11 10 26 26 H 1.08997 * 110.74477 * 40.22633 * 15 14 13 27 27 H 1.09002 * 110.74508 * 276.88394 * 15 14 13 28 28 H 1.09002 * 110.67967 * 81.31462 * 16 15 14 29 29 H 1.08999 * 110.68063 * 204.31175 * 16 15 14 30 30 H 1.09003 * 109.87037 * 334.37447 * 19 14 13 31 31 H 1.08998 * 109.86661 * 95.34595 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0020 13 6 2.7331 -6.0288 0.0005 14 7 1.9986 -7.3010 0.0006 15 6 2.9156 -8.4454 -0.2409 16 6 2.1249 -9.6468 0.3349 17 6 1.4410 -9.0607 1.5615 18 8 1.0279 -9.6637 2.5228 19 6 1.3884 -7.5605 1.3226 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 3.3604 -5.9709 0.8899 25 1 3.3591 -5.9711 -0.8900 26 1 3.8542 -8.3080 0.2961 27 1 3.0956 -8.5775 -1.3078 28 1 1.3870 -10.0022 -0.3843 29 1 2.8018 -10.4522 0.6198 30 1 1.9519 -7.0426 2.0988 31 1 0.3533 -7.2191 1.3263 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396448041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:48 Heat of formation + Delta-G solvation = -92.270838 kcal Electronic energy + Delta-G solvation = -15122.441648 eV Core-core repulsion = 12402.923751 eV Total energy + Delta-G solvation = -2719.517897 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19532 -40.20248 -38.16093 -36.06506 -34.33007 -32.51341 -29.86631 -29.18361 -26.93350 -24.42895 -22.54086 -21.38835 -20.87261 -18.91292 -17.62806 -17.57461 -17.21465 -16.80436 -16.35041 -15.98846 -15.76492 -14.98304 -14.80658 -14.70702 -14.19693 -13.96027 -13.79807 -13.44727 -12.91735 -12.74861 -12.68141 -12.49331 -12.37537 -12.21195 -11.47345 -10.79270 -10.71653 -10.65391 -9.79249 -9.50235 -8.28253 -6.44901 0.75764 1.44154 1.46495 1.57607 1.83561 2.26934 2.45564 2.92003 3.06959 3.11414 3.54356 3.84507 4.01304 4.12282 4.25974 4.40517 4.48030 4.71761 4.81734 4.93227 5.00355 5.13273 5.26044 5.50748 5.58728 5.70149 5.84179 5.87172 6.33718 6.67108 6.98225 7.25260 7.57277 8.84018 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.066419 B = 0.004670 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.463727 B = 5994.427495 C = 6171.551209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.710 5.710 11 C 0.491 3.509 12 O -0.589 6.589 13 C 0.040 3.960 14 N -0.510 5.510 15 C 0.039 3.961 16 C -0.170 4.170 17 C 0.372 3.628 18 O -0.480 6.480 19 C -0.022 4.022 20 H 0.268 0.732 21 H -0.015 1.015 22 H -0.016 1.016 23 H 0.409 0.591 24 H 0.096 0.904 25 H 0.141 0.859 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.285 -15.123 -1.128 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.361 5.361 11 C 0.277 3.723 12 O -0.470 6.470 13 C -0.091 4.091 14 N -0.236 5.236 15 C -0.087 4.087 16 C -0.207 4.207 17 C 0.248 3.752 18 O -0.354 6.354 19 C -0.151 4.151 20 H 0.077 0.923 21 H 0.003 0.997 22 H 0.002 0.998 23 H 0.245 0.755 24 H 0.114 0.886 25 H 0.159 0.841 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.098 0.902 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.683 -15.433 -1.032 18.798 hybrid contribution 0.468 1.298 0.686 1.541 sum 11.152 -14.135 -0.346 18.008 Atomic orbital electron populations 1.70146 1.08364 1.28522 1.50124 1.26078 0.95732 1.03971 0.93898 0.85156 0.78502 0.76951 0.78599 1.19574 1.21179 1.17783 1.21642 0.94375 0.90560 1.52688 0.89621 1.18491 0.88743 0.84484 0.93869 1.46167 1.11154 1.05488 1.73270 1.21463 0.90075 0.84857 0.75871 1.90642 1.19447 1.85354 1.51516 1.22245 0.93730 0.86816 1.06312 1.64616 1.30116 1.02006 1.26826 1.23465 0.94180 0.86901 1.04135 1.23105 1.01715 0.99882 0.96022 1.25509 0.72333 0.91264 0.86053 1.90423 1.41225 1.69800 1.33961 1.23377 1.03065 0.96416 0.92244 0.92318 0.99670 0.99796 0.75505 0.88620 0.84081 0.90341 0.86353 0.85940 0.85680 0.90179 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.98 41.85 29.54 68.60 2.03 43.88 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.55 -29.76 9.28 25.60 0.24 -29.52 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.53 5.43 85.63 0.46 15.00 16 10 N -0.71 -28.62 5.55 -466.80 -2.59 -31.21 16 11 C 0.49 18.56 7.66 87.66 0.67 19.23 16 12 O -0.59 -28.69 15.35 -3.00 -0.05 -28.74 16 13 C 0.04 0.91 5.26 85.56 0.45 1.36 16 14 N -0.51 -11.87 4.94 -891.36 -4.40 -16.27 16 15 C 0.04 0.50 6.57 86.63 0.57 1.07 16 16 C -0.17 -2.31 6.94 30.98 0.21 -2.10 16 17 C 0.37 8.59 8.05 29.99 0.24 8.83 16 18 O -0.48 -14.44 17.99 -1.45 -0.03 -14.46 16 19 C -0.02 -0.58 5.78 85.78 0.50 -0.08 16 20 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 21 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 22 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 23 H 0.41 13.10 8.32 -92.71 -0.77 12.33 16 24 H 0.10 1.65 7.72 -2.39 -0.02 1.63 16 25 H 0.14 2.27 8.08 -2.39 -0.02 2.25 16 26 H 0.08 0.67 8.01 -2.39 -0.02 0.65 16 27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.99 7.50 -2.39 -0.02 1.97 16 31 H 0.09 2.95 7.58 -2.39 -0.02 2.93 16 Total: -1.00 -77.05 272.22 -0.58 -77.63 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.37 Total: 10.88 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 3.81 Total: 14.39 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -6.70 Total: -103.57 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.07 Total: -43.20 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -77.05 -0.58 -77.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396448041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.645 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds